Wall clock time and date at job start Mon Mar 30 2020 02:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99685 * 2 1 4 4 H 1.48502 * 109.47281 * 270.00003 * 3 2 1 5 5 H 1.48501 * 109.47323 * 30.00354 * 3 2 1 6 6 H 1.48509 * 109.46942 * 150.00051 * 3 2 1 7 7 C 1.37874 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00126 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99901 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.26760 * 300.49295 * 9 7 2 11 11 N 1.46634 * 109.27258 * 60.00106 * 9 7 2 12 12 C 1.47157 * 110.25383 * 172.77333 * 11 9 7 13 13 C 1.52893 * 108.49682 * 288.74255 * 12 11 9 14 14 C 1.50708 * 109.95705 * 50.39317 * 13 12 11 15 15 C 1.38908 * 118.48508 * 163.25361 * 14 13 12 16 16 F 1.35098 * 119.85150 * 359.81658 * 15 14 13 17 17 C 1.38261 * 120.29203 * 179.82946 * 15 14 13 18 18 C 1.38223 * 119.79856 * 0.17328 * 17 15 14 19 19 C 1.38021 * 119.89739 * 359.55753 * 18 17 15 20 20 C 1.37787 * 121.67500 * 343.10366 * 14 13 12 21 21 H 0.97003 * 119.99549 * 359.97438 * 1 2 3 22 22 H 1.00899 * 111.00002 * 296.19454 * 11 9 7 23 23 H 1.09004 * 109.63354 * 169.03943 * 12 11 9 24 24 H 1.08997 * 109.80101 * 48.54107 * 12 11 9 25 25 H 1.09000 * 109.38916 * 290.24643 * 13 12 11 26 26 H 1.09001 * 109.38980 * 170.54549 * 13 12 11 27 27 H 1.08002 * 120.09697 * 179.88670 * 17 15 14 28 28 H 1.07997 * 120.04956 * 179.81256 * 18 17 15 29 29 H 1.07998 * 119.78484 * 180.29004 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6195 -2.5497 0.8863 11 7 0.4093 -2.5719 -1.1990 12 6 -0.2034 -3.9052 -1.3108 13 6 0.8863 -4.9099 -1.6858 14 6 2.0630 -4.7636 -0.7557 15 6 2.9924 -5.7942 -0.6960 16 9 2.8249 -6.8959 -1.4597 17 6 4.0880 -5.6977 0.1419 18 6 4.2562 -4.5716 0.9257 19 6 3.3355 -3.5453 0.8620 20 6 2.2337 -3.6405 0.0240 21 1 -0.4849 0.8401 0.0004 22 1 -0.2952 -1.8497 -1.1904 23 1 -0.9711 -3.8917 -2.0845 24 1 -0.6495 -4.1877 -0.3573 25 1 1.2100 -4.7270 -2.7104 26 1 0.4877 -5.9215 -1.6089 27 1 4.8077 -6.5016 0.1872 28 1 5.1089 -4.4933 1.5838 29 1 3.4712 -2.6643 1.4718 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083664967.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:05 Heat of formation + Delta-G solvation = -26.812447 kcal Electronic energy + Delta-G solvation = -14890.424037 eV Core-core repulsion = 12306.166285 eV Total energy + Delta-G solvation = -2584.257751 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.40961 -39.09823 -35.68526 -33.15580 -31.00509 -30.24337 -28.20168 -25.61367 -22.97137 -22.58383 -21.02889 -18.92409 -16.99193 -16.32905 -15.75953 -15.29067 -15.10178 -14.79350 -14.11697 -13.92115 -13.25068 -12.91250 -12.62244 -12.09617 -11.99518 -11.62784 -11.35648 -11.06190 -10.95930 -10.80688 -10.59977 -10.23500 -9.59488 -9.33749 -8.65735 -8.03039 -7.99757 -7.00676 -6.19547 -4.22256 1.79155 1.88782 3.26192 3.33030 3.35506 4.21182 4.37125 4.80399 5.06306 5.25492 5.27293 5.60252 5.67319 5.78638 5.91351 6.07911 6.13696 6.21883 6.46611 6.54160 6.66464 6.71334 6.77741 6.96690 7.18748 7.24018 7.54123 7.78141 8.05484 8.49115 8.85619 8.95328 9.45741 10.91509 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.036011 B = 0.009798 C = 0.008088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.351043 B = 2857.104946 C = 3460.956565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.501 4.501 8 H 0.066 0.934 9 C 0.243 3.757 10 H 0.017 0.983 11 N -0.676 5.676 12 C 0.049 3.951 13 C -0.068 4.068 14 C -0.114 4.114 15 C 0.080 3.920 16 F -0.150 7.150 17 C -0.176 4.176 18 C -0.108 4.108 19 C -0.116 4.116 20 C -0.010 4.010 21 H 0.266 0.734 22 H 0.366 0.634 23 H 0.061 0.939 24 H 0.019 0.981 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.122 0.878 28 H 0.122 0.878 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.242 -7.468 0.405 8.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.540 4.540 8 H 0.084 0.916 9 C 0.135 3.865 10 H 0.034 0.966 11 N -0.313 5.313 12 C -0.082 4.082 13 C -0.106 4.106 14 C -0.115 4.115 15 C 0.061 3.939 16 F -0.129 7.129 17 C -0.195 4.195 18 C -0.126 4.126 19 C -0.134 4.134 20 C -0.010 4.010 21 H 0.076 0.924 22 H 0.190 0.810 23 H 0.080 0.920 24 H 0.037 0.963 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.140 0.860 28 H 0.140 0.860 29 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.582 -7.512 -0.050 8.323 hybrid contribution -0.201 0.661 0.479 0.841 sum 3.381 -6.851 0.430 7.652 Atomic orbital electron populations 1.69665 1.06091 1.27302 1.50815 1.24993 0.94949 0.99447 0.93969 0.86421 0.79667 0.82610 0.78270 1.20464 1.21245 1.19800 1.21124 0.93095 0.89068 1.50674 0.91575 1.18064 0.89497 0.90227 0.88664 0.96572 1.61092 1.26011 1.02084 1.42077 1.21882 0.94866 0.92793 0.98611 1.20398 0.93493 0.98548 0.98162 1.19692 0.97395 0.93707 1.00720 1.17688 0.97258 0.84274 0.94638 1.91402 1.95566 1.51681 1.74243 1.20828 0.98248 1.00414 1.00016 1.20864 0.99422 0.93299 0.98997 1.21341 0.93813 0.98682 0.99609 1.20231 0.95712 0.93459 0.91633 0.92444 0.81001 0.92029 0.96309 0.90584 0.91860 0.85967 0.85966 0.84724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.26 11.52 55.43 0.64 -23.62 15 2 C 0.07 1.80 5.38 -17.82 -0.10 1.71 15 3 Si 0.90 20.57 29.54 -169.99 -5.02 15.54 15 4 H -0.28 -6.41 7.11 56.52 0.40 -6.00 15 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 15 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 7 C -0.50 -13.19 7.97 -34.44 -0.27 -13.47 15 8 H 0.07 1.72 6.75 -52.49 -0.35 1.37 15 9 C 0.24 6.02 2.44 -70.20 -0.17 5.85 15 10 H 0.02 0.46 8.14 -51.93 -0.42 0.03 15 11 N -0.68 -16.16 6.43 -109.28 -0.70 -16.86 15 12 C 0.05 0.98 6.58 -3.74 -0.02 0.95 15 13 C -0.07 -1.29 5.61 -27.93 -0.16 -1.45 15 14 C -0.11 -2.33 5.78 -104.53 -0.60 -2.94 15 15 C 0.08 1.50 7.23 -39.32 -0.28 1.22 15 16 F -0.15 -2.68 16.57 2.25 0.04 -2.65 15 17 C -0.18 -2.94 10.03 -39.58 -0.40 -3.33 15 18 C -0.11 -1.79 10.04 -39.67 -0.40 -2.19 15 19 C -0.12 -2.29 8.73 -39.47 -0.34 -2.63 15 20 C -0.01 -0.21 5.46 -104.63 -0.57 -0.78 15 21 H 0.27 6.85 8.31 -40.82 -0.34 6.51 15 22 H 0.37 9.25 6.87 -39.29 -0.27 8.98 15 23 H 0.06 1.09 8.14 -51.93 -0.42 0.67 15 24 H 0.02 0.38 8.05 -51.93 -0.42 -0.04 15 25 H 0.08 1.43 8.14 -51.93 -0.42 1.00 15 26 H 0.06 1.06 7.94 -51.93 -0.41 0.65 15 27 H 0.12 1.69 8.06 -52.49 -0.42 1.27 15 28 H 0.12 1.62 8.06 -52.49 -0.42 1.20 15 29 H 0.13 2.63 7.10 -52.49 -0.37 2.26 15 LS Contribution 246.18 15.07 3.71 3.71 Total: -1.00 -27.12 246.18 -7.74 -34.86 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -3.08 Total: 6.08 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -3.32 Total: -17.07 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: -0.06 Total: -40.48 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.04 Total: -2.65 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -27.12 -7.74 -34.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083664967.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.045 kcal (2) G-P(sol) polarization free energy of solvation -27.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds