Wall clock time and date at job start Mon Mar 30 2020 02:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99685 * 2 1 4 4 H 1.48502 * 109.47281 * 270.00003 * 3 2 1 5 5 H 1.48501 * 109.47323 * 30.00354 * 3 2 1 6 6 H 1.48509 * 109.46942 * 150.00051 * 3 2 1 7 7 C 1.37874 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00126 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99901 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.26760 * 300.49295 * 9 7 2 11 11 N 1.46634 * 109.27258 * 60.00106 * 9 7 2 12 12 C 1.47157 * 110.25383 * 172.77333 * 11 9 7 13 13 C 1.52893 * 108.49682 * 288.74255 * 12 11 9 14 14 C 1.50708 * 109.95705 * 50.39317 * 13 12 11 15 15 C 1.38908 * 118.48508 * 163.25361 * 14 13 12 16 16 F 1.35098 * 119.85150 * 359.81658 * 15 14 13 17 17 C 1.38261 * 120.29203 * 179.82946 * 15 14 13 18 18 C 1.38223 * 119.79856 * 0.17328 * 17 15 14 19 19 C 1.38021 * 119.89739 * 359.55753 * 18 17 15 20 20 C 1.37787 * 121.67500 * 343.10366 * 14 13 12 21 21 H 0.97003 * 119.99549 * 359.97438 * 1 2 3 22 22 H 1.00899 * 111.00002 * 296.19454 * 11 9 7 23 23 H 1.09004 * 109.63354 * 169.03943 * 12 11 9 24 24 H 1.08997 * 109.80101 * 48.54107 * 12 11 9 25 25 H 1.09000 * 109.38916 * 290.24643 * 13 12 11 26 26 H 1.09001 * 109.38980 * 170.54549 * 13 12 11 27 27 H 1.08002 * 120.09697 * 179.88670 * 17 15 14 28 28 H 1.07997 * 120.04956 * 179.81256 * 18 17 15 29 29 H 1.07998 * 119.78484 * 180.29004 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6195 -2.5497 0.8863 11 7 0.4093 -2.5719 -1.1990 12 6 -0.2034 -3.9052 -1.3108 13 6 0.8863 -4.9099 -1.6858 14 6 2.0630 -4.7636 -0.7557 15 6 2.9924 -5.7942 -0.6960 16 9 2.8249 -6.8959 -1.4597 17 6 4.0880 -5.6977 0.1419 18 6 4.2562 -4.5716 0.9257 19 6 3.3355 -3.5453 0.8620 20 6 2.2337 -3.6405 0.0240 21 1 -0.4849 0.8401 0.0004 22 1 -0.2952 -1.8497 -1.1904 23 1 -0.9711 -3.8917 -2.0845 24 1 -0.6495 -4.1877 -0.3573 25 1 1.2100 -4.7270 -2.7104 26 1 0.4877 -5.9215 -1.6089 27 1 4.8077 -6.5016 0.1872 28 1 5.1089 -4.4933 1.5838 29 1 3.4712 -2.6643 1.4718 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083664967.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:04 Heat of formation + Delta-G solvation = -42.996570 kcal Electronic energy + Delta-G solvation = -14891.125833 eV Core-core repulsion = 12306.166285 eV Total energy + Delta-G solvation = -2584.959547 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.81877 -40.64717 -37.31082 -34.98823 -32.75047 -31.79806 -29.76092 -27.48321 -24.64516 -24.13571 -22.64060 -20.48944 -18.71997 -18.05739 -17.29339 -16.78620 -16.66130 -16.44588 -15.83308 -15.48537 -14.97979 -14.48561 -14.24677 -13.69908 -13.61275 -13.22084 -12.88673 -12.83311 -12.60272 -12.37905 -12.28753 -12.06089 -11.25877 -11.16190 -10.65445 -9.56799 -9.45532 -8.87491 -8.18760 -6.28806 0.32489 0.42765 1.44425 1.46630 1.55625 2.42437 2.76884 3.08818 3.37096 3.79617 3.86522 3.93604 4.19627 4.31049 4.48814 4.54263 4.62388 4.69860 4.91627 4.99041 5.12112 5.18933 5.26105 5.31802 5.52359 5.67120 5.74859 6.04631 6.23082 6.57157 6.89748 7.01510 7.42266 8.91152 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.036011 B = 0.009798 C = 0.008088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.351043 B = 2857.104946 C = 3460.956565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.022 3.978 3 Si 0.965 3.035 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.517 4.517 8 H 0.063 0.937 9 C 0.246 3.754 10 H -0.024 1.024 11 N -0.688 5.688 12 C 0.048 3.952 13 C -0.065 4.065 14 C -0.132 4.132 15 C 0.074 3.926 16 F -0.145 7.145 17 C -0.161 4.161 18 C -0.093 4.093 19 C -0.130 4.130 20 C -0.044 4.044 21 H 0.266 0.734 22 H 0.353 0.647 23 H 0.084 0.916 24 H 0.012 0.988 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.161 0.839 28 H 0.164 0.836 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.052 -8.597 0.347 9.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.177 4.177 3 Si 0.790 3.210 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.556 4.556 8 H 0.082 0.918 9 C 0.138 3.862 10 H -0.006 1.006 11 N -0.322 5.322 12 C -0.082 4.082 13 C -0.102 4.102 14 C -0.133 4.133 15 C 0.055 3.945 16 F -0.123 7.123 17 C -0.179 4.179 18 C -0.111 4.111 19 C -0.148 4.148 20 C -0.045 4.045 21 H 0.076 0.924 22 H 0.175 0.825 23 H 0.102 0.898 24 H 0.030 0.970 25 H 0.095 0.905 26 H 0.105 0.895 27 H 0.179 0.821 28 H 0.182 0.818 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.402 -8.663 -0.108 10.210 hybrid contribution -0.752 0.925 0.511 1.297 sum 4.650 -7.738 0.403 9.037 Atomic orbital electron populations 1.69778 1.07242 1.27933 1.51370 1.25753 0.95753 1.02516 0.93703 0.85454 0.78726 0.78741 0.78068 1.20518 1.20867 1.18952 1.21398 0.93179 0.90303 1.50705 0.91838 1.17857 0.89661 0.91289 0.87361 1.00647 1.61059 1.26055 1.03553 1.41565 1.21990 0.95876 0.91235 0.99053 1.20403 0.92793 0.99206 0.97838 1.19836 0.98552 0.93944 1.00978 1.17778 0.97557 0.83979 0.95179 1.91416 1.95587 1.51171 1.74175 1.21282 0.97661 1.01029 0.97975 1.21240 0.99324 0.91821 0.98675 1.21415 0.94214 0.99760 0.99455 1.20094 0.96572 0.93566 0.94243 0.92433 0.82528 0.89804 0.96952 0.90523 0.89537 0.82114 0.81842 0.85547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.24 11.52 21.45 0.25 -51.00 15 2 C 0.02 1.19 5.38 84.65 0.46 1.65 15 3 Si 0.96 42.60 29.54 68.60 2.03 44.63 15 4 H -0.28 -12.29 7.11 99.48 0.71 -11.58 15 5 H -0.28 -12.24 7.11 99.48 0.71 -11.53 15 6 H -0.27 -11.25 7.11 99.48 0.71 -10.55 15 7 C -0.52 -28.00 7.97 25.60 0.20 -27.80 15 8 H 0.06 3.37 6.75 -2.91 -0.02 3.35 15 9 C 0.25 12.68 2.44 43.45 0.11 12.78 15 10 H -0.02 -1.34 8.14 -2.39 -0.02 -1.36 15 11 N -0.69 -33.89 6.43 -499.67 -3.21 -37.10 15 12 C 0.05 1.95 6.58 86.22 0.57 2.52 15 13 C -0.07 -2.40 5.61 29.82 0.17 -2.23 15 14 C -0.13 -5.29 5.78 -19.81 -0.11 -5.41 15 15 C 0.07 2.58 7.23 22.44 0.16 2.74 15 16 F -0.14 -4.74 16.57 44.97 0.75 -4.00 15 17 C -0.16 -4.71 10.03 22.27 0.22 -4.49 15 18 C -0.09 -2.77 10.04 22.21 0.22 -2.55 15 19 C -0.13 -5.03 8.73 22.34 0.20 -4.84 15 20 C -0.04 -1.96 5.46 -19.87 -0.11 -2.07 15 21 H 0.27 14.04 8.31 -92.71 -0.77 13.27 15 22 H 0.35 18.56 6.87 -89.69 -0.62 17.94 15 23 H 0.08 2.94 8.14 -2.38 -0.02 2.92 15 24 H 0.01 0.51 8.05 -2.39 -0.02 0.49 15 25 H 0.08 2.80 8.14 -2.39 -0.02 2.78 15 26 H 0.09 2.75 7.94 -2.39 -0.02 2.73 15 27 H 0.16 3.50 8.06 -2.91 -0.02 3.48 15 28 H 0.16 3.53 8.06 -2.91 -0.02 3.50 15 29 H 0.13 4.98 7.10 -2.91 -0.02 4.96 15 Total: -1.00 -59.20 246.18 2.44 -56.76 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.55 Total: 20.40 kcal Atomic # 6 Polarization: -31.78 SS G_CDS: 2.08 Total: -29.70 kcal Atomic # 7 Polarization: -85.13 SS G_CDS: -2.97 Total: -88.10 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.75 Total: -4.00 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -59.20 2.44 -56.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083664967.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.766 kcal (2) G-P(sol) polarization free energy of solvation -59.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds