Wall clock time and date at job start Mon Mar 30 2020 02:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99810 * 2 1 4 4 H 1.48504 * 109.46920 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47022 * 300.00047 * 3 2 1 6 6 H 1.48493 * 109.47106 * 60.00448 * 3 2 1 7 7 C 1.37873 * 119.99718 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99748 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00327 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.26788 * 59.51343 * 9 7 2 11 11 N 1.46634 * 109.27274 * 300.00254 * 9 7 2 12 12 C 1.47159 * 110.25395 * 187.22431 * 11 9 7 13 13 C 1.52896 * 108.49419 * 71.25728 * 12 11 9 14 14 C 1.50705 * 109.95863 * 309.60433 * 13 12 11 15 15 C 1.38904 * 118.48647 * 196.74597 * 14 13 12 16 16 F 1.35097 * 119.85324 * 0.18998 * 15 14 13 17 17 C 1.38254 * 120.29540 * 180.17234 * 15 14 13 18 18 C 1.38225 * 119.79879 * 0.08410 * 17 15 14 19 19 C 1.38027 * 119.89458 * 359.93741 * 18 17 15 20 20 C 1.37789 * 121.67754 * 16.89464 * 14 13 12 21 21 H 0.97002 * 120.00096 * 359.97438 * 1 2 3 22 22 H 1.00907 * 110.99497 * 310.64519 * 11 9 7 23 23 H 1.08999 * 109.63345 * 311.56013 * 12 11 9 24 24 H 1.08995 * 109.63189 * 190.96356 * 12 11 9 25 25 H 1.08999 * 109.38681 * 189.45303 * 13 12 11 26 26 H 1.09000 * 109.30719 * 69.70727 * 13 12 11 27 27 H 1.08002 * 120.10419 * 180.11151 * 17 15 14 28 28 H 1.07996 * 120.05621 * 179.66847 * 18 17 15 29 29 H 1.08004 * 119.77768 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6187 -2.5494 -0.8870 11 7 0.4101 -2.5725 1.1985 12 6 -0.2027 -3.9058 1.3102 13 6 0.8874 -4.9107 1.6840 14 6 2.0634 -4.7640 0.7530 15 6 2.9927 -5.7946 0.6922 16 9 2.8258 -6.8966 1.4555 17 6 4.0877 -5.6977 -0.1463 18 6 4.2582 -4.5691 -0.9259 19 6 3.3348 -3.5450 -0.8649 20 6 2.2336 -3.6406 -0.0264 21 1 -0.4850 0.8401 0.0004 22 1 0.9410 -2.3479 2.0267 23 1 -0.6470 -4.1858 0.3551 24 1 -0.9698 -3.8925 2.0844 25 1 0.4887 -5.9222 1.6069 26 1 1.2114 -4.7265 2.7083 27 1 4.8074 -6.5016 -0.1925 28 1 5.1148 -4.4867 -1.5784 29 1 3.4701 -2.6637 -1.4745 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083664968.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:07 Heat of formation + Delta-G solvation = -24.314399 kcal Electronic energy + Delta-G solvation = -14901.174641 eV Core-core repulsion = 12317.025213 eV Total energy + Delta-G solvation = -2584.149428 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.47800 -39.25149 -35.77829 -33.09022 -31.01830 -30.11575 -28.22146 -25.45211 -22.90484 -22.63573 -21.03958 -19.44077 -16.90916 -16.50904 -15.71215 -15.41199 -15.20921 -14.55888 -14.07925 -13.69927 -13.11152 -12.94954 -12.80010 -12.42159 -11.87193 -11.70309 -11.23051 -11.06301 -10.84461 -10.83092 -10.61489 -10.21450 -9.87801 -9.19377 -8.56211 -8.08895 -7.94071 -7.03059 -5.98139 -4.13965 1.72293 1.81828 3.28120 3.37204 3.39819 4.16419 4.41550 4.73830 5.15068 5.17428 5.25019 5.57679 5.67763 5.71092 5.84851 5.92068 6.03073 6.12046 6.43173 6.53493 6.61855 6.69532 6.72005 6.94552 7.15346 7.32017 7.51455 7.81569 8.06600 8.46109 8.81004 8.99254 9.55228 11.05925 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.036108 B = 0.009800 C = 0.008104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.264464 B = 2856.410518 C = 3454.151665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.083 3.917 3 Si 0.886 3.114 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.539 4.539 8 H 0.062 0.938 9 C 0.248 3.752 10 H 0.059 0.941 11 N -0.642 5.642 12 C 0.052 3.948 13 C -0.114 4.114 14 C -0.127 4.127 15 C 0.083 3.917 16 F -0.150 7.150 17 C -0.177 4.177 18 C -0.107 4.107 19 C -0.111 4.111 20 C -0.047 4.047 21 H 0.258 0.742 22 H 0.328 0.672 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.122 0.878 28 H 0.122 0.878 29 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.151 -7.883 0.350 8.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.125 4.125 3 Si 0.714 3.286 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.577 4.577 8 H 0.080 0.920 9 C 0.140 3.860 10 H 0.076 0.924 11 N -0.269 5.269 12 C -0.078 4.078 13 C -0.153 4.153 14 C -0.128 4.128 15 C 0.063 3.937 16 F -0.129 7.129 17 C -0.196 4.196 18 C -0.125 4.125 19 C -0.130 4.130 20 C -0.049 4.049 21 H 0.068 0.932 22 H 0.145 0.855 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.140 0.860 28 H 0.140 0.860 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.375 -7.497 0.082 8.222 hybrid contribution 1.355 -0.010 0.468 1.434 sum 4.731 -7.507 0.550 8.890 Atomic orbital electron populations 1.70120 1.05688 1.25954 1.46110 1.24987 0.94692 0.98773 0.94029 0.86649 0.80244 0.84110 0.77616 1.19793 1.21010 1.20975 1.21018 0.92507 0.89235 1.54975 0.92033 1.18293 0.87537 0.89004 0.91181 0.92403 1.61320 1.37536 1.22162 1.05833 1.22089 0.95397 0.89556 1.00789 1.21156 0.95210 1.01358 0.97563 1.19705 0.97380 0.94176 1.01539 1.17698 0.97183 0.84242 0.94527 1.91403 1.95570 1.51705 1.74233 1.20839 0.98266 1.00405 1.00054 1.20937 0.99454 0.93293 0.98857 1.21399 0.93676 0.98551 0.99365 1.21303 0.96796 0.95022 0.91779 0.93230 0.85471 0.91813 0.91733 0.91595 0.91313 0.85991 0.85995 0.84600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.47 12.76 55.43 0.71 -22.76 15 2 C 0.08 2.19 5.39 -17.82 -0.10 2.09 15 3 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 15 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 7 C -0.54 -13.90 7.82 -34.44 -0.27 -14.17 15 8 H 0.06 1.57 6.75 -52.49 -0.35 1.22 15 9 C 0.25 5.94 2.38 -70.20 -0.17 5.78 15 10 H 0.06 1.54 8.14 -51.93 -0.42 1.12 15 11 N -0.64 -14.74 5.94 -109.28 -0.65 -15.39 15 12 C 0.05 1.00 6.62 -3.74 -0.02 0.98 15 13 C -0.11 -2.03 5.48 -27.93 -0.15 -2.18 15 14 C -0.13 -2.49 5.78 -104.54 -0.60 -3.09 15 15 C 0.08 1.51 7.23 -39.33 -0.28 1.22 15 16 F -0.15 -2.66 16.57 2.25 0.04 -2.62 15 17 C -0.18 -2.91 10.03 -39.58 -0.40 -3.30 15 18 C -0.11 -1.76 10.04 -39.66 -0.40 -2.15 15 19 C -0.11 -2.14 8.73 -39.47 -0.34 -2.49 15 20 C -0.05 -0.99 5.46 -104.63 -0.57 -1.56 15 21 H 0.26 6.85 8.31 -40.82 -0.34 6.51 15 22 H 0.33 7.54 8.55 -39.29 -0.34 7.21 15 23 H 0.06 1.24 8.05 -51.93 -0.42 0.82 15 24 H 0.06 1.12 8.14 -51.93 -0.42 0.70 15 25 H 0.07 1.08 7.94 -51.93 -0.41 0.67 15 26 H 0.07 1.18 8.14 -51.93 -0.42 0.76 15 27 H 0.12 1.68 8.06 -52.49 -0.42 1.25 15 28 H 0.12 1.61 8.06 -52.49 -0.42 1.18 15 29 H 0.14 2.62 7.10 -52.48 -0.37 2.24 15 LS Contribution 248.31 15.07 3.74 3.74 Total: -1.00 -27.33 248.31 -7.63 -34.96 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -3.14 Total: 5.62 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -3.31 Total: -18.88 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.06 Total: -38.15 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.04 Total: -2.62 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -27.33 -7.63 -34.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083664968.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.647 kcal (2) G-P(sol) polarization free energy of solvation -27.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds