Wall clock time and date at job start Mon Mar 30 2020 02:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99810 * 2 1 4 4 H 1.48504 * 109.46920 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47022 * 300.00047 * 3 2 1 6 6 H 1.48493 * 109.47106 * 60.00448 * 3 2 1 7 7 C 1.37873 * 119.99718 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99748 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00327 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.26788 * 59.51343 * 9 7 2 11 11 N 1.46634 * 109.27274 * 300.00254 * 9 7 2 12 12 C 1.47159 * 110.25395 * 187.22431 * 11 9 7 13 13 C 1.52896 * 108.49419 * 71.25728 * 12 11 9 14 14 C 1.50705 * 109.95863 * 309.60433 * 13 12 11 15 15 C 1.38904 * 118.48647 * 196.74597 * 14 13 12 16 16 F 1.35097 * 119.85324 * 0.18998 * 15 14 13 17 17 C 1.38254 * 120.29540 * 180.17234 * 15 14 13 18 18 C 1.38225 * 119.79879 * 0.08410 * 17 15 14 19 19 C 1.38027 * 119.89458 * 359.93741 * 18 17 15 20 20 C 1.37789 * 121.67754 * 16.89464 * 14 13 12 21 21 H 0.97002 * 120.00096 * 359.97438 * 1 2 3 22 22 H 1.00907 * 110.99497 * 310.64519 * 11 9 7 23 23 H 1.08999 * 109.63345 * 311.56013 * 12 11 9 24 24 H 1.08995 * 109.63189 * 190.96356 * 12 11 9 25 25 H 1.08999 * 109.38681 * 189.45303 * 13 12 11 26 26 H 1.09000 * 109.30719 * 69.70727 * 13 12 11 27 27 H 1.08002 * 120.10419 * 180.11151 * 17 15 14 28 28 H 1.07996 * 120.05621 * 179.66847 * 18 17 15 29 29 H 1.08004 * 119.77768 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6187 -2.5494 -0.8870 11 7 0.4101 -2.5725 1.1985 12 6 -0.2027 -3.9058 1.3102 13 6 0.8874 -4.9107 1.6840 14 6 2.0634 -4.7640 0.7530 15 6 2.9927 -5.7946 0.6922 16 9 2.8258 -6.8966 1.4555 17 6 4.0877 -5.6977 -0.1463 18 6 4.2582 -4.5691 -0.9259 19 6 3.3348 -3.5450 -0.8649 20 6 2.2336 -3.6406 -0.0264 21 1 -0.4850 0.8401 0.0004 22 1 0.9410 -2.3479 2.0267 23 1 -0.6470 -4.1858 0.3551 24 1 -0.9698 -3.8925 2.0844 25 1 0.4887 -5.9222 1.6069 26 1 1.2114 -4.7265 2.7083 27 1 4.8074 -6.5016 -0.1925 28 1 5.1148 -4.4867 -1.5784 29 1 3.4701 -2.6637 -1.4745 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083664968.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:07 Heat of formation + Delta-G solvation = -40.594974 kcal Electronic energy + Delta-G solvation = -14901.880620 eV Core-core repulsion = 12317.025213 eV Total energy + Delta-G solvation = -2584.855406 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.86225 -40.77052 -37.33888 -34.92641 -32.74258 -31.62339 -29.74737 -27.31464 -24.54107 -24.15492 -22.63080 -20.98744 -18.66530 -18.09491 -17.20772 -16.90360 -16.62504 -16.38428 -15.64567 -15.32747 -14.69232 -14.47625 -14.32478 -14.03401 -13.54683 -13.26352 -12.84841 -12.71250 -12.53595 -12.35090 -12.29175 -11.94804 -11.59178 -11.04493 -10.57239 -9.54209 -9.44695 -8.75542 -7.99278 -6.20587 0.29178 0.38798 1.45243 1.48454 1.58097 2.46836 2.74307 3.22049 3.34263 3.75235 3.82757 4.04356 4.16241 4.25305 4.37411 4.49056 4.60936 4.68309 4.94234 5.02893 5.18509 5.22351 5.25898 5.35882 5.53646 5.65270 5.77775 6.05395 6.20261 6.60453 7.01704 7.05206 7.51749 9.04749 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.036108 B = 0.009800 C = 0.008104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.264464 B = 2856.410518 C = 3454.151665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.035 3.965 3 Si 0.951 3.049 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.254 3.746 10 H 0.016 0.984 11 N -0.661 5.661 12 C 0.056 3.944 13 C -0.106 4.106 14 C -0.140 4.140 15 C 0.074 3.926 16 F -0.146 7.146 17 C -0.163 4.163 18 C -0.094 4.094 19 C -0.126 4.126 20 C -0.075 4.075 21 H 0.257 0.743 22 H 0.325 0.675 23 H 0.053 0.947 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.159 0.841 28 H 0.162 0.838 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.979 -9.048 0.560 10.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.169 4.169 3 Si 0.777 3.223 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.583 4.583 8 H 0.078 0.922 9 C 0.145 3.855 10 H 0.034 0.966 11 N -0.288 5.288 12 C -0.074 4.074 13 C -0.145 4.145 14 C -0.141 4.141 15 C 0.055 3.945 16 F -0.125 7.125 17 C -0.182 4.182 18 C -0.112 4.112 19 C -0.145 4.145 20 C -0.078 4.078 21 H 0.066 0.934 22 H 0.142 0.858 23 H 0.071 0.929 24 H 0.101 0.899 25 H 0.102 0.898 26 H 0.095 0.905 27 H 0.176 0.824 28 H 0.179 0.821 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.213 -8.676 0.289 10.126 hybrid contribution 0.813 0.255 0.379 0.933 sum 6.026 -8.421 0.668 10.376 Atomic orbital electron populations 1.70249 1.07117 1.26533 1.47681 1.25701 0.95385 1.01902 0.93875 0.85643 0.79192 0.80155 0.77351 1.19128 1.20821 1.21028 1.21305 0.92590 0.90399 1.54034 0.92183 1.17913 0.87608 0.89888 0.90046 0.96624 1.61136 1.37598 1.24836 1.05220 1.22089 0.96093 0.88325 1.00927 1.21078 0.94207 1.01625 0.97578 1.19834 0.98411 0.94192 1.01643 1.17804 0.97554 0.84019 0.95092 1.91416 1.95598 1.51270 1.74187 1.21272 0.97757 1.00988 0.98141 1.21279 0.99416 0.91917 0.98575 1.21454 0.94194 0.99534 0.99284 1.21021 0.97456 0.95075 0.94214 0.93425 0.85834 0.92876 0.89868 0.89812 0.90523 0.82369 0.82094 0.85539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.30 12.76 21.45 0.27 -50.03 15 2 C 0.04 1.90 5.39 84.65 0.46 2.36 15 3 Si 0.95 42.34 29.54 68.60 2.03 44.37 15 4 H -0.27 -11.49 7.11 99.48 0.71 -10.78 15 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 15 6 H -0.28 -12.61 7.11 99.48 0.71 -11.90 15 7 C -0.54 -28.77 7.82 25.60 0.20 -28.57 15 8 H 0.06 3.11 6.75 -2.91 -0.02 3.09 15 9 C 0.25 12.61 2.38 43.45 0.10 12.71 15 10 H 0.02 0.91 8.14 -2.39 -0.02 0.89 15 11 N -0.66 -31.18 5.94 -499.66 -2.97 -34.15 15 12 C 0.06 2.14 6.62 86.22 0.57 2.71 15 13 C -0.11 -3.66 5.48 29.82 0.16 -3.50 15 14 C -0.14 -5.33 5.78 -19.81 -0.11 -5.44 15 15 C 0.07 2.52 7.23 22.43 0.16 2.68 15 16 F -0.15 -4.71 16.57 44.97 0.75 -3.96 15 17 C -0.16 -4.71 10.03 22.27 0.22 -4.49 15 18 C -0.09 -2.77 10.04 22.22 0.22 -2.55 15 19 C -0.13 -4.75 8.73 22.34 0.19 -4.56 15 20 C -0.08 -3.20 5.46 -19.87 -0.11 -3.31 15 21 H 0.26 14.00 8.31 -92.71 -0.77 13.23 15 22 H 0.32 15.29 8.55 -89.69 -0.77 14.52 15 23 H 0.05 2.12 8.05 -2.39 -0.02 2.10 15 24 H 0.08 2.84 8.14 -2.39 -0.02 2.83 15 25 H 0.08 2.58 7.94 -2.39 -0.02 2.56 15 26 H 0.08 2.52 8.14 -2.39 -0.02 2.50 15 27 H 0.16 3.45 8.06 -2.91 -0.02 3.43 15 28 H 0.16 3.47 8.06 -2.91 -0.02 3.45 15 29 H 0.13 4.90 7.10 -2.91 -0.02 4.88 15 Total: -1.00 -59.17 248.31 2.55 -56.62 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.40 Total: 19.11 kcal Atomic # 6 Polarization: -34.02 SS G_CDS: 2.07 Total: -31.95 kcal Atomic # 7 Polarization: -81.48 SS G_CDS: -2.70 Total: -84.17 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 0.75 Total: -3.96 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -59.17 2.55 -56.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083664968.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.020 kcal (2) G-P(sol) polarization free energy of solvation -59.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds