Wall clock time and date at job start Mon Mar 30 2020 02:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 H 1.08996 * 109.30411 * 59.58342 * 9 7 2 11 11 N 1.46640 * 109.29894 * 299.99468 * 9 7 2 12 12 C 1.47163 * 110.23200 * 187.17438 * 11 9 7 13 13 C 1.52901 * 108.50086 * 71.29069 * 12 11 9 14 14 C 1.50719 * 109.96278 * 309.64073 * 13 12 11 15 15 C 1.38696 * 118.47760 * 196.71190 * 14 13 12 16 16 C 1.38042 * 120.40373 * 180.16066 * 15 14 13 17 17 C 1.38223 * 119.85674 * 0.02562 * 16 15 14 18 18 C 1.38245 * 119.83904 * 359.93877 * 17 16 15 19 19 F 1.35098 * 119.83811 * 180.02562 * 18 17 16 20 20 C 1.37793 * 121.65743 * 16.76336 * 14 13 12 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.00900 * 110.99849 * 310.58320 * 11 9 7 23 23 H 1.09001 * 109.63238 * 190.98949 * 12 11 9 24 24 H 1.08998 * 109.63534 * 311.38618 * 12 11 9 25 25 H 1.09002 * 109.39003 * 69.79248 * 13 12 11 26 26 H 1.09008 * 109.38722 * 189.59073 * 13 12 11 27 27 H 1.07993 * 119.79802 * 0.17145 * 15 14 13 28 28 H 1.07996 * 120.07238 * 180.02562 * 16 15 14 29 29 H 1.08001 * 120.08106 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8715 -0.6739 0.8876 11 7 3.9966 -0.5014 -1.1979 12 6 5.4579 -0.6368 -1.3075 13 6 5.7843 -2.0827 -1.6826 14 6 5.0675 -3.0295 -0.7545 15 6 5.4946 -4.3477 -0.6954 16 6 4.8645 -5.2495 0.1385 17 6 3.8010 -4.8376 0.9195 18 6 3.3740 -3.5240 0.8627 19 9 2.3349 -3.1213 1.6264 20 6 4.0093 -2.6154 0.0250 21 1 -0.4850 0.8401 0.0004 22 1 3.5381 -0.8486 -2.0270 23 1 5.8310 0.0351 -2.0804 24 1 5.9213 -0.3896 -0.3524 25 1 5.4664 -2.2712 -2.7080 26 1 6.8594 -2.2436 -1.6017 27 1 6.3252 -4.6706 -1.3053 28 1 5.2017 -6.2746 0.1806 29 1 3.3051 -5.5402 1.5728 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083729806.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:26 Heat of formation + Delta-G solvation = -10.292222 kcal Electronic energy + Delta-G solvation = -15184.278175 eV Core-core repulsion = 12600.736795 eV Total energy + Delta-G solvation = -2583.541380 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -47.92478 -39.39721 -36.07782 -32.92551 -31.30047 -30.27990 -28.57633 -25.56393 -23.02925 -22.55493 -20.95522 -19.61025 -17.12833 -16.44300 -15.67822 -15.39095 -14.65333 -14.56449 -14.16202 -13.88078 -13.38545 -12.87038 -12.70664 -12.44818 -12.03982 -11.76345 -11.57891 -11.22056 -10.96616 -10.68017 -10.42000 -10.05301 -9.74103 -9.22427 -8.52315 -8.21310 -7.89555 -7.16320 -5.97769 -4.07058 1.65577 1.75578 3.52163 3.61415 3.92646 4.05741 4.70684 4.89884 5.02869 5.09035 5.20995 5.43046 5.50991 5.59797 5.64948 5.71420 5.83835 5.90456 6.19010 6.30869 6.47912 6.57924 6.66879 6.73770 6.83124 6.93058 7.45326 7.61992 8.04678 8.20293 8.62276 9.03024 9.63870 11.11607 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.031266 B = 0.013116 C = 0.009792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.335442 B = 2134.225443 C = 2858.890591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.086 3.914 3 Si 0.854 3.146 4 H -0.295 1.295 5 H -0.188 1.188 6 H -0.302 1.302 7 C -0.524 4.524 8 H 0.079 0.921 9 C 0.217 3.783 10 H 0.052 0.948 11 N -0.668 5.668 12 C 0.046 3.954 13 C -0.112 4.112 14 C -0.069 4.069 15 C -0.142 4.142 16 C -0.109 4.109 17 C -0.174 4.174 18 C 0.125 3.875 19 F -0.116 7.116 20 C -0.106 4.106 21 H 0.263 0.737 22 H 0.339 0.661 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.117 0.883 28 H 0.121 0.879 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.970 -6.259 -1.926 13.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.118 4.118 3 Si 0.681 3.319 4 H -0.222 1.222 5 H -0.109 1.109 6 H -0.230 1.230 7 C -0.562 4.562 8 H 0.097 0.903 9 C 0.109 3.891 10 H 0.070 0.930 11 N -0.298 5.298 12 C -0.085 4.085 13 C -0.151 4.151 14 C -0.069 4.069 15 C -0.161 4.161 16 C -0.127 4.127 17 C -0.193 4.193 18 C 0.105 3.895 19 F -0.094 7.094 20 C -0.109 4.109 21 H 0.072 0.928 22 H 0.158 0.842 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.135 0.865 28 H 0.139 0.861 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 11.799 -5.487 -1.613 13.112 hybrid contribution 0.063 -0.235 -0.024 0.244 sum 11.862 -5.721 -1.637 13.271 Atomic orbital electron populations 1.69946 1.06894 1.27264 1.49152 1.24968 0.94543 0.99782 0.92528 0.87364 0.84827 0.81474 0.78269 1.22184 1.10933 1.22974 1.20931 0.86921 0.95174 1.53158 0.90288 1.18545 0.96541 0.83509 0.90531 0.93026 1.62135 1.01819 1.58738 1.07064 1.22095 0.92342 0.92877 1.01147 1.21186 0.99332 0.96595 0.97995 1.19492 0.95504 0.94401 0.97547 1.20965 1.01217 0.93129 1.00757 1.20704 0.95976 0.99172 0.96816 1.21072 1.00047 0.94892 1.03270 1.17669 0.86783 0.92257 0.92812 1.91594 1.54311 1.90983 1.72527 1.20957 0.94659 0.99810 0.95481 0.92774 0.84237 0.91330 0.91598 0.90824 0.91128 0.86539 0.86082 0.85630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.80 13.96 55.43 0.77 -27.02 15 2 C 0.09 2.50 5.47 -17.82 -0.10 2.40 15 3 Si 0.85 21.31 26.92 -169.99 -4.58 16.74 15 4 H -0.29 -7.54 7.11 56.52 0.40 -7.14 15 5 H -0.19 -4.29 5.17 56.52 0.29 -4.00 15 6 H -0.30 -7.75 7.11 56.52 0.40 -7.34 15 7 C -0.52 -14.64 7.73 -34.44 -0.27 -14.90 15 8 H 0.08 2.44 6.39 -52.49 -0.34 2.10 15 9 C 0.22 5.06 1.82 -70.20 -0.13 4.93 15 10 H 0.05 1.27 7.54 -51.93 -0.39 0.88 15 11 N -0.67 -13.80 3.24 -109.28 -0.35 -14.16 15 12 C 0.05 0.74 6.62 -3.73 -0.02 0.72 15 13 C -0.11 -1.65 5.82 -27.92 -0.16 -1.81 15 14 C -0.07 -1.20 5.77 -104.61 -0.60 -1.81 15 15 C -0.14 -2.15 9.65 -39.48 -0.38 -2.53 15 16 C -0.11 -1.60 10.05 -39.66 -0.40 -2.00 15 17 C -0.17 -2.98 10.02 -39.58 -0.40 -3.37 15 18 C 0.12 2.63 6.73 -39.31 -0.26 2.37 15 19 F -0.12 -2.78 14.32 2.25 0.03 -2.75 15 20 C -0.11 -2.23 5.47 -104.56 -0.57 -2.80 15 21 H 0.26 7.72 8.31 -40.82 -0.34 7.38 15 22 H 0.34 7.03 8.55 -39.29 -0.34 6.69 15 23 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 24 H 0.07 1.09 8.05 -51.93 -0.42 0.67 15 25 H 0.07 1.02 8.14 -51.93 -0.42 0.60 15 26 H 0.07 0.87 8.14 -51.92 -0.42 0.44 15 27 H 0.12 1.41 8.06 -52.49 -0.42 0.99 15 28 H 0.12 1.38 8.06 -52.49 -0.42 0.96 15 29 H 0.13 1.87 8.06 -52.49 -0.42 1.44 15 LS Contribution 240.41 15.07 3.62 3.62 Total: -1.00 -31.10 240.41 -7.06 -38.16 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -3.26 Total: 4.22 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -3.30 Total: -18.81 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.42 Total: -41.18 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.03 Total: -2.75 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.58 Total: 16.74 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -31.10 -7.06 -38.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083729806.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.863 kcal (2) G-P(sol) polarization free energy of solvation -31.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds