Wall clock time and date at job start Mon Mar 30 2020 02:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 H 1.08996 * 109.30411 * 59.58342 * 9 7 2 11 11 N 1.46640 * 109.29894 * 299.99468 * 9 7 2 12 12 C 1.47163 * 110.23200 * 187.17438 * 11 9 7 13 13 C 1.52901 * 108.50086 * 71.29069 * 12 11 9 14 14 C 1.50719 * 109.96278 * 309.64073 * 13 12 11 15 15 C 1.38696 * 118.47760 * 196.71190 * 14 13 12 16 16 C 1.38042 * 120.40373 * 180.16066 * 15 14 13 17 17 C 1.38223 * 119.85674 * 0.02562 * 16 15 14 18 18 C 1.38245 * 119.83904 * 359.93877 * 17 16 15 19 19 F 1.35098 * 119.83811 * 180.02562 * 18 17 16 20 20 C 1.37793 * 121.65743 * 16.76336 * 14 13 12 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.00900 * 110.99849 * 310.58320 * 11 9 7 23 23 H 1.09001 * 109.63238 * 190.98949 * 12 11 9 24 24 H 1.08998 * 109.63534 * 311.38618 * 12 11 9 25 25 H 1.09002 * 109.39003 * 69.79248 * 13 12 11 26 26 H 1.09008 * 109.38722 * 189.59073 * 13 12 11 27 27 H 1.07993 * 119.79802 * 0.17145 * 15 14 13 28 28 H 1.07996 * 120.07238 * 180.02562 * 16 15 14 29 29 H 1.08001 * 120.08106 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8715 -0.6739 0.8876 11 7 3.9966 -0.5014 -1.1979 12 6 5.4579 -0.6368 -1.3075 13 6 5.7843 -2.0827 -1.6826 14 6 5.0675 -3.0295 -0.7545 15 6 5.4946 -4.3477 -0.6954 16 6 4.8645 -5.2495 0.1385 17 6 3.8010 -4.8376 0.9195 18 6 3.3740 -3.5240 0.8627 19 9 2.3349 -3.1213 1.6264 20 6 4.0093 -2.6154 0.0250 21 1 -0.4850 0.8401 0.0004 22 1 3.5381 -0.8486 -2.0270 23 1 5.8310 0.0351 -2.0804 24 1 5.9213 -0.3896 -0.3524 25 1 5.4664 -2.2712 -2.7080 26 1 6.8594 -2.2436 -1.6017 27 1 6.3252 -4.6706 -1.3053 28 1 5.2017 -6.2746 0.1806 29 1 3.3051 -5.5402 1.5728 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083729806.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:26 Heat of formation + Delta-G solvation = -31.221897 kcal Electronic energy + Delta-G solvation = -15185.185754 eV Core-core repulsion = 12600.736795 eV Total energy + Delta-G solvation = -2584.448959 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.61457 -40.79164 -37.53340 -34.82249 -33.02175 -31.67997 -30.02584 -27.36432 -24.48592 -24.05958 -22.49481 -21.04548 -19.13042 -17.95543 -17.18216 -16.86011 -16.46303 -16.27927 -15.53732 -15.42105 -14.90941 -14.46731 -14.30187 -14.09857 -13.71567 -13.15317 -12.97892 -12.80902 -12.58755 -12.19648 -11.95092 -11.90491 -11.49009 -11.17702 -10.72998 -9.54888 -9.37852 -8.78552 -8.22129 -6.33629 0.32182 0.39331 1.49692 1.55022 1.92416 2.60004 2.72362 3.12115 3.54394 3.75625 3.83388 4.01516 4.12262 4.31764 4.34843 4.45712 4.61703 4.72718 4.93703 5.07507 5.09667 5.23160 5.26582 5.30309 5.43298 5.51291 5.73572 6.08767 6.18813 6.37248 6.78459 6.81183 7.40291 8.91281 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.031266 B = 0.013116 C = 0.009792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.335442 B = 2134.225443 C = 2858.890591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.024 3.976 3 Si 0.920 3.080 4 H -0.305 1.305 5 H -0.148 1.148 6 H -0.311 1.311 7 C -0.516 4.516 8 H 0.033 0.967 9 C 0.227 3.773 10 H 0.032 0.968 11 N -0.679 5.679 12 C 0.042 3.958 13 C -0.106 4.106 14 C -0.073 4.073 15 C -0.130 4.130 16 C -0.094 4.094 17 C -0.176 4.176 18 C 0.075 3.925 19 F -0.151 7.151 20 C -0.143 4.143 21 H 0.262 0.738 22 H 0.338 0.662 23 H 0.099 0.901 24 H 0.063 0.937 25 H 0.089 0.911 26 H 0.109 0.891 27 H 0.162 0.838 28 H 0.167 0.833 29 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.091 -7.363 -3.595 18.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.174 4.174 3 Si 0.745 3.255 4 H -0.233 1.233 5 H -0.068 1.068 6 H -0.239 1.239 7 C -0.554 4.554 8 H 0.051 0.949 9 C 0.118 3.882 10 H 0.050 0.950 11 N -0.308 5.308 12 C -0.087 4.087 13 C -0.144 4.144 14 C -0.073 4.073 15 C -0.148 4.148 16 C -0.112 4.112 17 C -0.194 4.194 18 C 0.055 3.945 19 F -0.130 7.130 20 C -0.145 4.145 21 H 0.070 0.930 22 H 0.156 0.844 23 H 0.117 0.883 24 H 0.082 0.918 25 H 0.107 0.893 26 H 0.127 0.873 27 H 0.180 0.820 28 H 0.184 0.816 29 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 15.955 -6.612 -3.291 17.581 hybrid contribution -1.151 -0.093 0.494 1.256 sum 14.804 -6.705 -2.796 16.490 Atomic orbital electron populations 1.70105 1.08877 1.27933 1.52225 1.25906 0.95185 1.03741 0.92614 0.86452 0.84986 0.76359 0.77731 1.23338 1.06799 1.23863 1.21135 0.89959 0.93102 1.51183 0.94911 1.18090 0.93227 0.85866 0.91010 0.95024 1.61774 1.04944 1.58356 1.05727 1.22258 0.88927 0.95227 1.02245 1.21210 1.01188 0.94215 0.97770 1.19901 0.94250 0.96377 0.96764 1.21484 1.01502 0.91728 1.00083 1.21270 0.93940 1.01279 0.94677 1.21364 1.00850 0.93313 1.03906 1.18285 0.87356 0.94527 0.94328 1.91492 1.56232 1.91582 1.73692 1.20856 0.97191 0.98483 0.98020 0.93000 0.84373 0.88298 0.91836 0.89310 0.87325 0.82025 0.81554 0.84086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.49 13.96 21.45 0.30 -62.19 15 2 C 0.02 1.43 5.47 84.66 0.46 1.89 15 3 Si 0.92 45.52 26.92 68.60 1.85 47.37 15 4 H -0.31 -15.51 7.11 99.48 0.71 -14.80 15 5 H -0.15 -6.34 5.17 99.48 0.51 -5.83 15 6 H -0.31 -15.65 7.11 99.48 0.71 -14.95 15 7 C -0.52 -30.39 7.73 25.60 0.20 -30.19 15 8 H 0.03 2.18 6.39 -2.91 -0.02 2.17 15 9 C 0.23 10.77 1.82 43.45 0.08 10.84 15 10 H 0.03 1.61 7.54 -2.39 -0.02 1.59 15 11 N -0.68 -26.92 3.24 -499.64 -1.62 -28.54 15 12 C 0.04 1.22 6.62 86.22 0.57 1.79 15 13 C -0.11 -2.55 5.82 29.82 0.17 -2.38 15 14 C -0.07 -2.28 5.77 -19.85 -0.11 -2.39 15 15 C -0.13 -3.21 9.65 22.33 0.22 -3.00 15 16 C -0.09 -2.35 10.05 22.22 0.22 -2.12 15 17 C -0.18 -5.78 10.02 22.27 0.22 -5.56 15 18 C 0.07 3.24 6.73 22.44 0.15 3.39 15 19 F -0.15 -7.86 14.32 44.97 0.64 -7.21 15 20 C -0.14 -5.97 5.47 -19.82 -0.11 -6.08 15 21 H 0.26 16.23 8.31 -92.71 -0.77 15.46 15 22 H 0.34 13.57 8.55 -89.69 -0.77 12.81 15 23 H 0.10 2.30 8.14 -2.39 -0.02 2.29 15 24 H 0.06 1.87 8.05 -2.39 -0.02 1.85 15 25 H 0.09 1.95 8.14 -2.39 -0.02 1.93 15 26 H 0.11 1.89 8.14 -2.38 -0.02 1.87 15 27 H 0.16 2.62 8.06 -2.91 -0.02 2.59 15 28 H 0.17 2.69 8.06 -2.91 -0.02 2.67 15 29 H 0.14 4.04 8.06 -2.91 -0.02 4.02 15 Total: -1.00 -74.14 240.41 3.45 -70.69 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.21 Total: 13.68 kcal Atomic # 6 Polarization: -35.87 SS G_CDS: 2.07 Total: -33.79 kcal Atomic # 7 Polarization: -89.41 SS G_CDS: -1.32 Total: -90.73 kcal Atomic # 9 Polarization: -7.86 SS G_CDS: 0.64 Total: -7.21 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.85 Total: 47.37 kcal Total: -74.14 3.45 -70.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083729806.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.467 kcal (2) G-P(sol) polarization free energy of solvation -74.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds