Wall clock time and date at job start Mon Mar 30 2020 02:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00081 * 2 1 4 4 H 1.48507 * 109.46974 * 239.99654 * 3 2 1 5 5 H 1.48498 * 109.47453 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47284 * 120.00044 * 3 2 1 7 7 C 1.37879 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99674 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00014 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.29966 * 299.99796 * 9 7 2 11 11 N 1.46639 * 109.30313 * 59.58399 * 9 7 2 12 12 C 1.47164 * 110.23525 * 172.63882 * 11 9 7 13 13 C 1.52893 * 108.50987 * 288.71744 * 12 11 9 14 14 C 1.50730 * 109.96484 * 50.33486 * 13 12 11 15 15 C 1.38696 * 118.47556 * 163.29034 * 14 13 12 16 16 C 1.38037 * 120.39989 * 179.79658 * 15 14 13 17 17 C 1.38224 * 119.86320 * 0.02562 * 16 15 14 18 18 C 1.38245 * 119.83707 * 0.09181 * 17 16 15 19 19 F 1.35091 * 119.83927 * 179.97438 * 18 17 16 20 20 C 1.37797 * 121.66013 * 343.24712 * 14 13 12 21 21 H 0.97000 * 119.99920 * 0.02562 * 1 2 3 22 22 H 1.00900 * 110.99670 * 296.04760 * 11 9 7 23 23 H 1.09001 * 109.62727 * 48.41906 * 12 11 9 24 24 H 1.08994 * 109.63220 * 169.01055 * 12 11 9 25 25 H 1.08989 * 109.39253 * 170.48750 * 13 12 11 26 26 H 1.09000 * 109.38799 * 290.19265 * 13 12 11 27 27 H 1.07991 * 119.79634 * 359.79255 * 15 14 13 28 28 H 1.08002 * 120.07094 * 179.97438 * 16 15 14 29 29 H 1.07997 * 120.08270 * 180.10734 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6251 -2.5538 0.8913 11 7 0.4023 -2.5689 -1.1933 12 6 -0.2081 -3.9031 -1.3067 13 6 0.8813 -4.9040 -1.6927 14 6 2.0645 -4.7581 -0.7704 15 6 2.9955 -5.7850 -0.7216 16 6 4.0963 -5.6911 0.1059 17 6 4.2728 -4.5677 0.8917 18 6 3.3448 -3.5440 0.8465 19 9 3.5171 -2.4463 1.6148 20 6 2.2364 -3.6382 0.0139 21 1 -0.4850 0.8400 -0.0004 22 1 -0.3039 -1.8483 -1.1774 23 1 -0.6450 -4.1884 -0.3497 24 1 -0.9807 -3.8883 -2.0753 25 1 0.4857 -5.9168 -1.6164 26 1 1.1973 -4.7169 -2.7189 27 1 2.8583 -6.6633 -1.3347 28 1 4.8178 -6.4941 0.1400 29 1 5.1337 -4.4897 1.5391 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083729808.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:29 Heat of formation + Delta-G solvation = -39.245835 kcal Electronic energy + Delta-G solvation = -15116.068371 eV Core-core repulsion = 12531.271467 eV Total energy + Delta-G solvation = -2584.796903 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.58873 -40.56343 -37.35900 -34.85687 -32.72620 -31.74975 -29.81108 -27.45686 -24.50885 -24.10329 -22.62105 -20.44023 -18.88062 -17.91533 -17.27512 -16.97975 -16.26435 -16.13979 -15.73010 -15.50708 -14.98357 -14.43597 -14.05940 -13.90461 -13.52892 -13.15704 -12.99186 -12.81698 -12.60106 -12.34382 -12.16562 -11.97359 -11.29922 -11.06487 -10.67263 -9.51348 -9.40694 -8.86863 -8.20105 -6.27565 0.37927 0.47090 1.38121 1.40515 1.48293 2.40445 2.79773 3.06517 3.59170 3.88435 3.90464 4.03675 4.21873 4.39296 4.43673 4.59871 4.67005 4.75430 4.96689 5.01635 5.17009 5.25366 5.34027 5.38648 5.52630 5.70122 5.73393 6.03604 6.24544 6.54816 6.86977 7.01362 7.40961 8.89723 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.030190 B = 0.012215 C = 0.009223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.233750 B = 2291.713022 C = 3035.090239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.020 3.980 3 Si 0.960 3.040 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.512 4.512 8 H 0.053 0.947 9 C 0.252 3.748 10 H -0.039 1.039 11 N -0.684 5.684 12 C 0.040 3.960 13 C -0.066 4.066 14 C -0.071 4.071 15 C -0.131 4.131 16 C -0.095 4.095 17 C -0.170 4.170 18 C 0.072 3.928 19 F -0.149 7.149 20 C -0.117 4.117 21 H 0.266 0.734 22 H 0.351 0.649 23 H 0.007 0.993 24 H 0.086 0.914 25 H 0.107 0.893 26 H 0.086 0.914 27 H 0.162 0.838 28 H 0.171 0.829 29 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.490 -11.843 -2.080 12.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.179 4.179 3 Si 0.786 3.214 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.551 4.551 8 H 0.072 0.928 9 C 0.144 3.856 10 H -0.021 1.021 11 N -0.319 5.319 12 C -0.090 4.090 13 C -0.103 4.103 14 C -0.071 4.071 15 C -0.148 4.148 16 C -0.113 4.113 17 C -0.188 4.188 18 C 0.052 3.948 19 F -0.128 7.128 20 C -0.118 4.118 21 H 0.075 0.925 22 H 0.173 0.827 23 H 0.025 0.975 24 H 0.104 0.896 25 H 0.125 0.875 26 H 0.104 0.896 27 H 0.180 0.820 28 H 0.188 0.812 29 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.848 -11.808 -2.482 13.004 hybrid contribution -0.550 1.712 1.192 2.158 sum 4.299 -10.096 -1.290 11.048 Atomic orbital electron populations 1.69753 1.06985 1.27839 1.51959 1.25699 0.95822 1.02352 0.93978 0.85580 0.78435 0.78841 0.78587 1.19749 1.20178 1.20176 1.21349 0.92929 0.90851 1.49958 0.92848 1.17655 0.89568 0.91207 0.87202 1.02144 1.61038 1.25633 1.04111 1.41099 1.22121 0.96675 0.91289 0.98868 1.20577 0.91963 0.99615 0.98111 1.19885 0.98271 0.92489 0.96447 1.21482 0.94050 0.98959 1.00347 1.21277 0.98198 0.97111 0.94692 1.21336 0.99614 0.94084 1.03785 1.18167 0.97227 0.85013 0.94368 1.91443 1.95237 1.52731 1.73394 1.20335 0.96732 0.97137 0.97630 0.92464 0.82711 0.97451 0.89613 0.87497 0.89563 0.82009 0.81172 0.83334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.20 11.50 21.45 0.25 -53.96 15 2 C 0.02 1.17 5.38 84.65 0.46 1.62 15 3 Si 0.96 46.09 29.54 68.60 2.03 48.12 15 4 H -0.27 -12.81 7.11 99.48 0.71 -12.10 15 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 15 6 H -0.28 -13.15 7.11 99.48 0.71 -12.44 15 7 C -0.51 -30.30 7.31 25.60 0.19 -30.11 15 8 H 0.05 3.21 6.12 -2.91 -0.02 3.20 15 9 C 0.25 13.85 2.37 43.45 0.10 13.95 15 10 H -0.04 -2.39 8.14 -2.39 -0.02 -2.41 15 11 N -0.68 -34.47 6.43 -499.65 -3.21 -37.69 15 12 C 0.04 1.57 6.58 86.22 0.57 2.14 15 13 C -0.07 -2.10 5.95 29.82 0.18 -1.92 15 14 C -0.07 -2.61 5.77 -19.85 -0.11 -2.72 15 15 C -0.13 -3.61 9.65 22.33 0.22 -3.40 15 16 C -0.10 -2.48 10.05 22.22 0.22 -2.25 15 17 C -0.17 -5.60 10.02 22.27 0.22 -5.38 15 18 C 0.07 3.19 6.72 22.44 0.15 3.34 15 19 F -0.15 -7.49 14.31 44.97 0.64 -6.84 15 20 C -0.12 -5.48 5.47 -19.82 -0.11 -5.59 15 21 H 0.27 14.77 8.31 -92.71 -0.77 14.00 15 22 H 0.35 19.04 6.85 -89.69 -0.61 18.43 15 23 H 0.01 0.30 8.05 -2.39 -0.02 0.28 15 24 H 0.09 2.86 8.14 -2.39 -0.02 2.84 15 25 H 0.11 2.53 8.14 -2.39 -0.02 2.51 15 26 H 0.09 2.63 8.14 -2.39 -0.02 2.61 15 27 H 0.16 3.06 8.06 -2.92 -0.02 3.04 15 28 H 0.17 2.81 8.06 -2.91 -0.02 2.78 15 29 H 0.15 4.06 8.06 -2.91 -0.02 4.03 15 Total: -1.00 -68.23 244.43 2.33 -65.90 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.55 Total: 14.79 kcal Atomic # 6 Polarization: -32.40 SS G_CDS: 2.08 Total: -30.32 kcal Atomic # 7 Polarization: -88.68 SS G_CDS: -2.97 Total: -91.64 kcal Atomic # 9 Polarization: -7.49 SS G_CDS: 0.64 Total: -6.84 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -68.23 2.33 -65.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083729808.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.651 kcal (2) G-P(sol) polarization free energy of solvation -68.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds