Wall clock time and date at job start Mon Mar 30 2020 02:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86788 * 120.00095 * 2 1 4 4 H 1.48498 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47532 * 120.00350 * 3 2 1 6 6 H 1.48509 * 109.47367 * 240.00088 * 3 2 1 7 7 C 1.37884 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99598 * 16.18335 * 7 2 1 9 9 C 1.50695 * 119.99882 * 196.17795 * 7 2 1 10 10 H 1.09000 * 109.26582 * 305.64586 * 9 7 2 11 11 N 1.46626 * 109.26736 * 65.15558 * 9 7 2 12 12 C 1.47151 * 110.26801 * 172.80078 * 11 9 7 13 13 C 1.52900 * 108.46839 * 288.69415 * 12 11 9 14 14 C 1.50725 * 109.94986 * 50.45769 * 13 12 11 15 15 C 1.38643 * 118.45792 * 163.22638 * 14 13 12 16 16 C 1.38260 * 120.32544 * 179.59006 * 15 14 13 17 17 F 1.35103 * 120.11631 * 180.02562 * 16 15 14 18 18 C 1.38487 * 119.77129 * 0.02562 * 16 15 14 19 19 C 1.37976 * 119.84387 * 0.08956 * 18 16 15 20 20 C 1.37845 * 121.65895 * 342.98335 * 14 13 12 21 21 H 0.97003 * 120.00135 * 174.70443 * 1 2 3 22 22 H 1.00893 * 110.99915 * 296.18941 * 11 9 7 23 23 H 1.08997 * 109.64404 * 169.00703 * 12 11 9 24 24 H 1.08996 * 109.80911 * 48.48854 * 12 11 9 25 25 H 1.08998 * 109.39480 * 290.30277 * 13 12 11 26 26 H 1.09005 * 109.38772 * 170.59569 * 13 12 11 27 27 H 1.07995 * 119.83810 * 359.56777 * 15 14 13 28 28 H 1.07997 * 120.07417 * 180.12020 * 18 16 15 29 29 H 1.08002 * 119.79000 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 1.4966 -2.1107 -0.2616 9 6 3.4668 -1.2202 0.3631 10 1 4.0072 -0.5159 -0.2693 11 7 3.6232 -0.8283 1.7673 12 6 5.0193 -1.0106 2.1949 13 6 5.3014 -2.5096 2.3017 14 6 4.8677 -3.2058 1.0372 15 6 5.3484 -4.4821 0.7877 16 6 4.9689 -5.1597 -0.3562 17 9 5.4395 -6.4034 -0.5950 18 6 4.1048 -4.5591 -1.2565 19 6 3.6291 -3.2879 -1.0081 20 6 4.0100 -2.6072 0.1394 21 1 -0.4850 -0.8365 -0.0775 22 1 3.3225 0.1238 1.9126 23 1 5.1695 -0.5396 3.1664 24 1 5.6913 -0.5627 1.4630 25 1 4.7524 -2.9217 3.1484 26 1 6.3693 -2.6669 2.4534 27 1 6.0228 -4.9491 1.4900 28 1 3.8037 -5.0846 -2.1506 29 1 2.9556 -2.8202 -1.7109 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083729810.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:10 Heat of formation + Delta-G solvation = -23.502747 kcal Electronic energy + Delta-G solvation = -14809.290766 eV Core-core repulsion = 12225.176534 eV Total energy + Delta-G solvation = -2584.114232 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.50379 -39.37723 -35.79901 -33.35146 -31.60349 -29.98200 -28.75555 -25.39163 -22.80695 -22.78936 -20.97921 -19.10930 -17.64042 -16.75190 -16.25698 -15.48863 -15.18603 -14.67841 -14.02197 -13.70258 -13.53535 -13.43165 -12.81521 -12.57555 -12.13868 -11.99839 -11.39040 -11.22184 -10.92051 -10.79165 -10.34439 -10.13769 -10.00659 -9.09622 -8.47004 -8.39523 -7.94061 -7.41033 -6.55723 -4.20700 1.71275 1.73246 3.17002 3.29970 3.45995 4.11002 4.33432 4.66223 4.93983 5.11168 5.24597 5.33798 5.47651 5.64077 5.69365 5.83489 5.94014 6.01025 6.20964 6.32351 6.48590 6.55120 6.63096 6.65662 6.87101 7.10676 7.39284 7.76548 8.20313 8.26838 8.33980 8.78923 9.48621 10.82159 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.036335 B = 0.009793 C = 0.008255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.426009 B = 2858.582648 C = 3391.152589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.034 3.966 3 Si 1.049 2.951 4 H -0.280 1.280 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.582 4.582 8 H 0.065 0.935 9 C 0.218 3.782 10 H 0.008 0.992 11 N -0.683 5.683 12 C 0.044 3.956 13 C -0.069 4.069 14 C -0.058 4.058 15 C -0.162 4.162 16 C 0.073 3.927 17 F -0.152 7.152 18 C -0.165 4.165 19 C -0.073 4.073 20 C -0.039 4.039 21 H 0.271 0.729 22 H 0.339 0.661 23 H 0.066 0.934 24 H 0.023 0.977 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.124 0.876 28 H 0.126 0.874 29 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.499 -3.843 1.111 11.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.173 4.173 3 Si 0.878 3.122 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.621 4.621 8 H 0.083 0.917 9 C 0.111 3.889 10 H 0.025 0.975 11 N -0.319 5.319 12 C -0.086 4.086 13 C -0.107 4.107 14 C -0.059 4.059 15 C -0.181 4.181 16 C 0.054 3.946 17 F -0.131 7.131 18 C -0.184 4.184 19 C -0.092 4.092 20 C -0.039 4.039 21 H 0.081 0.919 22 H 0.161 0.839 23 H 0.084 0.916 24 H 0.041 0.959 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.142 0.858 28 H 0.144 0.856 29 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 10.074 -2.835 1.415 10.560 hybrid contribution 0.652 -1.341 -0.499 1.572 sum 10.726 -4.175 0.916 11.546 Atomic orbital electron populations 1.70817 1.06794 1.31179 1.44183 1.25757 0.96301 1.02240 0.92983 0.83935 0.75371 0.76343 0.76539 1.20544 1.21083 1.20882 1.21929 0.93146 0.96328 1.50666 0.91692 1.18355 0.97197 0.88140 0.85214 0.97531 1.61452 1.17142 1.29626 1.23729 1.21957 0.92055 0.95173 0.99418 1.20482 0.99695 0.95472 0.95040 1.19492 0.96547 0.93300 0.96528 1.20902 1.03987 0.95885 0.97359 1.17539 0.99420 0.80712 0.96953 1.91426 1.87436 1.39559 1.94662 1.21044 1.00127 0.97042 1.00148 1.21169 0.97630 0.92764 0.97614 1.20033 0.93455 0.97621 0.92839 0.91880 0.83916 0.91556 0.95866 0.90180 0.91410 0.85791 0.85576 0.84240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.37 13.70 55.43 0.76 -25.61 15 2 C 0.03 0.93 5.41 -17.81 -0.10 0.83 15 3 Si 1.05 23.67 26.45 -169.99 -4.50 19.18 15 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 5 H -0.28 -5.79 5.61 56.52 0.32 -5.47 15 6 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15 7 C -0.58 -15.60 8.16 -34.44 -0.28 -15.88 15 8 H 0.06 1.88 7.18 -52.49 -0.38 1.50 15 9 C 0.22 5.07 2.01 -70.20 -0.14 4.93 15 10 H 0.01 0.18 6.81 -51.93 -0.35 -0.18 15 11 N -0.68 -14.90 6.45 -109.29 -0.70 -15.60 15 12 C 0.04 0.77 6.58 -3.74 -0.02 0.74 15 13 C -0.07 -1.13 5.94 -27.92 -0.17 -1.30 15 14 C -0.06 -1.09 5.77 -104.60 -0.60 -1.70 15 15 C -0.16 -2.78 9.64 -39.42 -0.38 -3.16 15 16 C 0.07 1.28 7.30 -39.48 -0.29 0.99 15 17 F -0.15 -2.55 17.27 2.25 0.04 -2.52 15 18 C -0.16 -2.91 10.03 -39.59 -0.40 -3.31 15 19 C -0.07 -1.46 8.74 -39.49 -0.35 -1.81 15 20 C -0.04 -0.82 5.46 -104.61 -0.57 -1.40 15 21 H 0.27 8.00 8.73 -40.82 -0.36 7.64 15 22 H 0.34 7.41 5.35 -39.30 -0.21 7.20 15 23 H 0.07 0.99 8.14 -51.93 -0.42 0.57 15 24 H 0.02 0.40 8.05 -51.93 -0.42 -0.02 15 25 H 0.08 1.29 8.14 -51.93 -0.42 0.86 15 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 15 27 H 0.12 1.79 8.06 -52.49 -0.42 1.37 15 28 H 0.13 1.91 8.06 -52.49 -0.42 1.49 15 29 H 0.14 2.82 7.17 -52.49 -0.38 2.44 15 LS Contribution 242.56 15.07 3.66 3.66 Total: -1.00 -28.64 242.56 -7.13 -35.76 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -3.09 Total: 6.18 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: -3.29 Total: -21.04 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 0.05 Total: -41.22 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.04 Total: -2.52 kcal Atomic # 14 Polarization: 23.67 SS G_CDS: -4.50 Total: 19.18 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -28.64 -7.13 -35.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083729810.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.260 kcal (2) G-P(sol) polarization free energy of solvation -28.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds