Wall clock time and date at job start Mon Mar 30 2020 02:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86788 * 120.00095 * 2 1 4 4 H 1.48498 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47532 * 120.00350 * 3 2 1 6 6 H 1.48509 * 109.47367 * 240.00088 * 3 2 1 7 7 C 1.37884 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99598 * 16.18335 * 7 2 1 9 9 C 1.50695 * 119.99882 * 196.17795 * 7 2 1 10 10 H 1.09000 * 109.26582 * 305.64586 * 9 7 2 11 11 N 1.46626 * 109.26736 * 65.15558 * 9 7 2 12 12 C 1.47151 * 110.26801 * 172.80078 * 11 9 7 13 13 C 1.52900 * 108.46839 * 288.69415 * 12 11 9 14 14 C 1.50725 * 109.94986 * 50.45769 * 13 12 11 15 15 C 1.38643 * 118.45792 * 163.22638 * 14 13 12 16 16 C 1.38260 * 120.32544 * 179.59006 * 15 14 13 17 17 F 1.35103 * 120.11631 * 180.02562 * 16 15 14 18 18 C 1.38487 * 119.77129 * 0.02562 * 16 15 14 19 19 C 1.37976 * 119.84387 * 0.08956 * 18 16 15 20 20 C 1.37845 * 121.65895 * 342.98335 * 14 13 12 21 21 H 0.97003 * 120.00135 * 174.70443 * 1 2 3 22 22 H 1.00893 * 110.99915 * 296.18941 * 11 9 7 23 23 H 1.08997 * 109.64404 * 169.00703 * 12 11 9 24 24 H 1.08996 * 109.80911 * 48.48854 * 12 11 9 25 25 H 1.08998 * 109.39480 * 290.30277 * 13 12 11 26 26 H 1.09005 * 109.38772 * 170.59569 * 13 12 11 27 27 H 1.07995 * 119.83810 * 359.56777 * 15 14 13 28 28 H 1.07997 * 120.07417 * 180.12020 * 18 16 15 29 29 H 1.08002 * 119.79000 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 1.4966 -2.1107 -0.2616 9 6 3.4668 -1.2202 0.3631 10 1 4.0072 -0.5159 -0.2693 11 7 3.6232 -0.8283 1.7673 12 6 5.0193 -1.0106 2.1949 13 6 5.3014 -2.5096 2.3017 14 6 4.8677 -3.2058 1.0372 15 6 5.3484 -4.4821 0.7877 16 6 4.9689 -5.1597 -0.3562 17 9 5.4395 -6.4034 -0.5950 18 6 4.1048 -4.5591 -1.2565 19 6 3.6291 -3.2879 -1.0081 20 6 4.0100 -2.6072 0.1394 21 1 -0.4850 -0.8365 -0.0775 22 1 3.3225 0.1238 1.9126 23 1 5.1695 -0.5396 3.1664 24 1 5.6913 -0.5627 1.4630 25 1 4.7524 -2.9217 3.1484 26 1 6.3693 -2.6669 2.4534 27 1 6.0228 -4.9491 1.4900 28 1 3.8037 -5.0846 -2.1506 29 1 2.9556 -2.8202 -1.7109 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083729810.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:10 Heat of formation + Delta-G solvation = -42.288349 kcal Electronic energy + Delta-G solvation = -14810.105371 eV Core-core repulsion = 12225.176534 eV Total energy + Delta-G solvation = -2584.928837 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.86876 -40.86204 -37.35202 -35.14802 -33.34869 -31.48977 -30.24280 -27.18822 -24.40303 -24.22597 -22.61373 -20.58578 -19.67416 -18.15738 -17.75733 -17.03065 -16.56605 -16.14579 -15.55195 -15.27174 -15.18758 -15.11754 -14.31556 -13.99704 -13.76213 -13.55330 -12.91256 -12.80501 -12.56991 -12.28930 -11.92699 -11.76446 -11.58725 -11.04473 -10.51036 -9.82778 -9.44326 -9.09161 -8.70367 -6.38949 0.24651 0.30193 1.37109 1.49935 1.67862 2.44953 2.63114 3.03224 3.26592 3.65037 3.75652 3.91184 4.08501 4.21006 4.32257 4.50441 4.60690 4.65096 4.72944 4.93510 5.03729 5.09612 5.17216 5.20110 5.38868 5.55668 5.88483 6.01467 6.08639 6.43864 6.57688 6.71667 7.39624 8.63011 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.036335 B = 0.009793 C = 0.008255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.426009 B = 2858.582648 C = 3391.152589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.016 4.016 3 Si 1.089 2.911 4 H -0.285 1.285 5 H -0.247 1.247 6 H -0.268 1.268 7 C -0.583 4.583 8 H 0.025 0.975 9 C 0.223 3.777 10 H 0.004 0.996 11 N -0.700 5.700 12 C 0.040 3.960 13 C -0.068 4.068 14 C -0.062 4.062 15 C -0.153 4.153 16 C 0.074 3.926 17 F -0.145 7.145 18 C -0.163 4.163 19 C -0.091 4.091 20 C -0.074 4.074 21 H 0.252 0.748 22 H 0.335 0.665 23 H 0.096 0.904 24 H 0.031 0.969 25 H 0.084 0.916 26 H 0.108 0.892 27 H 0.159 0.841 28 H 0.147 0.853 29 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.504 -4.116 2.394 14.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.215 4.215 3 Si 0.911 3.089 4 H -0.211 1.211 5 H -0.172 1.172 6 H -0.193 1.193 7 C -0.621 4.621 8 H 0.043 0.957 9 C 0.115 3.885 10 H 0.021 0.979 11 N -0.336 5.336 12 C -0.089 4.089 13 C -0.105 4.105 14 C -0.063 4.063 15 C -0.172 4.172 16 C 0.055 3.945 17 F -0.123 7.123 18 C -0.182 4.182 19 C -0.110 4.110 20 C -0.075 4.075 21 H 0.061 0.939 22 H 0.156 0.844 23 H 0.114 0.886 24 H 0.049 0.951 25 H 0.102 0.898 26 H 0.126 0.874 27 H 0.177 0.823 28 H 0.165 0.835 29 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 13.104 -3.143 2.709 13.745 hybrid contribution -0.254 -1.417 -0.925 1.711 sum 12.850 -4.560 1.784 13.752 Atomic orbital electron populations 1.70964 1.08134 1.30027 1.47672 1.27193 0.96153 1.06097 0.92031 0.83459 0.74853 0.71929 0.78707 1.21125 1.17188 1.19327 1.22080 0.95407 0.94760 1.49862 0.95665 1.18118 0.94449 0.89789 0.86118 0.97872 1.61223 1.20625 1.29399 1.22348 1.22160 0.89234 0.96575 1.00929 1.20601 1.02192 0.94162 0.93577 1.19792 0.95657 0.94001 0.96830 1.21210 1.03538 0.95024 0.97425 1.17637 0.98932 0.80900 0.97003 1.91450 1.87224 1.39041 1.94631 1.21182 0.99784 0.96120 1.01103 1.21082 0.98291 0.94003 0.97609 1.20058 0.95665 0.97293 0.94474 0.93853 0.84366 0.88555 0.95124 0.89782 0.87365 0.82318 0.83503 0.86172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.30 13.70 21.45 0.29 -57.01 15 2 C -0.02 -0.88 5.41 84.66 0.46 -0.42 15 3 Si 1.09 47.60 26.45 68.60 1.81 49.42 15 4 H -0.29 -12.68 7.11 99.48 0.71 -11.97 15 5 H -0.25 -9.25 5.61 99.48 0.56 -8.69 15 6 H -0.27 -10.99 7.11 99.48 0.71 -10.28 15 7 C -0.58 -32.41 8.16 25.60 0.21 -32.20 15 8 H 0.02 1.55 7.18 -2.91 -0.02 1.53 15 9 C 0.22 10.35 2.01 43.45 0.09 10.43 15 10 H 0.00 0.19 6.81 -2.39 -0.02 0.18 15 11 N -0.70 -29.32 6.45 -499.69 -3.22 -32.54 15 12 C 0.04 1.25 6.58 86.22 0.57 1.82 15 13 C -0.07 -1.93 5.94 29.82 0.18 -1.75 15 14 C -0.06 -2.17 5.77 -19.85 -0.11 -2.28 15 15 C -0.15 -4.68 9.64 22.37 0.22 -4.46 15 16 C 0.07 2.41 7.30 22.33 0.16 2.57 15 17 F -0.14 -4.40 17.27 44.97 0.78 -3.63 15 18 C -0.16 -5.60 10.03 22.27 0.22 -5.38 15 19 C -0.09 -3.70 8.74 22.33 0.20 -3.51 15 20 C -0.07 -3.12 5.46 -19.86 -0.11 -3.23 15 21 H 0.25 15.89 8.73 -92.71 -0.81 15.08 15 22 H 0.33 13.99 5.35 -89.70 -0.48 13.51 15 23 H 0.10 2.43 8.14 -2.39 -0.02 2.41 15 24 H 0.03 0.92 8.05 -2.39 -0.02 0.90 15 25 H 0.08 2.35 8.14 -2.39 -0.02 2.33 15 26 H 0.11 2.22 8.14 -2.38 -0.02 2.20 15 27 H 0.16 3.72 8.06 -2.91 -0.02 3.69 15 28 H 0.15 4.28 8.06 -2.91 -0.02 4.25 15 29 H 0.12 5.19 7.17 -2.91 -0.02 5.17 15 Total: -1.00 -64.08 242.56 2.23 -61.85 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 0.50 Total: 20.32 kcal Atomic # 6 Polarization: -40.48 SS G_CDS: 2.07 Total: -38.41 kcal Atomic # 7 Polarization: -86.62 SS G_CDS: -2.93 Total: -89.55 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.78 Total: -3.63 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 1.81 Total: 49.42 kcal Total: -64.08 2.23 -61.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083729810.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.557 kcal (2) G-P(sol) polarization free energy of solvation -64.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds