Wall clock time and date at job start Mon Mar 30 2020 02:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48495 * 109.47555 * 270.00498 * 3 2 1 5 5 H 1.48503 * 109.46814 * 30.00387 * 3 2 1 6 6 H 1.48496 * 109.47318 * 149.99879 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99394 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.26730 * 60.49141 * 9 7 2 11 11 N 1.46627 * 109.27041 * 301.01122 * 9 7 2 12 12 C 1.47173 * 110.25123 * 187.20463 * 11 9 7 13 13 C 1.52890 * 108.49107 * 71.27809 * 12 11 9 14 14 C 1.50723 * 109.96078 * 309.57568 * 13 12 11 15 15 C 1.38642 * 118.46471 * 196.74549 * 14 13 12 16 16 C 1.38256 * 120.33126 * 180.39492 * 15 14 13 17 17 F 1.35103 * 120.11769 * 180.02562 * 16 15 14 18 18 C 1.38493 * 119.76984 * 359.97438 * 16 15 14 19 19 C 1.37969 * 119.84128 * 359.91673 * 18 16 15 20 20 C 1.37856 * 121.65770 * 16.95625 * 14 13 12 21 21 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 22 22 H 1.00899 * 111.00108 * 310.63007 * 11 9 7 23 23 H 1.08997 * 109.64909 * 311.57106 * 12 11 9 24 24 H 1.09006 * 109.78465 * 191.06520 * 12 11 9 25 25 H 1.08999 * 109.39132 * 189.42604 * 13 12 11 26 26 H 1.09003 * 109.39034 * 69.72428 * 13 12 11 27 27 H 1.07998 * 119.83698 * 0.39529 * 15 14 13 28 28 H 1.07998 * 120.07816 * 179.97438 * 18 16 15 29 29 H 1.08007 * 119.79163 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6319 -2.5570 -0.8958 11 7 0.3919 -2.5619 1.1861 12 6 -0.2230 -3.8941 1.2999 13 6 0.8607 -4.8959 1.6994 14 6 2.0510 -4.7581 0.7850 15 6 2.9787 -5.7878 0.7482 16 6 4.0891 -5.6982 -0.0705 17 9 4.9901 -6.7044 -0.1034 18 6 4.2742 -4.5738 -0.8576 19 6 3.3491 -3.5508 -0.8218 20 6 2.2339 -3.6406 -0.0012 21 1 -0.4849 0.8400 0.0004 22 1 0.9101 -2.3303 2.0203 23 1 -0.6527 -4.1826 0.3407 24 1 -1.0036 -3.8764 2.0605 25 1 0.4629 -5.9080 1.6255 26 1 1.1697 -4.7042 2.7270 27 1 2.8332 -6.6643 1.3622 28 1 5.1400 -4.4984 -1.4987 29 1 3.4940 -2.6745 -1.4363 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083729812.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:14 Heat of formation + Delta-G solvation = -24.847794 kcal Electronic energy + Delta-G solvation = -14767.249300 eV Core-core repulsion = 12183.076742 eV Total energy + Delta-G solvation = -2584.172557 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.47874 -39.35618 -35.60491 -33.21210 -31.33021 -29.67707 -28.39748 -25.41950 -22.83197 -22.60857 -21.25981 -19.42261 -16.83291 -16.60829 -15.69765 -15.34165 -15.17281 -14.60575 -13.90294 -13.72846 -13.33611 -13.12061 -12.63543 -12.47643 -11.96976 -11.71423 -11.29636 -11.04692 -10.85670 -10.70319 -10.61282 -10.19980 -9.89738 -9.16326 -8.54099 -8.37545 -7.75456 -7.02324 -5.97125 -4.13283 1.73737 1.77601 3.29060 3.37012 3.39488 4.14637 4.42182 4.69268 5.16113 5.18809 5.28751 5.53499 5.64283 5.69015 5.80804 5.91841 6.03169 6.07547 6.40257 6.49120 6.57317 6.67674 6.75401 6.92286 7.16677 7.33389 7.50386 7.81694 8.07947 8.46308 8.81885 8.99771 9.55908 11.06443 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.032567 B = 0.009603 C = 0.007719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.551798 B = 2914.969142 C = 3626.329146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.083 3.917 3 Si 0.885 3.115 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.541 4.541 8 H 0.060 0.940 9 C 0.249 3.751 10 H 0.056 0.944 11 N -0.641 5.641 12 C 0.051 3.949 13 C -0.116 4.116 14 C -0.069 4.069 15 C -0.160 4.160 16 C 0.068 3.932 17 F -0.153 7.153 18 C -0.165 4.165 19 C -0.075 4.075 20 C -0.080 4.080 21 H 0.258 0.742 22 H 0.328 0.672 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.121 0.879 28 H 0.124 0.876 29 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.201 -7.961 1.124 8.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.124 4.124 3 Si 0.713 3.287 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.579 4.579 8 H 0.078 0.922 9 C 0.141 3.859 10 H 0.073 0.927 11 N -0.268 5.268 12 C -0.080 4.080 13 C -0.155 4.155 14 C -0.070 4.070 15 C -0.179 4.179 16 C 0.049 3.951 17 F -0.132 7.132 18 C -0.184 4.184 19 C -0.093 4.093 20 C -0.083 4.083 21 H 0.068 0.932 22 H 0.145 0.855 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.139 0.861 28 H 0.142 0.858 29 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.468 -7.571 0.816 8.005 hybrid contribution 1.555 0.022 0.336 1.591 sum 4.023 -7.549 1.152 8.632 Atomic orbital electron populations 1.70111 1.05658 1.26004 1.46008 1.24980 0.94681 0.98715 0.94046 0.86728 0.80027 0.83874 0.78096 1.20666 1.21208 1.19949 1.21001 0.92444 0.89368 1.55112 0.92162 1.18239 0.87340 0.89076 0.91217 0.92670 1.61300 1.37369 1.22024 1.06061 1.22102 0.95471 0.89724 1.00719 1.21273 0.95121 1.01271 0.97856 1.19523 0.96022 0.93328 0.98092 1.20919 0.94892 1.00619 1.01509 1.17541 0.89505 0.86769 1.01245 1.91421 1.66571 1.59395 1.95845 1.21097 1.01726 0.93984 1.01567 1.21215 0.92529 0.97381 0.98184 1.21453 0.97260 0.96206 0.93360 0.93209 0.85493 0.91849 0.91808 0.91565 0.91160 0.86068 0.85763 0.84255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.32 12.72 55.43 0.70 -22.62 15 2 C 0.08 2.19 5.38 -17.82 -0.10 2.10 15 3 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 15 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 15 6 H -0.27 -6.29 7.11 56.52 0.40 -5.88 15 7 C -0.54 -13.88 7.84 -34.44 -0.27 -14.15 15 8 H 0.06 1.53 6.70 -52.49 -0.35 1.18 15 9 C 0.25 5.90 2.40 -70.19 -0.17 5.73 15 10 H 0.06 1.46 8.14 -51.93 -0.42 1.04 15 11 N -0.64 -14.41 5.88 -109.27 -0.64 -15.05 15 12 C 0.05 0.93 6.62 -3.73 -0.02 0.90 15 13 C -0.12 -1.89 5.82 -27.93 -0.16 -2.05 15 14 C -0.07 -1.28 5.77 -104.60 -0.60 -1.89 15 15 C -0.16 -2.76 9.64 -39.43 -0.38 -3.14 15 16 C 0.07 1.20 7.30 -39.48 -0.29 0.91 15 17 F -0.15 -2.60 17.27 2.25 0.04 -2.56 15 18 C -0.16 -2.87 10.03 -39.59 -0.40 -3.27 15 19 C -0.07 -1.45 8.72 -39.49 -0.34 -1.79 15 20 C -0.08 -1.67 5.47 -104.61 -0.57 -2.24 15 21 H 0.26 6.85 8.31 -40.82 -0.34 6.51 15 22 H 0.33 7.38 8.55 -39.29 -0.34 7.05 15 23 H 0.06 1.19 8.05 -51.93 -0.42 0.77 15 24 H 0.06 1.06 8.14 -51.93 -0.42 0.64 15 25 H 0.07 0.93 8.14 -51.93 -0.42 0.51 15 26 H 0.07 1.09 8.14 -51.93 -0.42 0.66 15 27 H 0.12 1.80 8.06 -52.49 -0.42 1.38 15 28 H 0.12 1.86 8.06 -52.49 -0.42 1.43 15 29 H 0.14 2.69 7.08 -52.48 -0.37 2.32 15 LS Contribution 249.08 15.07 3.75 3.75 Total: -1.00 -27.05 249.08 -7.62 -34.68 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -3.15 Total: 5.39 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: -3.31 Total: -18.90 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.06 Total: -37.67 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.04 Total: -2.56 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -27.05 -7.62 -34.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083729812.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.828 kcal (2) G-P(sol) polarization free energy of solvation -27.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds