Wall clock time and date at job start Mon Mar 30 2020 02:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48495 * 109.47555 * 270.00498 * 3 2 1 5 5 H 1.48503 * 109.46814 * 30.00387 * 3 2 1 6 6 H 1.48496 * 109.47318 * 149.99879 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99394 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.26730 * 60.49141 * 9 7 2 11 11 N 1.46627 * 109.27041 * 301.01122 * 9 7 2 12 12 C 1.47173 * 110.25123 * 187.20463 * 11 9 7 13 13 C 1.52890 * 108.49107 * 71.27809 * 12 11 9 14 14 C 1.50723 * 109.96078 * 309.57568 * 13 12 11 15 15 C 1.38642 * 118.46471 * 196.74549 * 14 13 12 16 16 C 1.38256 * 120.33126 * 180.39492 * 15 14 13 17 17 F 1.35103 * 120.11769 * 180.02562 * 16 15 14 18 18 C 1.38493 * 119.76984 * 359.97438 * 16 15 14 19 19 C 1.37969 * 119.84128 * 359.91673 * 18 16 15 20 20 C 1.37856 * 121.65770 * 16.95625 * 14 13 12 21 21 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 22 22 H 1.00899 * 111.00108 * 310.63007 * 11 9 7 23 23 H 1.08997 * 109.64909 * 311.57106 * 12 11 9 24 24 H 1.09006 * 109.78465 * 191.06520 * 12 11 9 25 25 H 1.08999 * 109.39132 * 189.42604 * 13 12 11 26 26 H 1.09003 * 109.39034 * 69.72428 * 13 12 11 27 27 H 1.07998 * 119.83698 * 0.39529 * 15 14 13 28 28 H 1.07998 * 120.07816 * 179.97438 * 18 16 15 29 29 H 1.08007 * 119.79163 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6319 -2.5570 -0.8958 11 7 0.3919 -2.5619 1.1861 12 6 -0.2230 -3.8941 1.2999 13 6 0.8607 -4.8959 1.6994 14 6 2.0510 -4.7581 0.7850 15 6 2.9787 -5.7878 0.7482 16 6 4.0891 -5.6982 -0.0705 17 9 4.9901 -6.7044 -0.1034 18 6 4.2742 -4.5738 -0.8576 19 6 3.3491 -3.5508 -0.8218 20 6 2.2339 -3.6406 -0.0012 21 1 -0.4849 0.8400 0.0004 22 1 0.9101 -2.3303 2.0203 23 1 -0.6527 -4.1826 0.3407 24 1 -1.0036 -3.8764 2.0605 25 1 0.4629 -5.9080 1.6255 26 1 1.1697 -4.7042 2.7270 27 1 2.8332 -6.6643 1.3622 28 1 5.1400 -4.4984 -1.4987 29 1 3.4940 -2.6745 -1.4363 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083729812.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:13 Heat of formation + Delta-G solvation = -40.735695 kcal Electronic energy + Delta-G solvation = -14767.938251 eV Core-core repulsion = 12183.076742 eV Total energy + Delta-G solvation = -2584.861508 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.83839 -40.85037 -37.16635 -34.96992 -33.04173 -31.19151 -29.91228 -27.25514 -24.38719 -24.13720 -22.84214 -20.93723 -18.61164 -18.10198 -17.18383 -16.92499 -16.55070 -16.35871 -15.49635 -15.22488 -14.90360 -14.54749 -14.15663 -14.06429 -13.68905 -13.13270 -12.91322 -12.81232 -12.52981 -12.37992 -12.06980 -11.84563 -11.67253 -10.98172 -10.54649 -9.76752 -9.28627 -8.69082 -7.97367 -6.18841 0.29792 0.34538 1.45821 1.48332 1.56551 2.47164 2.71334 3.24730 3.29883 3.79614 3.92653 4.02662 4.20937 4.24451 4.33837 4.49741 4.64451 4.70443 5.01812 5.08628 5.14322 5.22548 5.28939 5.36060 5.52184 5.67668 5.78575 6.04152 6.22531 6.63420 7.07385 7.09433 7.53371 9.05599 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.032567 B = 0.009603 C = 0.007719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.551798 B = 2914.969142 C = 3626.329146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.038 3.962 3 Si 0.947 3.053 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.271 1.271 7 C -0.548 4.548 8 H 0.057 0.943 9 C 0.256 3.744 10 H 0.013 0.987 11 N -0.662 5.662 12 C 0.051 3.949 13 C -0.107 4.107 14 C -0.073 4.073 15 C -0.154 4.154 16 C 0.070 3.930 17 F -0.147 7.147 18 C -0.161 4.161 19 C -0.087 4.087 20 C -0.109 4.109 21 H 0.256 0.744 22 H 0.325 0.675 23 H 0.051 0.949 24 H 0.083 0.917 25 H 0.098 0.902 26 H 0.085 0.915 27 H 0.152 0.848 28 H 0.149 0.851 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.234 -9.338 1.974 10.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.167 4.167 3 Si 0.773 3.227 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.586 4.586 8 H 0.075 0.925 9 C 0.148 3.852 10 H 0.031 0.969 11 N -0.289 5.289 12 C -0.079 4.079 13 C -0.146 4.146 14 C -0.073 4.073 15 C -0.173 4.173 16 C 0.051 3.949 17 F -0.126 7.126 18 C -0.179 4.179 19 C -0.106 4.106 20 C -0.111 4.111 21 H 0.065 0.935 22 H 0.142 0.858 23 H 0.070 0.930 24 H 0.101 0.899 25 H 0.116 0.884 26 H 0.103 0.897 27 H 0.170 0.830 28 H 0.167 0.833 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.512 -8.962 1.662 9.768 hybrid contribution 1.255 0.356 0.049 1.306 sum 4.767 -8.606 1.712 9.986 Atomic orbital electron populations 1.70237 1.06991 1.26488 1.47585 1.25657 0.95357 1.01704 0.93943 0.85755 0.78767 0.80130 0.78026 1.20320 1.21245 1.19592 1.21305 0.92506 0.90673 1.54161 0.92459 1.17843 0.87422 0.89769 0.90194 0.96936 1.61080 1.37310 1.25149 1.05321 1.22132 0.96438 0.88463 1.00870 1.21221 0.93389 1.02113 0.97876 1.19739 0.97109 0.92711 0.97755 1.21166 0.93967 1.00934 1.01226 1.17653 0.89642 0.86712 1.00930 1.91444 1.66336 1.59013 1.95764 1.21256 1.01802 0.93251 1.01609 1.21170 0.93056 0.97998 0.98364 1.21247 0.97578 0.96567 0.95709 0.93463 0.85808 0.93033 0.89863 0.88408 0.89684 0.83026 0.83325 0.85256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.78 12.72 21.45 0.27 -49.51 15 2 C 0.04 2.01 5.38 84.66 0.46 2.47 15 3 Si 0.95 42.36 29.54 68.60 2.03 44.38 15 4 H -0.28 -12.16 7.11 99.48 0.71 -11.45 15 5 H -0.29 -12.75 7.11 99.48 0.71 -12.04 15 6 H -0.27 -11.86 7.11 99.48 0.71 -11.16 15 7 C -0.55 -28.83 7.84 25.60 0.20 -28.63 15 8 H 0.06 2.97 6.70 -2.91 -0.02 2.95 15 9 C 0.26 12.50 2.40 43.46 0.10 12.61 15 10 H 0.01 0.73 8.14 -2.39 -0.02 0.71 15 11 N -0.66 -30.14 5.88 -499.62 -2.94 -33.08 15 12 C 0.05 1.82 6.62 86.21 0.57 2.39 15 13 C -0.11 -3.20 5.82 29.82 0.17 -3.02 15 14 C -0.07 -2.55 5.77 -19.85 -0.11 -2.67 15 15 C -0.15 -4.79 9.64 22.37 0.22 -4.57 15 16 C 0.07 2.24 7.30 22.33 0.16 2.40 15 17 F -0.15 -4.47 17.27 44.97 0.78 -3.69 15 18 C -0.16 -5.29 10.03 22.27 0.22 -5.07 15 19 C -0.09 -3.37 8.72 22.33 0.19 -3.18 15 20 C -0.11 -4.52 5.47 -19.85 -0.11 -4.62 15 21 H 0.26 13.93 8.31 -92.71 -0.77 13.16 15 22 H 0.32 14.75 8.55 -89.69 -0.77 13.99 15 23 H 0.05 1.94 8.05 -2.39 -0.02 1.92 15 24 H 0.08 2.63 8.14 -2.38 -0.02 2.61 15 25 H 0.10 2.34 8.14 -2.39 -0.02 2.32 15 26 H 0.08 2.33 8.14 -2.39 -0.02 2.31 15 27 H 0.15 3.77 8.06 -2.91 -0.02 3.74 15 28 H 0.15 4.07 8.06 -2.91 -0.02 4.05 15 29 H 0.13 5.13 7.08 -2.91 -0.02 5.11 15 Total: -1.00 -58.19 249.08 2.62 -55.57 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.40 Total: 18.22 kcal Atomic # 6 Polarization: -33.97 SS G_CDS: 2.08 Total: -31.89 kcal Atomic # 7 Polarization: -79.92 SS G_CDS: -2.66 Total: -82.59 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.78 Total: -3.69 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Total: -58.19 2.62 -55.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083729812.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.834 kcal (2) G-P(sol) polarization free energy of solvation -58.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds