Wall clock time and date at job start Mon Mar 30 2020 02:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47240 * 2 1 4 4 C 1.50691 * 109.47202 * 119.99783 * 2 1 3 5 5 H 1.08008 * 119.99696 * 114.72922 * 4 2 1 6 6 C 1.37879 * 120.00521 * 294.73428 * 4 2 1 7 7 N 1.31519 * 119.99827 * 150.81497 * 6 4 2 8 8 Si 1.86800 * 119.99765 * 330.81863 * 6 4 2 9 9 H 1.48498 * 109.47070 * 179.97438 * 8 6 4 10 10 H 1.48496 * 109.47089 * 299.99805 * 8 6 4 11 11 H 1.48499 * 109.47045 * 59.99931 * 8 6 4 12 12 C 1.50697 * 109.46983 * 240.00554 * 2 1 3 13 13 C 1.38260 * 119.99698 * 292.91217 * 12 2 1 14 14 C 1.38213 * 119.99962 * 179.97438 * 13 12 2 15 15 C 1.38258 * 120.00278 * 0.02562 * 14 13 12 16 16 C 1.38215 * 119.99742 * 359.97438 * 15 14 13 17 17 C 1.38213 * 120.00574 * 112.64936 * 12 2 1 18 18 N 1.48018 * 119.99415 * 359.97438 * 17 12 2 19 19 O 1.21797 * 120.00477 * 320.03808 * 18 17 12 20 20 O 1.21803 * 119.99488 * 140.03906 * 18 17 12 21 21 H 1.08998 * 109.47508 * 63.89308 * 1 2 3 22 22 H 1.08993 * 109.47362 * 183.89194 * 1 2 3 23 23 H 1.09006 * 109.47217 * 303.89193 * 1 2 3 24 24 H 0.96993 * 120.00356 * 354.97522 * 7 6 4 25 25 H 1.08004 * 120.00016 * 0.02562 * 13 12 2 26 26 H 1.08006 * 119.99831 * 180.02562 * 14 13 12 27 27 H 1.07991 * 119.99970 * 179.97438 * 15 14 13 28 28 H 1.07990 * 120.00142 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.5812 -1.6354 1.1336 6 6 1.7911 -0.1794 2.4798 7 7 1.6837 -0.9739 3.5224 8 14 1.6169 1.6684 2.6916 9 1 1.3627 1.9809 4.1209 10 1 2.8681 2.3371 2.2531 11 1 0.4806 2.1559 1.8692 12 6 2.0323 -0.7103 -1.2305 13 6 1.8231 -2.0690 -1.3781 14 6 2.2833 -2.7204 -2.5069 15 6 2.9533 -2.0135 -3.4883 16 6 3.1623 -0.6552 -3.3407 17 6 2.6972 -0.0026 -2.2141 18 7 2.9154 1.4532 -2.0589 19 8 2.0355 2.1547 -1.5930 20 8 3.9750 1.9495 -2.3973 21 1 -0.3634 0.4522 -0.9228 22 1 -0.3634 -1.0252 0.0697 23 1 -0.3634 0.5731 0.8531 24 1 1.7012 -1.9363 3.4026 25 1 1.2995 -2.6212 -0.6118 26 1 2.1196 -3.7817 -2.6224 27 1 3.3132 -2.5225 -4.3700 28 1 3.6859 -0.1031 -4.1069 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083966522.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:12 Heat of formation + Delta-G solvation = 14.780491 kcal Electronic energy + Delta-G solvation = -15018.365519 eV Core-core repulsion = 12423.538584 eV Total energy + Delta-G solvation = -2594.826935 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.74717 -39.13273 -36.13921 -34.68890 -32.04023 -31.52094 -29.25553 -25.97912 -24.88030 -23.20222 -21.99771 -20.06122 -18.50723 -18.17705 -17.62557 -17.02279 -15.87019 -14.86396 -14.32222 -13.94709 -13.48674 -13.12049 -12.66935 -12.30004 -11.94824 -11.69504 -11.31342 -11.11042 -10.86885 -10.64299 -10.57187 -10.39586 -9.91498 -9.70826 -9.31002 -9.15203 -8.63667 -8.18149 -6.62915 -4.20540 0.49823 1.37909 1.63465 1.95540 3.42718 3.49175 3.64423 3.68193 4.45291 4.76809 4.79909 5.02170 5.07157 5.30582 5.37312 5.62976 5.92941 6.09145 6.27556 6.37136 6.50116 6.57796 6.60295 6.69608 6.98768 7.09011 7.31043 7.88788 8.15790 8.23608 8.73278 9.41656 10.73375 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.028056 B = 0.012324 C = 0.009609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.756556 B = 2271.502143 C = 2913.089603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.028 3.972 3 H 0.051 0.949 4 C -0.623 4.623 5 H 0.061 0.939 6 C 0.052 3.948 7 N -0.881 5.881 8 Si 1.022 2.978 9 H -0.283 1.283 10 H -0.281 1.281 11 H -0.270 1.270 12 C 0.036 3.964 13 C -0.105 4.105 14 C -0.081 4.081 15 C -0.141 4.141 16 C -0.068 4.068 17 C -0.053 4.053 18 N 0.031 4.969 19 O -0.143 6.143 20 O -0.179 6.179 21 H 0.028 0.972 22 H 0.046 0.954 23 H 0.056 0.944 24 H 0.271 0.729 25 H 0.146 0.854 26 H 0.133 0.867 27 H 0.136 0.864 28 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.218 -2.246 -12.270 12.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.009 3.991 3 H 0.069 0.931 4 C -0.659 4.659 5 H 0.079 0.921 6 C -0.156 4.156 7 N -0.512 5.512 8 Si 0.849 3.151 9 H -0.208 1.208 10 H -0.207 1.207 11 H -0.196 1.196 12 C 0.035 3.965 13 C -0.123 4.123 14 C -0.099 4.099 15 C -0.160 4.160 16 C -0.087 4.087 17 C -0.135 4.135 18 N 0.552 4.448 19 O -0.363 6.363 20 O -0.392 6.392 21 H 0.047 0.953 22 H 0.065 0.935 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.164 0.836 26 H 0.151 0.849 27 H 0.154 0.846 28 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.490 -1.786 -11.203 11.355 hybrid contribution 0.457 -0.908 -1.109 1.505 sum -0.033 -2.694 -12.312 12.604 Atomic orbital electron populations 1.21985 0.96528 1.00589 0.99611 1.18601 0.93699 0.96914 0.89886 0.93130 1.21731 1.42615 1.11249 0.90332 0.92089 1.25656 0.92128 1.05894 0.91954 1.70888 1.41085 1.05967 1.33262 0.84309 0.78206 0.76209 0.76374 1.20808 1.20661 1.19587 1.20387 0.88334 0.94200 0.93627 1.21205 1.00347 0.92982 0.97807 1.21537 0.94880 1.00371 0.93093 1.20938 1.01897 0.92622 1.00510 1.20762 0.97107 0.95215 0.95638 1.20993 1.11542 0.80001 1.00970 1.43564 0.99756 1.03652 0.97868 1.94499 1.37748 1.60271 1.43805 1.94471 1.14651 1.77055 1.52981 0.95286 0.93511 0.92483 0.91866 0.83585 0.84908 0.84610 0.84518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 8.76 37.16 0.33 -2.50 15 2 C 0.03 0.67 1.64 -92.93 -0.15 0.52 15 3 H 0.05 1.29 3.79 -51.93 -0.20 1.09 15 4 C -0.62 -16.88 8.24 -34.44 -0.28 -17.17 15 5 H 0.06 1.74 7.54 -52.48 -0.40 1.35 15 6 C 0.05 1.47 5.19 -17.82 -0.09 1.38 15 7 N -0.88 -26.00 13.70 55.43 0.76 -25.24 15 8 Si 1.02 25.40 26.75 -169.99 -4.55 20.85 15 9 H -0.28 -6.94 7.11 56.52 0.40 -6.54 15 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 15 11 H -0.27 -6.31 6.30 56.52 0.36 -5.95 15 12 C 0.04 0.74 4.76 -104.62 -0.50 0.24 15 13 C -0.10 -1.83 8.60 -39.58 -0.34 -2.18 15 14 C -0.08 -1.09 10.05 -39.58 -0.40 -1.48 15 15 C -0.14 -1.79 10.05 -39.58 -0.40 -2.19 15 16 C -0.07 -1.04 9.69 -39.58 -0.38 -1.42 15 17 C -0.05 -1.03 6.44 -79.95 -0.52 -1.54 15 18 N 0.03 0.67 4.12 33.96 0.14 0.81 15 19 O -0.14 -3.17 16.36 -29.46 -0.48 -3.65 15 20 O -0.18 -3.72 19.00 -29.46 -0.56 -4.28 15 21 H 0.03 0.56 8.14 -51.93 -0.42 0.14 15 22 H 0.05 0.96 8.00 -51.93 -0.42 0.55 15 23 H 0.06 1.28 6.00 -51.93 -0.31 0.97 15 24 H 0.27 7.87 8.73 -40.82 -0.36 7.51 15 25 H 0.15 2.58 7.85 -52.48 -0.41 2.16 15 26 H 0.13 1.32 8.06 -52.48 -0.42 0.90 15 27 H 0.14 1.21 8.06 -52.49 -0.42 0.79 15 28 H 0.14 1.78 8.04 -52.49 -0.42 1.36 15 LS Contribution 248.07 15.07 3.74 3.74 Total: -1.00 -30.01 248.07 -6.31 -36.32 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: -2.62 Total: -2.21 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: -2.74 Total: -26.33 kcal Atomic # 7 Polarization: -25.34 SS G_CDS: 0.90 Total: -24.44 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: -1.04 Total: -7.93 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -4.55 Total: 20.85 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -30.01 -6.31 -36.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083966522.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.101 kcal (2) G-P(sol) polarization free energy of solvation -30.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds