Wall clock time and date at job start Mon Mar 30 2020 02:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47037 * 2 1 4 4 C 1.50693 * 109.47459 * 120.00527 * 2 1 3 5 5 H 1.07997 * 120.00357 * 119.99421 * 4 2 1 6 6 C 1.37878 * 120.00027 * 300.00188 * 4 2 1 7 7 N 1.31519 * 119.99962 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00274 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46999 * 59.99903 * 8 6 4 10 10 H 1.48499 * 109.47405 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47246 * 300.00243 * 8 6 4 12 12 C 1.50697 * 109.46969 * 240.00968 * 2 1 3 13 13 C 1.38265 * 119.99888 * 299.99673 * 12 2 1 14 14 C 1.38208 * 120.00352 * 179.70542 * 13 12 2 15 15 C 1.38257 * 119.99910 * 359.97438 * 14 13 12 16 16 C 1.38215 * 120.00125 * 0.02562 * 15 14 13 17 17 N 1.48024 * 120.00214 * 179.97438 * 16 15 14 18 18 O 1.21799 * 119.99792 * 0.02562 * 17 16 15 19 19 O 1.21803 * 119.99647 * 180.02562 * 17 16 15 20 20 C 1.38215 * 120.00726 * 119.72629 * 12 2 1 21 21 H 1.09001 * 109.47339 * 59.99383 * 1 2 3 22 22 H 1.08996 * 109.47277 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.46996 * 299.99540 * 1 2 3 24 24 H 0.97000 * 119.99950 * 180.02562 * 7 6 4 25 25 H 1.08000 * 119.99335 * 359.72717 * 13 12 2 26 26 H 1.07992 * 120.00457 * 180.02562 * 14 13 12 27 27 H 1.08000 * 120.00097 * 180.02562 * 15 14 13 28 28 H 1.08001 * 119.99268 * 0.24980 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4826 7 7 0.9436 0.8300 2.6035 8 14 2.3214 -1.1206 4.0078 9 1 3.8064 -1.1211 4.0079 10 1 1.8260 -0.4210 5.2203 11 1 1.8260 -2.5206 4.0074 12 6 2.0323 -0.7102 -1.2306 13 6 1.6983 -2.0339 -1.4495 14 6 2.1538 -2.6836 -2.5811 15 6 2.9432 -2.0096 -3.4945 16 6 3.2771 -0.6864 -3.2757 17 7 4.1227 0.0350 -4.2534 18 8 4.5237 -0.5374 -5.2508 19 8 4.4173 1.2010 -4.0602 20 6 2.8222 -0.0368 -2.1432 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 0.7095 1.1615 3.4845 25 1 1.0811 -2.5601 -0.7364 26 1 1.8926 -3.7173 -2.7524 27 1 3.2988 -2.5171 -4.3790 28 1 3.0828 0.9972 -1.9723 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083966528.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:27 Heat of formation + Delta-G solvation = -6.928807 kcal Electronic energy + Delta-G solvation = -14420.040439 eV Core-core repulsion = 11824.272117 eV Total energy + Delta-G solvation = -2595.768321 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -43.24861 -40.51455 -37.68262 -36.45355 -33.62272 -32.70073 -30.39191 -27.51500 -27.25619 -24.44940 -23.54315 -21.96714 -19.80746 -19.61944 -18.63469 -18.21654 -17.42562 -16.68597 -16.30028 -15.39303 -14.81821 -14.47946 -14.12450 -13.49184 -13.12797 -13.07399 -12.80848 -12.79443 -12.66167 -12.35637 -12.31423 -12.24448 -12.06384 -11.48493 -11.14232 -10.51271 -10.41189 -9.88500 -8.14495 -6.29657 -1.14542 0.16565 0.41160 0.43207 1.43130 1.44670 1.51450 2.37956 2.52434 3.14820 3.54214 3.62433 4.05425 4.12965 4.14992 4.34619 4.76357 4.77593 4.87709 5.05984 5.12008 5.15022 5.25243 5.33431 5.57526 5.67812 5.85416 6.00760 6.23701 6.54224 6.78477 7.39616 8.90098 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.039174 B = 0.007168 C = 0.006950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.589302 B = 3905.053597 C = 4027.736681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.070 3.930 3 H 0.005 0.995 4 C -0.527 4.527 5 H 0.060 0.940 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.954 3.046 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.264 1.264 12 C -0.051 4.051 13 C -0.058 4.058 14 C -0.100 4.100 15 C -0.068 4.068 16 C -0.060 4.060 17 N 0.034 4.966 18 O -0.151 6.151 19 O -0.215 6.215 20 C -0.081 4.081 21 H 0.024 0.976 22 H 0.045 0.955 23 H 0.061 0.939 24 H 0.263 0.737 25 H 0.150 0.850 26 H 0.189 0.811 27 H 0.174 0.826 28 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.391 -8.161 -8.308 11.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.051 3.949 3 H 0.024 0.976 4 C -0.565 4.565 5 H 0.078 0.922 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.780 3.220 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.189 1.189 12 C -0.052 4.052 13 C -0.076 4.076 14 C -0.118 4.118 15 C -0.087 4.087 16 C -0.143 4.143 17 N 0.549 4.451 18 O -0.373 6.373 19 O -0.419 6.419 20 C -0.100 4.100 21 H 0.044 0.956 22 H 0.064 0.936 23 H 0.080 0.920 24 H 0.072 0.928 25 H 0.168 0.832 26 H 0.206 0.794 27 H 0.192 0.808 28 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.088 -8.294 -7.672 11.299 hybrid contribution 0.598 0.559 0.804 1.148 sum 0.510 -7.735 -6.868 10.356 Atomic orbital electron populations 1.21665 0.96404 1.00142 1.00025 1.17812 0.93829 0.94164 0.89080 0.97641 1.21306 1.31711 1.12782 0.90656 0.92213 1.25692 0.95055 0.95568 1.01833 1.69998 1.37204 1.23839 1.24306 0.85661 0.78525 0.79115 0.78687 1.20231 1.21283 1.18887 1.20486 0.94365 0.95344 0.94985 1.21804 0.95912 0.93130 0.96775 1.21622 0.96064 1.02129 0.92014 1.21312 0.95992 0.89916 1.01443 1.21257 1.04382 0.95372 0.93260 1.43923 0.99244 1.00825 1.01147 1.94426 1.55520 1.69165 1.18209 1.94541 1.63112 1.01480 1.82777 1.20944 0.96305 1.01170 0.91586 0.95650 0.93618 0.91995 0.92785 0.83230 0.79419 0.80841 0.85206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.46 8.78 71.98 0.63 -4.83 15 2 C 0.07 3.23 2.48 -12.29 -0.03 3.20 15 3 H 0.01 0.28 7.88 -2.38 -0.02 0.27 15 4 C -0.53 -26.43 8.24 25.60 0.21 -26.22 15 5 H 0.06 2.91 7.60 -2.91 -0.02 2.88 15 6 C 0.02 0.93 5.30 84.65 0.45 1.38 15 7 N -0.91 -49.95 11.32 21.45 0.24 -49.71 15 8 Si 0.95 40.88 29.54 68.60 2.03 42.91 15 9 H -0.28 -11.80 7.11 99.48 0.71 -11.09 15 10 H -0.29 -12.28 7.11 99.48 0.71 -11.57 15 11 H -0.26 -10.74 7.11 99.48 0.71 -10.03 15 12 C -0.05 -1.93 4.74 -19.86 -0.09 -2.02 15 13 C -0.06 -1.74 8.71 22.27 0.19 -1.55 15 14 C -0.10 -2.22 10.05 22.27 0.22 -2.00 15 15 C -0.07 -1.68 9.56 22.27 0.21 -1.47 15 16 C -0.06 -1.95 6.85 36.37 0.25 -1.71 15 17 N 0.03 1.21 4.45 -46.46 -0.21 1.00 15 18 O -0.15 -4.98 18.45 18.89 0.35 -4.63 15 19 O -0.22 -8.31 18.45 18.88 0.35 -7.97 15 20 C -0.08 -2.99 9.18 22.27 0.20 -2.78 15 21 H 0.02 0.99 8.14 -2.39 -0.02 0.97 15 22 H 0.04 1.81 7.39 -2.39 -0.02 1.79 15 23 H 0.06 3.08 6.07 -2.39 -0.01 3.07 15 24 H 0.26 13.78 8.31 -92.71 -0.77 13.01 15 25 H 0.15 4.27 7.58 -2.91 -0.02 4.25 15 26 H 0.19 2.39 8.06 -2.91 -0.02 2.37 15 27 H 0.17 3.27 7.61 -2.91 -0.02 3.25 15 28 H 0.13 5.08 7.50 -2.91 -0.02 5.06 15 Total: -1.00 -58.35 253.56 6.18 -52.17 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: 1.17 Total: 4.21 kcal Atomic # 6 Polarization: -40.24 SS G_CDS: 2.25 Total: -37.99 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 0.04 Total: -48.71 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.70 Total: -12.59 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -58.35 6.18 -52.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083966528.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.246 kcal (2) G-P(sol) polarization free energy of solvation -58.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds