Wall clock time and date at job start Mon Mar 30 2020 02:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47430 * 240.00158 * 2 1 3 5 5 H 1.07999 * 120.00193 * 240.00552 * 4 2 1 6 6 C 1.37879 * 119.99398 * 59.99633 * 4 2 1 7 7 N 1.31514 * 119.99350 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 C 1.50699 * 109.47592 * 120.00047 * 2 1 3 13 13 C 1.38262 * 119.99609 * 59.72688 * 12 2 1 14 14 C 1.38222 * 119.99648 * 179.77129 * 13 12 2 15 15 C 1.38248 * 120.00004 * 0.50272 * 14 13 12 16 16 C 1.38217 * 120.00355 * 359.74840 * 15 14 13 17 17 N 1.48014 * 120.00422 * 179.97438 * 16 15 14 18 18 O 1.21792 * 120.00177 * 180.02562 * 17 16 15 19 19 O 1.21804 * 119.99931 * 0.02562 * 17 16 15 20 20 C 1.38210 * 120.00299 * 240.00163 * 12 2 1 21 21 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 23 23 H 1.09001 * 109.46922 * 59.99700 * 1 2 3 24 24 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 25 25 H 1.07997 * 119.99897 * 359.97438 * 13 12 2 26 26 H 1.08007 * 119.99403 * 180.23133 * 14 13 12 27 27 H 1.08000 * 119.99956 * 179.72566 * 15 14 13 28 28 H 1.07993 * 119.99914 * 0.02562 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 2.1373 -0.8595 -3.5565 8 14 0.6258 1.2799 -2.6541 9 1 -0.8021 0.8745 -2.6992 10 1 0.8491 2.1773 -1.4922 11 1 0.9771 1.9954 -3.9070 12 6 2.0324 -0.7104 1.2304 13 6 1.6938 -2.0325 1.4520 14 6 2.1585 -2.6854 2.5781 15 6 2.9533 -2.0136 3.4881 16 6 3.2876 -0.6904 3.2693 17 7 4.1381 0.0291 4.2438 18 8 4.4323 1.1951 4.0512 19 8 4.5439 -0.5450 5.2385 20 6 2.8270 -0.0387 2.1402 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.9026 -0.5282 -4.4376 25 1 1.0689 -2.5558 0.7435 26 1 1.8970 -3.7193 2.7493 27 1 3.3128 -2.5225 4.3703 28 1 3.0875 0.9953 1.9695 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083966530.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:34 Heat of formation + Delta-G solvation = 14.489809 kcal Electronic energy + Delta-G solvation = -14468.612573 eV Core-core repulsion = 11873.773032 eV Total energy + Delta-G solvation = -2594.839540 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 2.78 seconds Orbital eigenvalues (eV) -41.91095 -39.28844 -36.32615 -34.94827 -32.05398 -31.50995 -29.49713 -26.22823 -25.29998 -23.14141 -22.32991 -20.47698 -18.46060 -18.13445 -17.28441 -16.85333 -16.19255 -15.08817 -14.99687 -14.19184 -13.38266 -13.07264 -12.87387 -12.37869 -12.07342 -11.83132 -11.37715 -11.33646 -11.14029 -10.93714 -10.92916 -10.49310 -10.21810 -9.64912 -9.44322 -9.22550 -8.79473 -8.56783 -6.27728 -4.30804 0.16227 1.33604 1.69565 1.72266 3.13088 3.24522 3.27414 3.69332 4.22432 4.68912 4.78692 5.03883 5.18606 5.30684 5.36881 5.50860 5.88108 5.97372 6.10728 6.22456 6.33596 6.36082 6.53713 6.57578 6.75385 6.90639 7.18237 7.45508 7.90605 8.24941 8.72642 9.31467 10.84465 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.040178 B = 0.007686 C = 0.007168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.729324 B = 3642.273011 C = 3905.240860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.038 3.962 3 H 0.043 0.957 4 C -0.520 4.520 5 H 0.077 0.923 6 C 0.075 3.925 7 N -0.892 5.892 8 Si 0.888 3.112 9 H -0.277 1.277 10 H -0.265 1.265 11 H -0.295 1.295 12 C -0.024 4.024 13 C -0.054 4.054 14 C -0.122 4.122 15 C -0.079 4.079 16 C -0.048 4.048 17 N 0.035 4.965 18 O -0.169 6.169 19 O -0.177 6.177 20 C -0.066 4.066 21 H 0.056 0.944 22 H 0.033 0.967 23 H 0.047 0.953 24 H 0.267 0.733 25 H 0.146 0.854 26 H 0.140 0.860 27 H 0.144 0.856 28 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.468 -1.484 10.340 10.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.019 3.981 3 H 0.061 0.939 4 C -0.558 4.558 5 H 0.095 0.905 6 C -0.128 4.128 7 N -0.529 5.529 8 Si 0.718 3.282 9 H -0.204 1.204 10 H -0.190 1.190 11 H -0.222 1.222 12 C -0.025 4.025 13 C -0.072 4.072 14 C -0.141 4.141 15 C -0.098 4.098 16 C -0.131 4.131 17 N 0.551 4.449 18 O -0.384 6.384 19 O -0.391 6.391 20 C -0.085 4.085 21 H 0.075 0.925 22 H 0.052 0.948 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.163 0.837 26 H 0.158 0.842 27 H 0.161 0.839 28 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.854 -1.836 9.683 10.260 hybrid contribution -0.268 0.929 -0.043 0.968 sum -3.122 -0.906 9.639 10.173 Atomic orbital electron populations 1.22198 0.97722 1.01234 0.99242 1.18424 0.92408 0.96536 0.90710 0.93927 1.20845 1.33114 1.13970 0.87856 0.90460 1.24975 0.95507 0.96615 0.95672 1.69872 1.44780 1.40116 0.98099 0.86841 0.80507 0.83566 0.77321 1.20378 1.19005 1.22202 1.20339 0.93315 0.93959 0.94882 1.21658 0.96037 0.94150 0.95350 1.21182 0.98191 1.00500 0.94231 1.20858 0.97070 0.91375 1.00533 1.21089 1.03765 0.94406 0.93847 1.43729 0.99283 1.00870 1.00977 1.94517 1.61407 1.00693 1.81829 1.94477 1.56531 1.69436 1.18624 1.21067 0.95301 1.01504 0.90605 0.92489 0.94826 0.93472 0.92268 0.83673 0.84202 0.83869 0.83511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.48 37.16 0.32 -2.49 15 2 C 0.04 0.80 2.07 -92.92 -0.19 0.61 15 3 H 0.04 0.92 6.93 -51.93 -0.36 0.56 15 4 C -0.52 -13.24 8.83 -34.44 -0.30 -13.54 15 5 H 0.08 2.14 7.85 -52.49 -0.41 1.73 15 6 C 0.08 2.02 5.45 -17.82 -0.10 1.92 15 7 N -0.89 -25.64 13.96 55.43 0.77 -24.86 15 8 Si 0.89 20.39 24.37 -169.99 -4.14 16.25 15 9 H -0.28 -6.16 6.87 56.52 0.39 -5.77 15 10 H -0.27 -5.81 6.53 56.52 0.37 -5.44 15 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15 12 C -0.02 -0.44 4.73 -104.62 -0.50 -0.93 15 13 C -0.05 -0.85 8.72 -39.58 -0.35 -1.20 15 14 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 15 15 C -0.08 -1.11 9.56 -39.59 -0.38 -1.49 15 16 C -0.05 -0.80 6.85 -79.95 -0.55 -1.34 15 17 N 0.03 0.61 4.45 33.96 0.15 0.76 15 18 O -0.17 -3.09 18.45 -29.46 -0.54 -3.63 15 19 O -0.18 -3.06 18.45 -29.46 -0.54 -3.60 15 20 C -0.07 -1.14 9.18 -39.58 -0.36 -1.50 15 21 H 0.06 1.02 7.37 -51.93 -0.38 0.63 15 22 H 0.03 0.55 8.14 -51.93 -0.42 0.13 15 23 H 0.05 0.96 3.27 -51.93 -0.17 0.79 15 24 H 0.27 7.23 8.31 -40.82 -0.34 6.89 15 25 H 0.15 2.22 7.56 -52.49 -0.40 1.83 15 26 H 0.14 1.35 8.06 -52.48 -0.42 0.93 15 27 H 0.14 1.71 7.61 -52.49 -0.40 1.31 15 28 H 0.15 2.48 7.50 -52.49 -0.39 2.09 15 LS Contribution 246.72 15.07 3.72 3.72 Total: -1.00 -28.22 246.72 -5.93 -34.16 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -2.54 Total: -0.82 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: -2.81 Total: -21.97 kcal Atomic # 7 Polarization: -25.03 SS G_CDS: 0.92 Total: -24.10 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -1.09 Total: -7.24 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.14 Total: 16.25 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -28.22 -5.93 -34.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083966530.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.649 kcal (2) G-P(sol) polarization free energy of solvation -28.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.78 seconds