Wall clock time and date at job start Mon Mar 30 2020 02:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47430 * 240.00158 * 2 1 3 5 5 H 1.07999 * 120.00193 * 240.00552 * 4 2 1 6 6 C 1.37879 * 119.99398 * 59.99633 * 4 2 1 7 7 N 1.31514 * 119.99350 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 C 1.50699 * 109.47592 * 120.00047 * 2 1 3 13 13 C 1.38262 * 119.99609 * 59.72688 * 12 2 1 14 14 C 1.38222 * 119.99648 * 179.77129 * 13 12 2 15 15 C 1.38248 * 120.00004 * 0.50272 * 14 13 12 16 16 C 1.38217 * 120.00355 * 359.74840 * 15 14 13 17 17 N 1.48014 * 120.00422 * 179.97438 * 16 15 14 18 18 O 1.21792 * 120.00177 * 180.02562 * 17 16 15 19 19 O 1.21804 * 119.99931 * 0.02562 * 17 16 15 20 20 C 1.38210 * 120.00299 * 240.00163 * 12 2 1 21 21 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 23 23 H 1.09001 * 109.46922 * 59.99700 * 1 2 3 24 24 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 25 25 H 1.07997 * 119.99897 * 359.97438 * 13 12 2 26 26 H 1.08007 * 119.99403 * 180.23133 * 14 13 12 27 27 H 1.08000 * 119.99956 * 179.72566 * 15 14 13 28 28 H 1.07993 * 119.99914 * 0.02562 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 2.1373 -0.8595 -3.5565 8 14 0.6258 1.2799 -2.6541 9 1 -0.8021 0.8745 -2.6992 10 1 0.8491 2.1773 -1.4922 11 1 0.9771 1.9954 -3.9070 12 6 2.0324 -0.7104 1.2304 13 6 1.6938 -2.0325 1.4520 14 6 2.1585 -2.6854 2.5781 15 6 2.9533 -2.0136 3.4881 16 6 3.2876 -0.6904 3.2693 17 7 4.1381 0.0291 4.2438 18 8 4.4323 1.1951 4.0512 19 8 4.5439 -0.5450 5.2385 20 6 2.8270 -0.0387 2.1402 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.9026 -0.5282 -4.4376 25 1 1.0689 -2.5558 0.7435 26 1 1.8970 -3.7193 2.7493 27 1 3.3128 -2.5225 4.3703 28 1 3.0875 0.9953 1.9695 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083966530.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:34 Heat of formation + Delta-G solvation = -1.325090 kcal Electronic energy + Delta-G solvation = -14469.298358 eV Core-core repulsion = 11873.773032 eV Total energy + Delta-G solvation = -2595.525326 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = -0.05 seconds Orbital eigenvalues (eV) -43.25177 -40.58074 -37.68541 -36.55917 -33.91721 -32.74989 -30.93397 -27.53958 -27.13485 -24.61853 -23.58314 -21.94939 -19.82458 -19.57728 -18.69079 -18.62255 -17.44516 -16.84515 -16.36595 -15.48634 -14.93320 -14.67249 -14.31780 -13.99834 -13.48482 -13.16934 -12.95973 -12.81834 -12.68869 -12.34069 -12.31134 -12.09052 -11.87342 -11.34935 -11.27533 -10.78209 -10.43645 -9.94334 -8.32911 -6.38524 -1.15700 0.12507 0.39283 0.41948 1.30740 1.38131 1.46579 2.30015 2.44734 3.03387 3.46950 3.59857 3.99920 4.07975 4.10025 4.22347 4.53900 4.62107 4.73302 4.82153 4.95083 5.05989 5.09583 5.20263 5.33287 5.54694 5.64717 5.67306 6.22124 6.53515 6.67516 7.27164 8.82816 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.040178 B = 0.007686 C = 0.007168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.729324 B = 3642.273011 C = 3905.240860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.037 3.963 3 H 0.034 0.966 4 C -0.513 4.513 5 H 0.042 0.958 6 C 0.019 3.981 7 N -0.944 5.944 8 Si 0.944 3.056 9 H -0.262 1.262 10 H -0.249 1.249 11 H -0.303 1.303 12 C -0.048 4.048 13 C -0.057 4.057 14 C -0.102 4.102 15 C -0.065 4.065 16 C -0.061 4.061 17 N 0.035 4.965 18 O -0.207 6.207 19 O -0.157 6.157 20 C -0.076 4.076 21 H 0.066 0.934 22 H 0.061 0.939 23 H 0.035 0.965 24 H 0.267 0.733 25 H 0.148 0.852 26 H 0.186 0.814 27 H 0.173 0.827 28 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.593 -2.262 12.320 13.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.018 3.982 3 H 0.052 0.948 4 C -0.551 4.551 5 H 0.060 0.940 6 C -0.179 4.179 7 N -0.583 5.583 8 Si 0.772 3.228 9 H -0.187 1.187 10 H -0.173 1.173 11 H -0.232 1.232 12 C -0.049 4.049 13 C -0.075 4.075 14 C -0.120 4.120 15 C -0.084 4.084 16 C -0.144 4.144 17 N 0.549 4.451 18 O -0.413 6.413 19 O -0.377 6.377 20 C -0.095 4.095 21 H 0.085 0.915 22 H 0.080 0.920 23 H 0.054 0.946 24 H 0.076 0.924 25 H 0.165 0.835 26 H 0.203 0.797 27 H 0.191 0.809 28 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.985 -2.537 11.655 12.576 hybrid contribution 0.152 0.999 -0.546 1.148 sum -3.833 -1.538 11.110 11.852 Atomic orbital electron populations 1.22118 0.95825 1.02210 0.99980 1.18301 0.93982 0.95748 0.90164 0.94767 1.21105 1.31489 1.12724 0.89761 0.93979 1.25776 0.97096 0.99604 0.95422 1.70018 1.47269 1.42360 0.98696 0.85915 0.79472 0.80212 0.77228 1.18731 1.17287 1.23161 1.20095 0.95132 0.95173 0.94455 1.21816 0.96002 0.93243 0.96442 1.21602 0.96166 1.02087 0.92187 1.21311 0.95691 0.90086 1.01293 1.21235 1.04227 0.95345 0.93560 1.43892 0.99280 1.00817 1.01105 1.94531 1.62948 1.01370 1.82461 1.94445 1.55706 1.69120 1.18473 1.20968 0.95724 1.01506 0.91280 0.91521 0.91995 0.94620 0.92413 0.83453 0.79681 0.80931 0.84216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.21 8.48 71.98 0.61 -4.60 15 2 C 0.04 1.53 2.07 -12.29 -0.03 1.50 15 3 H 0.03 1.46 6.93 -2.39 -0.02 1.45 15 4 C -0.51 -26.51 8.83 25.60 0.23 -26.29 15 5 H 0.04 2.41 7.85 -2.91 -0.02 2.39 15 6 C 0.02 1.03 5.45 84.66 0.46 1.49 15 7 N -0.94 -55.88 13.96 21.45 0.30 -55.58 15 8 Si 0.94 42.02 24.37 68.60 1.67 43.69 15 9 H -0.26 -10.90 6.87 99.48 0.68 -10.22 15 10 H -0.25 -10.29 6.53 99.48 0.65 -9.64 15 11 H -0.30 -13.82 7.11 99.48 0.71 -13.12 15 12 C -0.05 -1.68 4.73 -19.87 -0.09 -1.77 15 13 C -0.06 -1.66 8.72 22.27 0.19 -1.47 15 14 C -0.10 -2.24 10.05 22.27 0.22 -2.02 15 15 C -0.06 -1.56 9.56 22.27 0.21 -1.35 15 16 C -0.06 -1.88 6.85 36.38 0.25 -1.63 15 17 N 0.03 1.16 4.45 -46.46 -0.21 0.95 15 18 O -0.21 -7.54 18.45 18.90 0.35 -7.19 15 19 O -0.16 -5.03 18.45 18.88 0.35 -4.68 15 20 C -0.08 -2.57 9.18 22.27 0.20 -2.36 15 21 H 0.07 2.24 7.37 -2.39 -0.02 2.22 15 22 H 0.06 1.87 8.14 -2.39 -0.02 1.85 15 23 H 0.04 1.36 3.27 -2.39 -0.01 1.35 15 24 H 0.27 14.90 8.31 -92.70 -0.77 14.13 15 25 H 0.15 4.21 7.56 -2.91 -0.02 4.19 15 26 H 0.19 2.43 8.06 -2.91 -0.02 2.41 15 27 H 0.17 3.19 7.61 -2.91 -0.02 3.16 15 28 H 0.14 4.81 7.50 -2.91 -0.02 4.79 15 Total: -1.00 -62.16 246.72 5.82 -56.34 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: 1.10 Total: 4.97 kcal Atomic # 6 Polarization: -40.75 SS G_CDS: 2.26 Total: -38.49 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.09 Total: -54.63 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.70 Total: -11.88 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.67 Total: 43.69 kcal Total: -62.16 5.82 -56.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083966530.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.010 kcal (2) G-P(sol) polarization free energy of solvation -62.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.05 seconds