Wall clock time and date at job start Mon Mar 30 2020 02:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47129 * 2 1 4 4 C 1.50703 * 109.46881 * 119.99771 * 2 1 3 5 5 H 1.08000 * 120.00042 * 120.00052 * 4 2 1 6 6 C 1.37877 * 119.99885 * 300.00016 * 4 2 1 7 7 N 1.31510 * 120.00181 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99782 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47450 * 90.00251 * 8 6 4 10 10 H 1.48499 * 109.47054 * 210.00256 * 8 6 4 11 11 H 1.48504 * 109.47010 * 330.00023 * 8 6 4 12 12 C 1.50703 * 109.47431 * 239.99827 * 2 1 3 13 13 C 1.38235 * 119.99838 * 119.99952 * 12 2 1 14 14 C 1.38234 * 119.99692 * 180.02562 * 13 12 2 15 15 C 1.38241 * 120.00104 * 0.02562 * 14 13 12 16 16 N 1.48020 * 120.00001 * 179.97438 * 15 14 13 17 17 O 1.21803 * 119.99894 * 359.97438 * 16 15 14 18 18 O 1.21799 * 119.99903 * 179.72763 * 16 15 14 19 19 C 1.38239 * 119.99659 * 0.25361 * 15 14 13 20 20 C 1.38231 * 120.00010 * 359.49273 * 19 15 14 21 21 H 1.08999 * 109.46878 * 60.00496 * 1 2 3 22 22 H 1.09001 * 109.47129 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47465 * 300.00108 * 1 2 3 24 24 H 0.97001 * 120.00377 * 180.02562 * 7 6 4 25 25 H 1.07998 * 119.99910 * 0.02562 * 13 12 2 26 26 H 1.08002 * 120.00159 * 179.97438 * 14 13 12 27 27 H 1.07999 * 119.99627 * 179.73007 * 19 15 14 28 28 H 1.08002 * 119.99557 * 180.23223 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3224 -1.1194 4.0081 9 1 3.6303 -0.5439 4.4121 10 1 1.3443 -0.9489 5.1123 11 1 2.4879 -2.5653 3.7123 12 6 2.0324 -0.7104 -1.2304 13 6 2.8272 -0.0386 -2.1403 14 6 3.2876 -0.6901 -3.2692 15 6 2.9528 -2.0134 -3.4885 16 7 3.4453 -2.7108 -4.6976 17 8 4.1452 -2.1187 -5.4996 18 8 3.1544 -3.8781 -4.8883 19 6 2.1532 -2.6834 -2.5814 20 6 1.6972 -2.0334 -1.4499 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 0.7086 1.1614 3.4843 25 1 3.0883 0.9952 -1.9692 26 1 3.9082 -0.1652 -3.9804 27 1 1.8881 -3.7159 -2.7549 28 1 1.0756 -2.5581 -0.7394 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083966533.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:45 Heat of formation + Delta-G solvation = 4.420251 kcal Electronic energy + Delta-G solvation = -14327.181052 eV Core-core repulsion = 11731.904862 eV Total energy + Delta-G solvation = -2595.276189 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 3.77 seconds Orbital eigenvalues (eV) -41.86517 -39.17933 -36.28955 -34.81641 -32.01213 -31.00315 -29.41699 -25.86577 -25.33275 -22.86074 -22.32188 -20.16057 -18.97631 -18.39102 -17.25067 -16.53919 -15.53223 -14.85718 -14.57207 -14.15876 -13.49687 -13.08044 -12.62949 -12.29374 -11.66182 -11.35499 -11.20249 -11.09062 -11.04420 -10.92050 -10.91513 -10.54569 -10.35876 -9.84855 -9.40129 -8.99313 -8.63705 -8.57375 -6.25332 -4.34803 0.24154 1.39091 1.76461 1.80317 3.16324 3.24204 3.26629 3.78738 4.24420 4.78128 4.83814 5.06132 5.31263 5.34592 5.54007 5.67052 5.98067 6.14706 6.39918 6.50306 6.57934 6.68804 6.77943 6.90388 7.02888 7.41660 7.61332 7.80193 7.94467 8.05802 8.67127 9.32056 10.80176 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.047571 B = 0.006591 C = 0.006299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.451170 B = 4247.092142 C = 4444.089948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.063 3.937 3 H 0.044 0.956 4 C -0.519 4.519 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.897 3.103 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.026 3.974 13 C -0.132 4.132 14 C -0.056 4.056 15 C -0.076 4.076 16 N 0.040 4.960 17 O -0.181 6.181 18 O -0.180 6.180 19 C -0.058 4.058 20 C -0.112 4.112 21 H 0.012 0.988 22 H 0.032 0.968 23 H 0.091 0.909 24 H 0.264 0.736 25 H 0.141 0.859 26 H 0.143 0.857 27 H 0.143 0.857 28 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.976 -2.264 -6.600 7.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.045 3.955 3 H 0.062 0.938 4 C -0.557 4.557 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.724 3.276 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.197 1.197 12 C 0.026 3.974 13 C -0.151 4.151 14 C -0.075 4.075 15 C -0.160 4.160 16 N 0.554 4.446 17 O -0.394 6.394 18 O -0.393 6.393 19 C -0.078 4.078 20 C -0.131 4.131 21 H 0.031 0.969 22 H 0.051 0.949 23 H 0.110 0.890 24 H 0.074 0.926 25 H 0.159 0.841 26 H 0.161 0.839 27 H 0.161 0.839 28 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.657 -1.823 -5.907 6.217 hybrid contribution 0.507 -0.620 0.537 0.965 sum 1.164 -2.443 -5.370 6.013 Atomic orbital electron populations 1.21823 0.96695 0.99783 1.00921 1.18120 0.93493 0.95931 0.87962 0.93812 1.21000 1.32263 1.12918 0.89480 0.92205 1.24943 0.94667 0.94889 0.99099 1.69859 1.35884 1.22579 1.23957 0.86508 0.78717 0.80095 0.82261 1.20491 1.21008 1.19735 1.21315 0.88090 0.93412 0.94601 1.21253 0.99450 1.01163 0.93219 1.20957 0.97291 0.91306 0.97926 1.20962 1.10051 0.94962 0.90010 1.43717 0.98256 1.00693 1.01919 1.94481 1.35207 1.68129 1.41592 1.94485 1.62123 1.00798 1.81904 1.21028 0.93655 1.00734 0.92353 1.21212 1.00928 0.95015 0.95938 0.96908 0.94886 0.89022 0.92562 0.84072 0.83919 0.83898 0.83497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.78 37.16 0.33 -2.52 15 2 C 0.06 1.38 2.48 -92.92 -0.23 1.15 15 3 H 0.04 1.02 7.88 -51.93 -0.41 0.61 15 4 C -0.52 -12.69 8.24 -34.44 -0.28 -12.97 15 5 H 0.06 1.46 7.60 -52.49 -0.40 1.06 15 6 C 0.07 1.68 5.30 -17.82 -0.09 1.58 15 7 N -0.89 -23.09 11.32 55.43 0.63 -22.46 15 8 Si 0.90 19.74 29.54 -169.99 -5.02 14.72 15 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 11 H -0.27 -5.95 7.11 56.52 0.40 -5.55 15 12 C 0.03 0.48 4.74 -104.62 -0.50 -0.01 15 13 C -0.13 -2.14 9.67 -39.58 -0.38 -2.52 15 14 C -0.06 -0.85 9.56 -39.58 -0.38 -1.23 15 15 C -0.08 -1.26 6.85 -79.94 -0.55 -1.81 15 16 N 0.04 0.69 4.45 33.96 0.15 0.84 15 17 O -0.18 -3.18 18.45 -29.46 -0.54 -3.72 15 18 O -0.18 -3.18 18.45 -29.46 -0.54 -3.72 15 19 C -0.06 -0.92 9.56 -39.58 -0.38 -1.30 15 20 C -0.11 -1.91 8.71 -39.59 -0.34 -2.26 15 21 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 15 22 H 0.03 0.66 7.38 -51.93 -0.38 0.27 15 23 H 0.09 2.18 6.07 -51.93 -0.32 1.86 15 24 H 0.26 6.62 8.31 -40.82 -0.34 6.28 15 25 H 0.14 2.04 7.95 -52.49 -0.42 1.62 15 26 H 0.14 1.90 7.61 -52.49 -0.40 1.50 15 27 H 0.14 1.98 7.61 -52.49 -0.40 1.59 15 28 H 0.15 2.43 7.57 -52.49 -0.40 2.04 15 LS Contribution 253.55 15.07 3.82 3.82 Total: -1.00 -25.96 253.55 -7.00 -32.95 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -2.68 Total: -0.53 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: -2.81 Total: -21.90 kcal Atomic # 7 Polarization: -22.40 SS G_CDS: 0.78 Total: -21.62 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -1.09 Total: -7.45 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -25.96 -7.00 -32.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083966533.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.375 kcal (2) G-P(sol) polarization free energy of solvation -25.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.77 seconds