Wall clock time and date at job start Mon Mar 30 2020 02:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47129 * 2 1 4 4 C 1.50703 * 109.46881 * 119.99771 * 2 1 3 5 5 H 1.08000 * 120.00042 * 120.00052 * 4 2 1 6 6 C 1.37877 * 119.99885 * 300.00016 * 4 2 1 7 7 N 1.31510 * 120.00181 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99782 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47450 * 90.00251 * 8 6 4 10 10 H 1.48499 * 109.47054 * 210.00256 * 8 6 4 11 11 H 1.48504 * 109.47010 * 330.00023 * 8 6 4 12 12 C 1.50703 * 109.47431 * 239.99827 * 2 1 3 13 13 C 1.38235 * 119.99838 * 119.99952 * 12 2 1 14 14 C 1.38234 * 119.99692 * 180.02562 * 13 12 2 15 15 C 1.38241 * 120.00104 * 0.02562 * 14 13 12 16 16 N 1.48020 * 120.00001 * 179.97438 * 15 14 13 17 17 O 1.21803 * 119.99894 * 359.97438 * 16 15 14 18 18 O 1.21799 * 119.99903 * 179.72763 * 16 15 14 19 19 C 1.38239 * 119.99659 * 0.25361 * 15 14 13 20 20 C 1.38231 * 120.00010 * 359.49273 * 19 15 14 21 21 H 1.08999 * 109.46878 * 60.00496 * 1 2 3 22 22 H 1.09001 * 109.47129 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47465 * 300.00108 * 1 2 3 24 24 H 0.97001 * 120.00377 * 180.02562 * 7 6 4 25 25 H 1.07998 * 119.99910 * 0.02562 * 13 12 2 26 26 H 1.08002 * 120.00159 * 179.97438 * 14 13 12 27 27 H 1.07999 * 119.99627 * 179.73007 * 19 15 14 28 28 H 1.08002 * 119.99557 * 180.23223 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3224 -1.1194 4.0081 9 1 3.6303 -0.5439 4.4121 10 1 1.3443 -0.9489 5.1123 11 1 2.4879 -2.5653 3.7123 12 6 2.0324 -0.7104 -1.2304 13 6 2.8272 -0.0386 -2.1403 14 6 3.2876 -0.6901 -3.2692 15 6 2.9528 -2.0134 -3.4885 16 7 3.4453 -2.7108 -4.6976 17 8 4.1452 -2.1187 -5.4996 18 8 3.1544 -3.8781 -4.8883 19 6 2.1532 -2.6834 -2.5814 20 6 1.6972 -2.0334 -1.4499 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 0.7086 1.1614 3.4843 25 1 3.0883 0.9952 -1.9692 26 1 3.9082 -0.1652 -3.9804 27 1 1.8881 -3.7159 -2.7549 28 1 1.0756 -2.5581 -0.7394 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083966533.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:43 Heat of formation + Delta-G solvation = -7.064699 kcal Electronic energy + Delta-G solvation = -14327.679076 eV Core-core repulsion = 11731.904862 eV Total energy + Delta-G solvation = -2595.774214 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -43.21000 -40.52905 -37.64680 -36.47790 -33.70459 -32.28331 -30.96777 -27.36166 -27.11298 -24.22201 -23.72979 -21.72540 -20.28852 -19.74433 -18.59665 -18.36066 -17.12872 -16.34277 -15.98170 -15.60110 -14.81078 -14.62773 -14.11018 -13.88414 -13.38181 -12.86114 -12.82334 -12.71227 -12.52211 -12.32836 -12.28173 -12.22409 -12.04890 -11.51412 -11.13646 -10.51427 -10.25090 -10.06241 -8.15254 -6.29415 -1.10890 0.12767 0.43197 0.45248 1.41507 1.45155 1.52671 2.37066 2.51402 3.14732 3.53232 3.62528 3.93059 4.05680 4.21920 4.40882 4.70241 4.81425 4.90471 4.95784 5.13001 5.15839 5.24932 5.35310 5.58044 5.65236 5.86721 6.00383 6.24169 6.57491 6.78535 7.39800 8.89141 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.047571 B = 0.006591 C = 0.006299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.451170 B = 4247.092142 C = 4444.089948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.063 3.937 3 H 0.023 0.977 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.022 3.978 7 N -0.912 5.912 8 Si 0.950 3.050 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.268 1.268 12 C 0.007 3.993 13 C -0.129 4.129 14 C -0.046 4.046 15 C -0.083 4.083 16 N 0.039 4.961 17 O -0.182 6.182 18 O -0.188 6.188 19 C -0.050 4.050 20 C -0.115 4.115 21 H 0.030 0.970 22 H 0.038 0.962 23 H 0.063 0.937 24 H 0.263 0.737 25 H 0.157 0.843 26 H 0.167 0.833 27 H 0.163 0.837 28 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.529 -2.898 -7.340 8.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.045 3.955 3 H 0.041 0.959 4 C -0.564 4.564 5 H 0.074 0.926 6 C -0.178 4.178 7 N -0.550 5.550 8 Si 0.776 3.224 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.193 1.193 12 C 0.007 3.993 13 C -0.147 4.147 14 C -0.065 4.065 15 C -0.166 4.166 16 N 0.552 4.448 17 O -0.395 6.395 18 O -0.399 6.399 19 C -0.069 4.069 20 C -0.133 4.133 21 H 0.049 0.951 22 H 0.057 0.943 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.174 0.826 26 H 0.184 0.816 27 H 0.180 0.820 28 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.211 -2.474 -6.656 7.203 hybrid contribution 0.356 -0.418 0.698 0.888 sum 1.567 -2.892 -5.958 6.806 Atomic orbital electron populations 1.21680 0.96497 0.99947 1.00355 1.17951 0.93768 0.94890 0.88886 0.95912 1.21306 1.31698 1.12716 0.90703 0.92556 1.25606 0.95043 0.95554 1.01577 1.69974 1.37029 1.23768 1.24265 0.85670 0.77996 0.79277 0.79427 1.20507 1.21035 1.19257 1.21073 0.89854 0.94153 0.94243 1.21361 0.98647 1.01850 0.92867 1.21155 0.96706 0.90879 0.97718 1.21166 1.10196 0.95452 0.89779 1.43828 0.98192 1.00690 1.02081 1.94477 1.35205 1.68065 1.41770 1.94487 1.62349 1.01004 1.82097 1.21147 0.92832 1.01505 0.91455 1.21183 1.01155 0.94535 0.96461 0.95124 0.94285 0.91826 0.92744 0.82572 0.81571 0.81989 0.83422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.36 8.78 71.98 0.63 -4.73 15 2 C 0.06 2.76 2.48 -12.28 -0.03 2.73 15 3 H 0.02 1.07 7.88 -2.39 -0.02 1.05 15 4 C -0.53 -25.65 8.24 25.60 0.21 -25.44 15 5 H 0.06 2.72 7.60 -2.91 -0.02 2.70 15 6 C 0.02 1.11 5.30 84.66 0.45 1.56 15 7 N -0.91 -48.10 11.32 21.45 0.24 -47.85 15 8 Si 0.95 40.32 29.54 68.60 2.03 42.35 15 9 H -0.28 -11.77 7.11 99.48 0.71 -11.06 15 10 H -0.28 -12.00 7.11 99.48 0.71 -11.29 15 11 H -0.27 -11.07 7.11 99.48 0.71 -10.36 15 12 C 0.01 0.26 4.74 -19.87 -0.09 0.16 15 13 C -0.13 -3.91 9.67 22.27 0.22 -3.69 15 14 C -0.05 -1.27 9.56 22.27 0.21 -1.06 15 15 C -0.08 -2.51 6.85 36.38 0.25 -2.26 15 16 N 0.04 1.25 4.45 -46.46 -0.21 1.04 15 17 O -0.18 -5.92 18.45 18.88 0.35 -5.57 15 18 O -0.19 -6.21 18.45 18.89 0.35 -5.87 15 19 C -0.05 -1.47 9.56 22.27 0.21 -1.26 15 20 C -0.11 -3.72 8.71 22.27 0.19 -3.52 15 21 H 0.03 1.13 8.14 -2.39 -0.02 1.11 15 22 H 0.04 1.54 7.38 -2.39 -0.02 1.52 15 23 H 0.06 3.05 6.07 -2.39 -0.01 3.04 15 24 H 0.26 13.34 8.31 -92.71 -0.77 12.57 15 25 H 0.16 4.20 7.95 -2.91 -0.02 4.18 15 26 H 0.17 3.84 7.61 -2.91 -0.02 3.82 15 27 H 0.16 4.06 7.61 -2.91 -0.02 4.04 15 28 H 0.15 4.71 7.57 -2.91 -0.02 4.69 15 Total: -1.00 -53.59 253.55 6.18 -47.41 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: 1.17 Total: 6.01 kcal Atomic # 6 Polarization: -39.77 SS G_CDS: 2.25 Total: -37.51 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: 0.04 Total: -46.81 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.70 Total: -11.44 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.35 kcal Total: -53.59 6.18 -47.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083966533.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.345 kcal (2) G-P(sol) polarization free energy of solvation -53.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds