Wall clock time and date at job start Mon Mar 30 2020 02:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.47262 * 2 1 4 4 C 1.50695 * 109.47188 * 240.00352 * 2 1 3 5 5 H 1.08003 * 119.99832 * 245.61550 * 4 2 1 6 6 C 1.37875 * 120.00559 * 65.60825 * 4 2 1 7 7 N 1.31506 * 120.00637 * 197.60821 * 6 4 2 8 8 Si 1.86805 * 119.99621 * 17.60924 * 6 4 2 9 9 H 1.48504 * 109.46979 * 180.02562 * 8 6 4 10 10 H 1.48496 * 109.47172 * 299.99748 * 8 6 4 11 11 H 1.48496 * 109.47297 * 59.99740 * 8 6 4 12 12 C 1.50697 * 109.47377 * 120.00111 * 2 1 3 13 13 C 1.38233 * 119.99791 * 59.72154 * 12 2 1 14 14 C 1.38237 * 119.99464 * 179.78815 * 13 12 2 15 15 C 1.38234 * 120.00535 * 0.46990 * 14 13 12 16 16 N 1.48015 * 120.00221 * 179.78663 * 15 14 13 17 17 O 1.21803 * 119.99953 * 179.97438 * 16 15 14 18 18 O 1.21802 * 120.00370 * 359.97438 * 16 15 14 19 19 C 1.38237 * 119.99526 * 359.76416 * 15 14 13 20 20 C 1.38230 * 119.99972 * 0.02608 * 19 15 14 21 21 H 1.09002 * 109.47035 * 306.17498 * 1 2 3 22 22 H 1.09000 * 109.47004 * 66.17277 * 1 2 3 23 23 H 1.08993 * 109.46687 * 186.17157 * 1 2 3 24 24 H 0.96998 * 119.99980 * 354.79629 * 7 6 4 25 25 H 1.07995 * 120.00510 * 0.02562 * 13 12 2 26 26 H 1.08012 * 119.99793 * 180.26011 * 14 13 12 27 27 H 1.08000 * 119.99638 * 179.97438 * 19 15 14 28 28 H 1.08002 * 119.99681 * 179.97438 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5765 -1.6383 -1.1340 6 6 1.7974 -0.1757 -2.4794 7 7 1.9141 -0.9301 -3.5503 8 14 1.3130 1.6203 -2.6505 9 1 1.1181 1.9458 -4.0863 10 1 0.0481 1.8644 -1.9120 11 1 2.3873 2.4783 -2.0893 12 6 2.0325 -0.7104 1.2304 13 6 1.6938 -2.0322 1.4520 14 6 2.1583 -2.6851 2.5785 15 6 2.9534 -2.0134 3.4882 16 7 3.4468 -2.7112 4.6967 17 8 4.1477 -2.1195 5.4981 18 8 3.1519 -3.8771 4.8900 19 6 3.2880 -0.6902 3.2690 20 6 2.8271 -0.0386 2.1404 21 1 -0.3633 0.6066 0.8296 22 1 -0.3633 0.4152 -0.9401 23 1 -0.3632 -1.0217 0.1105 24 1 2.2383 -1.8407 -3.4691 25 1 1.0695 -2.5558 0.7433 26 1 1.8971 -3.7191 2.7495 27 1 3.9089 -0.1654 3.9799 28 1 3.0883 0.9953 1.9693 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083966534.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:54 Heat of formation + Delta-G solvation = -9.165345 kcal Electronic energy + Delta-G solvation = -14367.639169 eV Core-core repulsion = 11771.773864 eV Total energy + Delta-G solvation = -2595.865305 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -43.26130 -40.62490 -37.69448 -36.57181 -33.98660 -32.35941 -31.37839 -27.43635 -26.71271 -24.25263 -23.77745 -21.57174 -20.35841 -19.86278 -19.45571 -18.64321 -17.04460 -16.29965 -15.87165 -15.53919 -15.00390 -14.74360 -14.36505 -14.16981 -13.71316 -13.14329 -12.76268 -12.61104 -12.49057 -12.32636 -12.31042 -12.10520 -11.71871 -11.53584 -11.08429 -10.43816 -10.31093 -10.20193 -8.73924 -6.39393 -1.16978 0.05399 0.37230 0.39039 1.50704 1.56814 1.74275 2.39100 2.50958 3.06654 3.45794 3.55729 3.78649 3.97543 4.12244 4.33434 4.53266 4.71982 4.75432 4.79989 4.87689 5.03158 5.16253 5.18736 5.39875 5.55674 5.65377 5.94956 6.03250 6.52301 6.54410 7.38724 8.63793 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.054903 B = 0.006722 C = 0.006464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.871961 B = 4164.199692 C = 4330.695069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.035 3.965 3 H 0.052 0.948 4 C -0.595 4.595 5 H 0.021 0.979 6 C -0.017 4.017 7 N -0.938 5.938 8 Si 1.079 2.921 9 H -0.298 1.298 10 H -0.237 1.237 11 H -0.259 1.259 12 C 0.010 3.990 13 C -0.119 4.119 14 C -0.053 4.053 15 C -0.081 4.081 16 N 0.038 4.962 17 O -0.173 6.173 18 O -0.194 6.194 19 C -0.044 4.044 20 C -0.125 4.125 21 H 0.059 0.941 22 H 0.051 0.949 23 H 0.045 0.955 24 H 0.252 0.748 25 H 0.138 0.862 26 H 0.158 0.842 27 H 0.172 0.828 28 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.145 3.765 11.713 12.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.016 3.984 3 H 0.070 0.930 4 C -0.633 4.633 5 H 0.039 0.961 6 C -0.215 4.215 7 N -0.574 5.574 8 Si 0.900 3.100 9 H -0.224 1.224 10 H -0.161 1.161 11 H -0.184 1.184 12 C 0.010 3.990 13 C -0.137 4.137 14 C -0.072 4.072 15 C -0.165 4.165 16 N 0.552 4.448 17 O -0.389 6.389 18 O -0.404 6.404 19 C -0.063 4.063 20 C -0.144 4.144 21 H 0.078 0.922 22 H 0.070 0.930 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.156 0.844 26 H 0.176 0.824 27 H 0.189 0.811 28 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -1.839 5.178 10.065 11.468 hybrid contribution 0.872 -2.147 0.907 2.488 sum -0.967 3.032 10.972 11.424 Atomic orbital electron populations 1.22186 0.95858 1.01130 1.01127 1.18339 0.94099 0.96219 0.89746 0.93034 1.22043 1.40009 1.08800 0.92451 0.96051 1.27189 0.94103 1.08418 0.91801 1.71002 1.43890 1.09531 1.32932 0.83656 0.79310 0.70723 0.76290 1.22444 1.16058 1.18381 1.20836 0.90398 0.93927 0.93872 1.21126 1.01353 0.94911 0.96347 1.21099 0.93115 1.01406 0.91628 1.21176 1.10009 0.95540 0.89727 1.43823 0.98223 1.00697 1.02102 1.94472 1.34784 1.67936 1.41666 1.94501 1.62549 1.01207 1.82126 1.21228 0.96509 0.90692 0.97903 1.21449 0.98192 1.02263 0.92477 0.92163 0.93046 0.93567 0.93861 0.84399 0.82443 0.81108 0.81326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.16 8.77 71.98 0.63 -4.53 15 2 C 0.03 1.36 2.06 -12.29 -0.03 1.34 15 3 H 0.05 1.88 6.53 -2.39 -0.02 1.87 15 4 C -0.60 -30.00 8.54 25.60 0.22 -29.78 15 5 H 0.02 1.20 7.78 -2.91 -0.02 1.18 15 6 C -0.02 -0.88 5.29 84.66 0.45 -0.44 15 7 N -0.94 -55.45 13.69 21.45 0.29 -55.16 15 8 Si 1.08 44.53 26.29 68.60 1.80 46.34 15 9 H -0.30 -12.95 7.11 99.48 0.71 -12.25 15 10 H -0.24 -8.37 5.76 99.48 0.57 -7.80 15 11 H -0.26 -9.69 7.11 99.48 0.71 -8.98 15 12 C 0.01 0.34 4.74 -19.87 -0.09 0.25 15 13 C -0.12 -3.91 8.59 22.27 0.19 -3.72 15 14 C -0.05 -1.60 9.56 22.27 0.21 -1.39 15 15 C -0.08 -2.44 6.85 36.37 0.25 -2.19 15 16 N 0.04 1.21 4.45 -46.47 -0.21 1.01 15 17 O -0.17 -5.51 18.45 18.88 0.35 -5.16 15 18 O -0.19 -6.50 18.45 18.88 0.35 -6.15 15 19 C -0.04 -1.17 9.56 22.27 0.21 -0.95 15 20 C -0.13 -3.46 9.67 22.27 0.22 -3.25 15 21 H 0.06 1.74 8.14 -2.39 -0.02 1.72 15 22 H 0.05 1.93 4.89 -2.39 -0.01 1.91 15 23 H 0.05 1.62 7.17 -2.39 -0.02 1.61 15 24 H 0.25 15.22 8.73 -92.71 -0.81 14.41 15 25 H 0.14 4.71 7.53 -2.91 -0.02 4.68 15 26 H 0.16 4.19 7.61 -2.90 -0.02 4.17 15 27 H 0.17 3.59 7.61 -2.91 -0.02 3.57 15 28 H 0.17 3.71 7.95 -2.91 -0.02 3.69 15 Total: -1.00 -59.85 248.89 5.85 -54.00 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: 1.00 Total: 9.79 kcal Atomic # 6 Polarization: -46.92 SS G_CDS: 2.26 Total: -44.66 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.09 Total: -54.15 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.70 Total: -11.31 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.80 Total: 46.34 kcal Total: -59.85 5.85 -54.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083966534.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.834 kcal (2) G-P(sol) polarization free energy of solvation -59.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds