Wall clock time and date at job start Mon Mar 30 2020 02:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99822 * 2 1 4 4 H 1.48505 * 109.46715 * 264.84508 * 3 2 1 5 5 H 1.48500 * 109.47401 * 24.84232 * 3 2 1 6 6 H 1.48493 * 109.47271 * 144.84832 * 3 2 1 7 7 C 1.37873 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00394 * 6.41662 * 7 2 1 9 9 C 1.50707 * 119.99887 * 186.42621 * 7 2 1 10 10 H 1.09003 * 109.24058 * 33.27992 * 9 7 2 11 11 C 1.52850 * 109.26934 * 273.78243 * 9 7 2 12 12 C 1.53433 * 108.84112 * 188.35114 * 11 9 7 13 13 N 1.46917 * 107.79155 * 63.23030 * 12 11 9 14 14 C 1.40078 * 118.90974 * 315.36998 * 13 12 11 15 15 C 1.39045 * 119.11483 * 193.26464 * 14 13 12 16 16 C 1.38037 * 120.07125 * 180.22712 * 15 14 13 17 17 C 1.38482 * 119.88115 * 0.04111 * 16 15 14 18 18 F 1.35106 * 119.94430 * 179.66017 * 17 16 15 19 19 C 1.38304 * 120.10923 * 359.93054 * 17 16 15 20 20 C 1.38521 * 120.28927 * 359.97438 * 19 17 16 21 21 H 0.97004 * 120.00175 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.57339 * 68.54103 * 11 9 7 23 23 H 1.08998 * 109.57642 * 308.15786 * 11 9 7 24 24 H 1.09005 * 109.79878 * 303.65371 * 12 11 9 25 25 H 1.09002 * 109.79375 * 182.80352 * 12 11 9 26 26 H 0.97002 * 120.54925 * 135.38939 * 13 12 11 27 27 H 1.08001 * 119.96302 * 0.21271 * 15 14 13 28 28 H 1.08000 * 120.05361 * 180.02562 * 16 15 14 29 29 H 1.08000 * 119.85453 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6055 1.9835 -1.3945 5 1 1.3963 2.6817 0.5882 6 1 3.4879 1.4742 0.8060 7 6 2.0045 -1.1940 -0.0005 8 1 1.4697 -2.1264 -0.1055 9 6 3.5045 -1.1981 0.1455 10 1 3.8049 -0.3720 0.7900 11 6 4.1458 -1.0233 -1.2308 12 6 5.6597 -1.2375 -1.1029 13 7 5.8821 -2.6251 -0.6744 14 6 5.0883 -3.1522 0.3524 15 6 5.4649 -4.3487 0.9522 16 6 4.6947 -4.8884 1.9627 17 6 3.5456 -4.2363 2.3775 18 9 2.7871 -4.7668 3.3617 19 6 3.1701 -3.0457 1.7822 20 6 3.9398 -2.4980 0.7690 21 1 -0.4850 0.8401 0.0004 22 1 3.9493 -0.0167 -1.6001 23 1 3.7305 -1.7557 -1.9230 24 1 6.0682 -0.5518 -0.3605 25 1 6.1393 -1.0675 -2.0669 26 1 6.5675 -3.1673 -1.0953 27 1 6.3609 -4.8566 0.6270 28 1 4.9877 -5.8176 2.4287 29 1 2.2730 -2.5408 2.1086 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083966593.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:58 Heat of formation + Delta-G solvation = -24.900281 kcal Electronic energy + Delta-G solvation = -14840.333510 eV Core-core repulsion = 12256.158676 eV Total energy + Delta-G solvation = -2584.174833 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.09298 -39.36817 -35.59555 -33.83394 -31.64994 -29.68159 -28.76728 -25.93037 -22.98341 -22.47739 -21.38542 -19.00841 -17.04603 -16.99775 -16.28794 -15.93490 -14.83113 -14.45678 -14.38924 -13.70103 -13.24758 -12.96689 -12.67849 -12.44091 -12.34274 -12.07640 -11.79945 -11.14683 -10.95634 -10.61612 -10.22012 -9.91779 -9.60390 -9.35891 -9.14479 -8.56874 -8.09723 -6.76612 -6.13088 -4.12671 1.93759 2.02009 3.22541 3.30646 3.32548 3.91400 4.33465 4.35174 5.03320 5.12759 5.32202 5.49316 5.57589 5.78119 5.83502 5.98656 6.02103 6.13450 6.45949 6.56342 6.68705 6.73934 6.86817 6.94474 7.15935 7.38112 7.46105 7.65868 7.84794 8.21741 8.46940 8.92949 9.47730 10.99542 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.026908 B = 0.011802 C = 0.008740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.345785 B = 2372.001446 C = 3202.911040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.871 3.129 4 H -0.274 1.274 5 H -0.289 1.289 6 H -0.262 1.262 7 C -0.508 4.508 8 H 0.077 0.923 9 C 0.044 3.956 10 H 0.051 0.949 11 C -0.132 4.132 12 C 0.118 3.882 13 N -0.753 5.753 14 C 0.192 3.808 15 C -0.177 4.177 16 C -0.130 4.130 17 C 0.030 3.970 18 F -0.155 7.155 19 C -0.090 4.090 20 C -0.077 4.077 21 H 0.265 0.735 22 H 0.061 0.939 23 H 0.066 0.934 24 H 0.050 0.950 25 H 0.067 0.933 26 H 0.394 0.606 27 H 0.118 0.882 28 H 0.122 0.878 29 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.658 -4.168 -0.073 12.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.129 4.129 3 Si 0.699 3.301 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.187 1.187 7 C -0.545 4.545 8 H 0.095 0.905 9 C 0.026 3.974 10 H 0.068 0.932 11 C -0.171 4.171 12 C -0.007 4.007 13 N -0.385 5.385 14 C 0.090 3.910 15 C -0.200 4.200 16 C -0.150 4.150 17 C 0.009 3.991 18 F -0.134 7.134 19 C -0.109 4.109 20 C -0.082 4.082 21 H 0.075 0.925 22 H 0.079 0.921 23 H 0.085 0.915 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.227 0.773 27 H 0.136 0.864 28 H 0.140 0.860 29 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 11.395 -3.860 -0.081 12.031 hybrid contribution 0.461 0.577 -0.117 0.748 sum 11.856 -3.283 -0.198 12.304 Atomic orbital electron populations 1.69901 1.06234 1.27046 1.50114 1.25027 0.94668 0.98830 0.94370 0.86995 0.80383 0.83942 0.78774 1.20020 1.21534 1.18724 1.20921 0.88290 0.94837 1.50468 0.90475 1.18193 0.96999 0.90594 0.91630 0.93164 1.22229 0.92418 1.01443 1.00997 1.21672 0.98238 0.82460 0.98289 1.44566 1.40224 1.13733 1.39955 1.17750 0.90760 0.92946 0.89530 1.20298 1.01778 0.97683 1.00232 1.20616 0.94899 1.00385 0.99075 1.17545 0.93170 0.96063 0.92289 1.91408 1.75460 1.86270 1.60242 1.21167 1.00566 0.93595 0.95562 1.19679 0.91925 0.99343 0.97221 0.92524 0.92055 0.91485 0.93203 0.91494 0.77251 0.86380 0.86024 0.83770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.61 13.96 55.43 0.77 -25.84 15 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 15 3 Si 0.87 20.53 25.91 -169.99 -4.40 16.13 15 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15 6 H -0.26 -5.89 6.11 56.52 0.35 -5.55 15 7 C -0.51 -13.65 7.54 -34.44 -0.26 -13.91 15 8 H 0.08 2.30 7.85 -52.49 -0.41 1.89 15 9 C 0.04 1.01 1.84 -93.05 -0.17 0.84 15 10 H 0.05 1.18 5.66 -51.93 -0.29 0.89 15 11 C -0.13 -2.61 5.17 -26.58 -0.14 -2.75 15 12 C 0.12 1.85 7.11 -3.59 -0.03 1.82 15 13 N -0.75 -11.54 5.81 -58.06 -0.34 -11.88 15 14 C 0.19 3.46 6.48 -83.66 -0.54 2.92 15 15 C -0.18 -2.82 9.87 -39.36 -0.39 -3.21 15 16 C -0.13 -2.16 10.03 -39.56 -0.40 -2.56 15 17 C 0.03 0.58 7.29 -39.47 -0.29 0.29 15 18 F -0.15 -3.00 17.26 2.25 0.04 -2.96 15 19 C -0.09 -1.91 8.94 -39.45 -0.35 -2.27 15 20 C -0.08 -1.64 5.46 -104.44 -0.57 -2.21 15 21 H 0.26 7.40 8.31 -40.82 -0.34 7.06 15 22 H 0.06 1.21 6.37 -51.93 -0.33 0.88 15 23 H 0.07 1.38 8.12 -51.93 -0.42 0.96 15 24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 25 H 0.07 0.84 8.14 -51.93 -0.42 0.42 15 26 H 0.39 4.77 8.86 -40.82 -0.36 4.41 15 27 H 0.12 1.50 8.06 -52.49 -0.42 1.08 15 28 H 0.12 1.68 8.06 -52.49 -0.42 1.26 15 29 H 0.14 3.32 7.25 -52.49 -0.38 2.94 15 LS Contribution 243.30 15.07 3.67 3.67 Total: -1.00 -29.15 243.30 -6.58 -35.72 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -3.08 Total: 4.26 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -3.23 Total: -19.09 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.44 Total: -37.72 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.04 Total: -2.96 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.40 Total: 16.13 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -29.15 -6.58 -35.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083966593.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.824 kcal (2) G-P(sol) polarization free energy of solvation -29.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds