Wall clock time and date at job start Mon Mar 30 2020 02:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99822 * 2 1 4 4 H 1.48505 * 109.46715 * 264.84508 * 3 2 1 5 5 H 1.48500 * 109.47401 * 24.84232 * 3 2 1 6 6 H 1.48493 * 109.47271 * 144.84832 * 3 2 1 7 7 C 1.37873 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00394 * 6.41662 * 7 2 1 9 9 C 1.50707 * 119.99887 * 186.42621 * 7 2 1 10 10 H 1.09003 * 109.24058 * 33.27992 * 9 7 2 11 11 C 1.52850 * 109.26934 * 273.78243 * 9 7 2 12 12 C 1.53433 * 108.84112 * 188.35114 * 11 9 7 13 13 N 1.46917 * 107.79155 * 63.23030 * 12 11 9 14 14 C 1.40078 * 118.90974 * 315.36998 * 13 12 11 15 15 C 1.39045 * 119.11483 * 193.26464 * 14 13 12 16 16 C 1.38037 * 120.07125 * 180.22712 * 15 14 13 17 17 C 1.38482 * 119.88115 * 0.04111 * 16 15 14 18 18 F 1.35106 * 119.94430 * 179.66017 * 17 16 15 19 19 C 1.38304 * 120.10923 * 359.93054 * 17 16 15 20 20 C 1.38521 * 120.28927 * 359.97438 * 19 17 16 21 21 H 0.97004 * 120.00175 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.57339 * 68.54103 * 11 9 7 23 23 H 1.08998 * 109.57642 * 308.15786 * 11 9 7 24 24 H 1.09005 * 109.79878 * 303.65371 * 12 11 9 25 25 H 1.09002 * 109.79375 * 182.80352 * 12 11 9 26 26 H 0.97002 * 120.54925 * 135.38939 * 13 12 11 27 27 H 1.08001 * 119.96302 * 0.21271 * 15 14 13 28 28 H 1.08000 * 120.05361 * 180.02562 * 16 15 14 29 29 H 1.08000 * 119.85453 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6055 1.9835 -1.3945 5 1 1.3963 2.6817 0.5882 6 1 3.4879 1.4742 0.8060 7 6 2.0045 -1.1940 -0.0005 8 1 1.4697 -2.1264 -0.1055 9 6 3.5045 -1.1981 0.1455 10 1 3.8049 -0.3720 0.7900 11 6 4.1458 -1.0233 -1.2308 12 6 5.6597 -1.2375 -1.1029 13 7 5.8821 -2.6251 -0.6744 14 6 5.0883 -3.1522 0.3524 15 6 5.4649 -4.3487 0.9522 16 6 4.6947 -4.8884 1.9627 17 6 3.5456 -4.2363 2.3775 18 9 2.7871 -4.7668 3.3617 19 6 3.1701 -3.0457 1.7822 20 6 3.9398 -2.4980 0.7690 21 1 -0.4850 0.8401 0.0004 22 1 3.9493 -0.0167 -1.6001 23 1 3.7305 -1.7557 -1.9230 24 1 6.0682 -0.5518 -0.3605 25 1 6.1393 -1.0675 -2.0669 26 1 6.5675 -3.1673 -1.0953 27 1 6.3609 -4.8566 0.6270 28 1 4.9877 -5.8176 2.4287 29 1 2.2730 -2.5408 2.1086 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083966593.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:58 Heat of formation + Delta-G solvation = -44.123944 kcal Electronic energy + Delta-G solvation = -14841.167110 eV Core-core repulsion = 12256.158676 eV Total energy + Delta-G solvation = -2585.008434 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.61225 -40.82848 -37.03832 -35.56285 -33.56771 -31.10656 -30.28320 -27.71463 -24.56621 -23.92307 -22.99825 -20.54078 -19.06215 -18.40238 -17.83707 -17.36554 -16.39546 -16.31793 -15.83490 -15.18606 -14.80250 -14.64057 -14.33297 -13.97053 -13.80950 -13.51282 -13.39950 -12.89187 -12.54042 -12.41078 -11.86665 -11.70542 -11.29785 -11.18498 -10.67787 -10.58796 -9.62791 -8.28374 -8.12682 -6.31788 0.48911 0.54789 1.33540 1.37037 1.46153 2.34577 2.68335 2.85924 3.05479 3.59513 3.96325 4.09148 4.28332 4.37954 4.39136 4.54420 4.60572 4.79098 4.94201 5.05407 5.15173 5.22498 5.40092 5.40519 5.46556 5.66829 5.85506 5.97728 6.33156 6.43305 6.74145 7.11463 7.31539 8.88513 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.026908 B = 0.011802 C = 0.008740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.345785 B = 2372.001446 C = 3202.911040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.010 3.990 3 Si 0.939 3.061 4 H -0.254 1.254 5 H -0.293 1.293 6 H -0.242 1.242 7 C -0.504 4.504 8 H 0.025 0.975 9 C 0.045 3.955 10 H 0.042 0.958 11 C -0.131 4.131 12 C 0.124 3.876 13 N -0.739 5.739 14 C 0.195 3.805 15 C -0.160 4.160 16 C -0.113 4.113 17 C 0.009 3.991 18 F -0.161 7.161 19 C -0.115 4.115 20 C -0.114 4.114 21 H 0.265 0.735 22 H 0.061 0.939 23 H 0.051 0.949 24 H 0.057 0.943 25 H 0.110 0.890 26 H 0.415 0.585 27 H 0.167 0.833 28 H 0.160 0.840 29 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.884 -4.603 -0.928 16.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.187 4.187 3 Si 0.763 3.237 4 H -0.179 1.179 5 H -0.220 1.220 6 H -0.166 1.166 7 C -0.542 4.542 8 H 0.044 0.956 9 C 0.026 3.974 10 H 0.060 0.940 11 C -0.169 4.169 12 C -0.001 4.001 13 N -0.372 5.372 14 C 0.091 3.909 15 C -0.182 4.182 16 C -0.132 4.132 17 C -0.012 4.012 18 F -0.141 7.141 19 C -0.135 4.135 20 C -0.118 4.118 21 H 0.074 0.926 22 H 0.079 0.921 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.128 0.872 26 H 0.253 0.747 27 H 0.184 0.816 28 H 0.177 0.823 29 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 15.672 -4.317 -0.962 16.284 hybrid contribution -0.882 0.564 0.167 1.060 sum 14.790 -3.753 -0.794 15.279 Atomic orbital electron populations 1.70078 1.08382 1.28041 1.52652 1.25952 0.95434 1.03103 0.94202 0.85902 0.79419 0.78368 0.80038 1.17860 1.21966 1.16604 1.21107 0.91100 0.92797 1.49174 0.95650 1.18102 0.93981 0.91676 0.93624 0.94048 1.22075 0.95768 1.01022 0.98061 1.21683 0.94814 0.82697 1.00873 1.44533 1.39897 1.13935 1.38877 1.17837 0.89801 0.93317 0.89913 1.20779 1.02539 0.96316 0.98608 1.21038 0.92875 1.00902 0.98372 1.17719 0.94655 0.95975 0.92829 1.91382 1.75944 1.86197 1.60527 1.20965 1.00052 0.95190 0.97277 1.19576 0.94164 0.99727 0.98339 0.92597 0.92062 0.93047 0.92437 0.87158 0.74702 0.81579 0.82283 0.87826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.95 13.96 21.45 0.30 -59.65 15 2 C 0.01 0.57 5.47 84.65 0.46 1.03 15 3 Si 0.94 43.05 25.91 68.60 1.78 44.83 15 4 H -0.25 -10.77 7.11 99.48 0.71 -10.06 15 5 H -0.29 -13.55 7.11 99.48 0.71 -12.84 15 6 H -0.24 -10.23 6.11 99.48 0.61 -9.62 15 7 C -0.50 -28.79 7.54 25.60 0.19 -28.60 15 8 H 0.03 1.65 7.85 -2.91 -0.02 1.63 15 9 C 0.04 2.07 1.84 -12.37 -0.02 2.04 15 10 H 0.04 1.95 5.66 -2.39 -0.01 1.94 15 11 C -0.13 -4.95 5.17 30.69 0.16 -4.79 15 12 C 0.12 3.33 7.11 86.45 0.61 3.95 15 13 N -0.74 -19.21 5.81 -337.59 -1.96 -21.17 15 14 C 0.19 6.45 6.48 38.10 0.25 6.69 15 15 C -0.16 -4.34 9.87 22.42 0.22 -4.12 15 16 C -0.11 -3.36 10.03 22.28 0.22 -3.13 15 17 C 0.01 0.35 7.29 22.34 0.16 0.51 15 18 F -0.16 -6.38 17.26 44.97 0.78 -5.60 15 19 C -0.12 -5.19 8.94 22.35 0.20 -4.99 15 20 C -0.11 -4.84 5.46 -19.75 -0.11 -4.94 15 21 H 0.27 15.64 8.31 -92.71 -0.77 14.87 15 22 H 0.06 2.29 6.37 -2.39 -0.02 2.28 15 23 H 0.05 2.08 8.12 -2.39 -0.02 2.06 15 24 H 0.06 1.52 8.14 -2.38 -0.02 1.51 15 25 H 0.11 2.11 8.14 -2.39 -0.02 2.09 15 26 H 0.42 7.53 8.86 -92.71 -0.82 6.71 15 27 H 0.17 2.99 8.06 -2.91 -0.02 2.97 15 28 H 0.16 3.57 8.06 -2.91 -0.02 3.55 15 29 H 0.10 5.34 7.25 -2.91 -0.02 5.32 15 Total: -1.00 -69.05 243.30 3.50 -65.56 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 0.25 Total: 12.39 kcal Atomic # 6 Polarization: -38.70 SS G_CDS: 2.35 Total: -36.35 kcal Atomic # 7 Polarization: -79.16 SS G_CDS: -1.66 Total: -80.82 kcal Atomic # 9 Polarization: -6.38 SS G_CDS: 0.78 Total: -5.60 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 1.78 Total: 44.83 kcal Total: -69.05 3.50 -65.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083966593.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.432 kcal (2) G-P(sol) polarization free energy of solvation -69.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds