Wall clock time and date at job start Mon Mar 30 2020 02:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99620 * 2 1 4 4 H 1.48500 * 109.47009 * 239.99708 * 3 2 1 5 5 H 1.48497 * 109.47166 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47022 * 119.99866 * 3 2 1 7 7 C 1.37869 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00175 * 186.12289 * 7 2 1 9 9 C 1.50706 * 120.00400 * 6.11625 * 7 2 1 10 10 H 1.08999 * 109.12511 * 334.51883 * 9 7 2 11 11 C 1.52856 * 109.29713 * 93.99268 * 9 7 2 12 12 C 1.53426 * 108.84490 * 171.66287 * 11 9 7 13 13 N 1.46921 * 107.80027 * 296.80558 * 12 11 9 14 14 C 1.39920 * 118.92187 * 44.68028 * 13 12 11 15 15 C 1.39029 * 119.10985 * 166.46436 * 14 13 12 16 16 C 1.38245 * 120.01554 * 179.78230 * 15 14 13 17 17 F 1.35097 * 120.07268 * 180.02562 * 16 15 14 18 18 C 1.38545 * 119.85205 * 0.02562 * 16 15 14 19 19 C 1.38076 * 120.13344 * 0.10281 * 18 16 15 20 20 C 1.38514 * 120.34394 * 359.97438 * 19 18 16 21 21 H 0.96997 * 120.00723 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.57567 * 291.47472 * 11 9 7 23 23 H 1.09004 * 109.57242 * 51.72815 * 11 9 7 24 24 H 1.09001 * 109.79841 * 177.22991 * 12 11 9 25 25 H 1.09007 * 109.79676 * 56.37677 * 12 11 9 26 26 H 0.97001 * 120.53878 * 224.96202 * 13 12 11 27 27 H 1.08005 * 119.99479 * 359.81126 * 15 14 13 28 28 H 1.08004 * 119.92730 * 180.02562 * 18 16 15 29 29 H 1.08002 * 119.82733 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0799 -1.1967 0.0992 9 6 1.2575 -2.4954 -0.1402 10 1 0.2367 -2.3615 0.2179 11 6 1.2266 -2.9047 -1.6126 12 6 0.6523 -4.3233 -1.7207 13 7 1.5671 -5.2330 -1.0178 14 6 2.0654 -4.8572 0.2345 15 6 2.6923 -5.8119 1.0272 16 6 3.1954 -5.4600 2.2658 17 9 3.8053 -6.3867 3.0369 18 6 3.0729 -4.1550 2.7146 19 6 2.4480 -3.2075 1.9284 20 6 1.9400 -3.5529 0.6870 21 1 -0.4851 0.8400 -0.0004 22 1 0.5969 -2.2121 -2.1710 23 1 2.2383 -2.8864 -2.0180 24 1 0.5775 -4.6124 -2.7690 25 1 -0.3331 -4.3590 -1.2560 26 1 1.8247 -6.0786 -1.4173 27 1 2.7866 -6.8286 0.6752 28 1 3.4660 -3.8787 3.6819 29 1 2.3556 -2.1915 2.2829 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083966600.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:54 Heat of formation + Delta-G solvation = -45.658573 kcal Electronic energy + Delta-G solvation = -14729.833952 eV Core-core repulsion = 12144.758972 eV Total energy + Delta-G solvation = -2585.074980 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.75287 -40.74250 -36.95136 -35.57779 -33.19867 -30.92828 -30.19741 -27.56158 -24.70676 -23.76677 -23.16852 -20.47098 -18.74339 -18.41150 -17.76763 -16.91887 -16.45582 -16.26428 -16.01568 -15.23996 -14.89825 -14.42836 -14.13916 -14.12946 -13.71957 -13.36787 -13.05399 -12.80711 -12.49136 -12.18716 -12.11172 -11.75460 -11.08241 -11.01368 -10.72375 -10.55419 -9.39719 -8.27423 -8.07198 -6.19576 0.46618 0.65782 1.43528 1.44303 1.51966 2.43812 2.60465 2.92793 3.17977 3.56363 4.05145 4.24585 4.29830 4.43909 4.47344 4.62743 4.68204 4.75937 5.09343 5.17646 5.27204 5.41241 5.48060 5.53392 5.66706 5.82640 5.95704 6.11986 6.36989 6.45960 6.92612 7.08326 7.45769 8.96229 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.030639 B = 0.009697 C = 0.007795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.643256 B = 2886.757875 C = 3591.262978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.019 3.981 3 Si 0.948 3.052 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.514 4.514 8 H 0.047 0.953 9 C 0.071 3.929 10 H 0.033 0.967 11 C -0.116 4.116 12 C 0.128 3.872 13 N -0.739 5.739 14 C 0.222 3.778 15 C -0.230 4.230 16 C 0.110 3.890 17 F -0.147 7.147 18 C -0.214 4.214 19 C -0.050 4.050 20 C -0.145 4.145 21 H 0.262 0.738 22 H 0.049 0.951 23 H 0.045 0.955 24 H 0.105 0.895 25 H 0.048 0.952 26 H 0.412 0.588 27 H 0.151 0.849 28 H 0.139 0.861 29 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.160 -9.465 -0.980 10.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.179 4.179 3 Si 0.774 3.226 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.553 4.553 8 H 0.066 0.934 9 C 0.052 3.948 10 H 0.051 0.949 11 C -0.155 4.155 12 C 0.004 3.996 13 N -0.372 5.372 14 C 0.118 3.882 15 C -0.253 4.253 16 C 0.090 3.910 17 F -0.125 7.125 18 C -0.235 4.235 19 C -0.069 4.069 20 C -0.150 4.150 21 H 0.071 0.929 22 H 0.068 0.932 23 H 0.064 0.936 24 H 0.123 0.877 25 H 0.066 0.934 26 H 0.249 0.751 27 H 0.168 0.832 28 H 0.157 0.843 29 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.890 -9.247 -1.056 9.746 hybrid contribution 0.457 0.819 0.105 0.944 sum 3.347 -8.428 -0.950 9.118 Atomic orbital electron populations 1.70013 1.07193 1.27469 1.51644 1.25646 0.95506 1.02140 0.94657 0.85765 0.78502 0.79468 0.78890 1.19740 1.21061 1.19673 1.21233 0.93024 0.91272 1.49725 0.93438 1.17654 0.95592 0.90562 0.90969 0.94899 1.21839 0.99483 0.95434 0.98717 1.21627 0.91590 0.89163 0.97265 1.44546 1.52131 1.23245 1.17242 1.17450 0.92752 0.91247 0.86709 1.20572 1.09452 1.00467 0.94813 1.17327 0.97303 0.86283 0.90060 1.91427 1.81083 1.65311 1.74718 1.20965 1.07770 0.91978 1.02752 1.20853 0.94347 0.98855 0.92894 1.20243 1.04100 0.93281 0.97351 0.92851 0.93176 0.93624 0.87712 0.93414 0.75106 0.83167 0.84277 0.86296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.60 12.76 21.44 0.27 -52.32 15 2 C 0.02 1.04 5.45 84.65 0.46 1.50 15 3 Si 0.95 42.82 29.54 68.60 2.03 44.85 15 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 5 H -0.29 -12.68 7.11 99.48 0.71 -11.97 15 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 15 7 C -0.51 -27.51 6.88 25.60 0.18 -27.34 15 8 H 0.05 2.56 7.80 -2.91 -0.02 2.54 15 9 C 0.07 3.46 2.40 -12.36 -0.03 3.43 15 10 H 0.03 1.85 7.22 -2.39 -0.02 1.83 15 11 C -0.12 -4.86 5.38 30.69 0.16 -4.69 15 12 C 0.13 4.07 7.11 86.44 0.61 4.69 15 13 N -0.74 -22.42 5.80 -337.71 -1.96 -24.38 15 14 C 0.22 8.14 6.47 38.13 0.25 8.39 15 15 C -0.23 -7.49 9.85 22.46 0.22 -7.26 15 16 C 0.11 3.77 7.30 22.34 0.16 3.93 15 17 F -0.15 -4.71 17.27 44.97 0.78 -3.94 15 18 C -0.21 -7.75 10.02 22.30 0.22 -7.53 15 19 C -0.05 -2.13 9.08 22.30 0.20 -1.93 15 20 C -0.15 -6.35 5.47 -19.74 -0.11 -6.46 15 21 H 0.26 14.27 8.31 -92.71 -0.77 13.50 15 22 H 0.05 2.22 8.14 -2.39 -0.02 2.20 15 23 H 0.04 1.93 8.12 -2.38 -0.02 1.91 15 24 H 0.10 2.52 8.14 -2.39 -0.02 2.50 15 25 H 0.05 1.59 8.14 -2.38 -0.02 1.57 15 26 H 0.41 9.40 8.86 -92.71 -0.82 8.58 15 27 H 0.15 3.92 8.06 -2.91 -0.02 3.89 15 28 H 0.14 4.37 8.06 -2.91 -0.02 4.35 15 29 H 0.12 5.36 7.24 -2.91 -0.02 5.34 15 Total: -1.00 -59.19 250.21 3.80 -55.39 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.34 Total: 13.67 kcal Atomic # 6 Polarization: -35.60 SS G_CDS: 2.34 Total: -33.27 kcal Atomic # 7 Polarization: -75.02 SS G_CDS: -1.68 Total: -76.70 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 0.78 Total: -3.94 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -59.19 3.80 -55.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083966600.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.734 kcal (2) G-P(sol) polarization free energy of solvation -59.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds