Wall clock time and date at job start Mon Mar 30 2020 02:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99702 * 2 1 4 4 H 1.48502 * 109.47462 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46993 * 119.99865 * 3 2 1 6 6 H 1.48498 * 109.47643 * 239.99862 * 3 2 1 7 7 C 1.37874 * 120.00382 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99822 * 173.88913 * 7 2 1 9 9 C 1.50704 * 120.00006 * 353.88870 * 7 2 1 10 10 H 1.09001 * 109.43463 * 326.73007 * 9 7 2 11 11 C 1.53036 * 109.43910 * 86.65070 * 9 7 2 12 12 C 1.53384 * 107.92509 * 167.38488 * 11 9 7 13 13 N 1.46427 * 108.63868 * 291.71264 * 12 11 9 14 14 C 1.39580 * 113.11820 * 53.28174 * 13 12 11 15 15 C 1.39801 * 117.65128 * 160.15165 * 14 13 12 16 16 F 1.35103 * 119.80893 * 359.73065 * 15 14 13 17 17 C 1.37964 * 120.38502 * 179.70511 * 15 14 13 18 18 C 1.38339 * 119.92224 * 0.02562 * 17 15 14 19 19 C 1.38006 * 119.90036 * 0.11241 * 18 17 15 20 20 C 1.38207 * 122.95180 * 340.03484 * 14 13 12 21 21 H 0.97003 * 119.99731 * 174.30984 * 1 2 3 22 22 H 1.09004 * 109.77037 * 286.99062 * 11 9 7 23 23 H 1.09000 * 109.77102 * 47.72357 * 11 9 7 24 24 H 1.09009 * 109.60574 * 51.45456 * 12 11 9 25 25 H 1.08998 * 109.60890 * 171.79130 * 12 11 9 26 26 H 1.00900 * 111.00073 * 287.75122 * 13 12 11 27 27 H 1.08002 * 120.03821 * 179.97438 * 17 15 14 28 28 H 1.08007 * 120.04776 * 180.14128 * 18 17 15 29 29 H 1.08004 * 119.73416 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1028 1.6965 1.2126 6 1 3.1029 1.6966 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0800 -1.1965 -0.1001 9 6 1.2576 -2.4955 0.1378 10 1 0.3876 -2.3481 0.7778 11 6 0.7995 -2.9692 -1.2434 12 6 0.3331 -4.4245 -1.1127 13 7 1.4978 -5.2655 -0.8291 14 6 2.2394 -4.8228 0.2674 15 6 3.0929 -5.7407 0.8866 16 9 3.1706 -7.0062 0.4199 17 6 3.8567 -5.3617 1.9713 18 6 3.7789 -4.0665 2.4512 19 6 2.9357 -3.1577 1.8449 20 6 2.1641 -3.5314 0.7539 21 1 -0.4850 -0.8360 -0.0833 22 1 -0.0254 -2.3475 -1.5915 23 1 1.6292 -2.9089 -1.9478 24 1 -0.3849 -4.5066 -0.2966 25 1 -0.1339 -4.7441 -2.0443 26 1 2.0823 -5.3612 -1.6459 27 1 4.5138 -6.0755 2.4456 28 1 4.3776 -3.7670 3.2987 29 1 2.8768 -2.1473 2.2221 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083966616.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:00 Heat of formation + Delta-G solvation = -33.871409 kcal Electronic energy + Delta-G solvation = -14927.692622 eV Core-core repulsion = 12343.128771 eV Total energy + Delta-G solvation = -2584.563851 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.29672 -39.52586 -36.02974 -34.06251 -31.07922 -29.85302 -28.46336 -25.36925 -23.03213 -22.54611 -21.36211 -19.39156 -17.40279 -16.48688 -16.19990 -15.87939 -15.09380 -14.38134 -14.32402 -13.82489 -13.51086 -13.14986 -12.79348 -12.36786 -11.88641 -11.46798 -11.30116 -11.18471 -11.00157 -10.87543 -10.19913 -10.11583 -9.78362 -9.32057 -8.73651 -8.41579 -7.93760 -7.43238 -6.48049 -4.22262 1.75905 1.82932 3.37089 3.37514 3.56684 4.16370 4.39594 4.44263 4.84273 5.18314 5.29564 5.53468 5.68795 5.70962 5.81490 5.98814 6.01943 6.13362 6.48547 6.53889 6.64619 6.78352 6.89557 6.92215 7.11513 7.29454 7.42672 7.56905 7.79810 8.03015 8.30197 8.71377 9.48534 10.88443 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.035703 B = 0.009821 C = 0.008131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.059673 B = 2850.472550 C = 3442.727174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.024 3.976 3 Si 1.065 2.935 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.288 1.288 7 C -0.589 4.589 8 H 0.052 0.948 9 C 0.063 3.937 10 H 0.050 0.950 11 C -0.146 4.146 12 C 0.054 3.946 13 N -0.636 5.636 14 C 0.063 3.937 15 C 0.076 3.924 16 F -0.144 7.144 17 C -0.164 4.164 18 C -0.121 4.121 19 C -0.094 4.094 20 C -0.053 4.053 21 H 0.271 0.729 22 H 0.065 0.935 23 H 0.054 0.946 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.349 0.651 27 H 0.124 0.876 28 H 0.123 0.877 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.503 -7.097 1.112 8.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.181 4.181 3 Si 0.893 3.107 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.214 1.214 7 C -0.627 4.627 8 H 0.071 0.929 9 C 0.044 3.956 10 H 0.068 0.932 11 C -0.186 4.186 12 C -0.074 4.074 13 N -0.264 5.264 14 C -0.035 4.035 15 C 0.055 3.945 16 F -0.123 7.123 17 C -0.183 4.183 18 C -0.140 4.140 19 C -0.113 4.113 20 C -0.056 4.056 21 H 0.082 0.918 22 H 0.084 0.916 23 H 0.072 0.928 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.174 0.826 27 H 0.142 0.858 28 H 0.141 0.859 29 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.910 -5.954 1.461 7.272 hybrid contribution 0.657 -1.229 -0.577 1.509 sum 4.567 -7.183 0.884 8.558 Atomic orbital electron populations 1.70808 1.06902 1.30935 1.45504 1.25840 0.96415 1.02538 0.93299 0.83594 0.74995 0.75420 0.76698 1.20720 1.21259 1.21422 1.21820 0.94632 0.90632 1.55602 0.92924 1.18029 0.94095 0.91926 0.91506 0.93221 1.22478 1.00828 0.94451 1.00826 1.22193 0.91690 0.92413 1.01105 1.57089 1.10607 1.51501 1.07169 1.18535 0.96719 0.91520 0.96743 1.17580 1.01357 0.78982 0.96591 1.91409 1.95519 1.37143 1.88253 1.20771 1.02052 0.97910 0.97600 1.20887 0.99980 0.92671 1.00469 1.21288 0.94962 1.00025 0.95045 1.20584 0.97624 0.91582 0.95762 0.91820 0.91619 0.92753 0.91011 0.91101 0.82600 0.85756 0.85949 0.84743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.74 13.56 55.43 0.75 -24.99 15 2 C 0.02 0.64 5.45 -17.82 -0.10 0.55 15 3 Si 1.07 23.90 29.91 -169.99 -5.08 18.82 15 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 5 H -0.29 -6.14 7.11 56.52 0.40 -5.73 15 6 H -0.29 -6.24 7.11 56.52 0.40 -5.84 15 7 C -0.59 -15.37 7.08 -34.44 -0.24 -15.62 15 8 H 0.05 1.40 7.74 -52.49 -0.41 0.99 15 9 C 0.06 1.49 1.86 -92.85 -0.17 1.31 15 10 H 0.05 1.29 7.05 -51.93 -0.37 0.92 15 11 C -0.15 -3.11 5.41 -26.51 -0.14 -3.25 15 12 C 0.05 0.98 6.61 -3.88 -0.03 0.96 15 13 N -0.64 -11.63 6.24 -58.45 -0.36 -11.99 15 14 C 0.06 1.26 6.13 -83.76 -0.51 0.75 15 15 C 0.08 1.41 7.29 -39.10 -0.29 1.13 15 16 F -0.14 -2.63 16.96 2.25 0.04 -2.59 15 17 C -0.16 -2.72 10.01 -39.64 -0.40 -3.11 15 18 C -0.12 -2.03 10.05 -39.63 -0.40 -2.43 15 19 C -0.09 -1.88 9.02 -39.48 -0.36 -2.24 15 20 C -0.05 -1.13 5.40 -104.39 -0.56 -1.69 15 21 H 0.27 7.59 6.20 -40.82 -0.25 7.33 15 22 H 0.07 1.46 7.47 -51.93 -0.39 1.07 15 23 H 0.05 1.18 8.09 -51.93 -0.42 0.76 15 24 H 0.07 1.33 8.11 -51.92 -0.42 0.91 15 25 H 0.07 1.09 8.14 -51.93 -0.42 0.67 15 26 H 0.35 5.82 8.84 -39.29 -0.35 5.47 15 27 H 0.12 1.70 8.06 -52.49 -0.42 1.28 15 28 H 0.12 1.66 8.06 -52.48 -0.42 1.24 15 29 H 0.13 2.77 7.40 -52.48 -0.39 2.38 15 LS Contribution 247.44 15.07 3.73 3.73 Total: -1.00 -28.05 247.44 -7.18 -35.23 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -3.05 Total: 5.45 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: -3.20 Total: -23.65 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.39 Total: -36.98 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.04 Total: -2.59 kcal Atomic # 14 Polarization: 23.90 SS G_CDS: -5.08 Total: 18.82 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -28.05 -7.18 -35.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083966616.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.354 kcal (2) G-P(sol) polarization free energy of solvation -28.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds