Wall clock time and date at job start Mon Mar 30 2020 02:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99702 * 2 1 4 4 H 1.48502 * 109.47462 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46993 * 119.99865 * 3 2 1 6 6 H 1.48498 * 109.47643 * 239.99862 * 3 2 1 7 7 C 1.37874 * 120.00382 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99822 * 173.88913 * 7 2 1 9 9 C 1.50704 * 120.00006 * 353.88870 * 7 2 1 10 10 H 1.09001 * 109.43463 * 326.73007 * 9 7 2 11 11 C 1.53036 * 109.43910 * 86.65070 * 9 7 2 12 12 C 1.53384 * 107.92509 * 167.38488 * 11 9 7 13 13 N 1.46427 * 108.63868 * 291.71264 * 12 11 9 14 14 C 1.39580 * 113.11820 * 53.28174 * 13 12 11 15 15 C 1.39801 * 117.65128 * 160.15165 * 14 13 12 16 16 F 1.35103 * 119.80893 * 359.73065 * 15 14 13 17 17 C 1.37964 * 120.38502 * 179.70511 * 15 14 13 18 18 C 1.38339 * 119.92224 * 0.02562 * 17 15 14 19 19 C 1.38006 * 119.90036 * 0.11241 * 18 17 15 20 20 C 1.38207 * 122.95180 * 340.03484 * 14 13 12 21 21 H 0.97003 * 119.99731 * 174.30984 * 1 2 3 22 22 H 1.09004 * 109.77037 * 286.99062 * 11 9 7 23 23 H 1.09000 * 109.77102 * 47.72357 * 11 9 7 24 24 H 1.09009 * 109.60574 * 51.45456 * 12 11 9 25 25 H 1.08998 * 109.60890 * 171.79130 * 12 11 9 26 26 H 1.00900 * 111.00073 * 287.75122 * 13 12 11 27 27 H 1.08002 * 120.03821 * 179.97438 * 17 15 14 28 28 H 1.08007 * 120.04776 * 180.14128 * 18 17 15 29 29 H 1.08004 * 119.73416 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1028 1.6965 1.2126 6 1 3.1029 1.6966 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0800 -1.1965 -0.1001 9 6 1.2576 -2.4955 0.1378 10 1 0.3876 -2.3481 0.7778 11 6 0.7995 -2.9692 -1.2434 12 6 0.3331 -4.4245 -1.1127 13 7 1.4978 -5.2655 -0.8291 14 6 2.2394 -4.8228 0.2674 15 6 3.0929 -5.7407 0.8866 16 9 3.1706 -7.0062 0.4199 17 6 3.8567 -5.3617 1.9713 18 6 3.7789 -4.0665 2.4512 19 6 2.9357 -3.1577 1.8449 20 6 2.1641 -3.5314 0.7539 21 1 -0.4850 -0.8360 -0.0833 22 1 -0.0254 -2.3475 -1.5915 23 1 1.6292 -2.9089 -1.9478 24 1 -0.3849 -4.5066 -0.2966 25 1 -0.1339 -4.7441 -2.0443 26 1 2.0823 -5.3612 -1.6459 27 1 4.5138 -6.0755 2.4456 28 1 4.3776 -3.7670 3.2987 29 1 2.8768 -2.1473 2.2221 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083966616.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:00 Heat of formation + Delta-G solvation = -50.149154 kcal Electronic energy + Delta-G solvation = -14928.398478 eV Core-core repulsion = 12343.128771 eV Total energy + Delta-G solvation = -2585.269707 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.72559 -41.07323 -37.53135 -35.90609 -32.88400 -31.35764 -29.98829 -27.24091 -24.74123 -24.09751 -22.94479 -21.00458 -19.18092 -18.12085 -17.74837 -17.33381 -16.54155 -16.08871 -15.81209 -15.65675 -15.04939 -14.76651 -14.34722 -14.02165 -13.42152 -13.04599 -12.99857 -12.80443 -12.63448 -12.61497 -11.96687 -11.82531 -11.45810 -11.01304 -10.65016 -10.27034 -9.50623 -8.92735 -8.60234 -6.34616 0.28567 0.36225 1.53927 1.59630 1.79330 2.54451 2.71422 2.95318 3.14953 3.40384 3.89882 4.02390 4.12804 4.21329 4.35048 4.45733 4.49540 4.65833 4.85653 4.88499 5.11910 5.20996 5.24639 5.30603 5.45736 5.74998 5.84852 6.01518 6.11353 6.19956 6.31465 6.60989 7.42926 8.76035 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.035703 B = 0.009821 C = 0.008131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.059673 B = 2850.472550 C = 3442.727174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.024 4.024 3 Si 1.108 2.892 4 H -0.286 1.286 5 H -0.269 1.269 6 H -0.274 1.274 7 C -0.590 4.590 8 H 0.044 0.956 9 C 0.061 3.939 10 H 0.015 0.985 11 C -0.137 4.137 12 C 0.066 3.934 13 N -0.631 5.631 14 C 0.052 3.948 15 C 0.068 3.932 16 F -0.141 7.141 17 C -0.147 4.147 18 C -0.106 4.106 19 C -0.112 4.112 20 C -0.084 4.084 21 H 0.260 0.740 22 H 0.047 0.953 23 H 0.047 0.953 24 H 0.063 0.937 25 H 0.104 0.896 26 H 0.359 0.641 27 H 0.164 0.836 28 H 0.162 0.838 29 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.311 -8.338 1.614 10.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.223 4.223 3 Si 0.931 3.069 4 H -0.212 1.212 5 H -0.194 1.194 6 H -0.200 1.200 7 C -0.628 4.628 8 H 0.063 0.937 9 C 0.042 3.958 10 H 0.033 0.967 11 C -0.177 4.177 12 C -0.063 4.063 13 N -0.259 5.259 14 C -0.046 4.046 15 C 0.047 3.953 16 F -0.120 7.120 17 C -0.166 4.166 18 C -0.125 4.125 19 C -0.131 4.131 20 C -0.087 4.087 21 H 0.070 0.930 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.082 0.918 25 H 0.122 0.878 26 H 0.185 0.815 27 H 0.181 0.819 28 H 0.179 0.821 29 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.733 -7.223 1.960 9.428 hybrid contribution 0.143 -0.937 -0.687 1.170 sum 5.876 -8.160 1.272 10.136 Atomic orbital electron populations 1.70910 1.07846 1.30374 1.48050 1.27121 0.96475 1.05946 0.92760 0.83033 0.74223 0.71790 0.77875 1.21201 1.19425 1.19973 1.22056 0.94296 0.92025 1.54438 0.93736 1.17899 0.93297 0.92257 0.92314 0.96673 1.22287 0.99830 0.96564 0.99021 1.22104 0.91656 0.90099 1.02419 1.57138 1.10647 1.50802 1.07354 1.18643 0.97368 0.91268 0.97331 1.17727 1.01476 0.78890 0.97179 1.91420 1.95486 1.36769 1.88323 1.21205 1.00961 0.98302 0.96123 1.21221 0.98633 0.91982 1.00628 1.21310 0.96186 1.00241 0.95396 1.20428 0.98878 0.92023 0.97376 0.92985 0.93429 0.93419 0.91813 0.87824 0.81496 0.81859 0.82086 0.86401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.00 13.56 21.45 0.29 -54.71 15 2 C -0.02 -1.33 5.45 84.65 0.46 -0.87 15 3 Si 1.11 48.50 29.91 68.60 2.05 50.55 15 4 H -0.29 -12.67 7.11 99.48 0.71 -11.97 15 5 H -0.27 -10.92 7.11 99.48 0.71 -10.21 15 6 H -0.27 -11.30 7.11 99.48 0.71 -10.60 15 7 C -0.59 -31.66 7.08 25.60 0.18 -31.48 15 8 H 0.04 2.41 7.74 -2.91 -0.02 2.38 15 9 C 0.06 2.99 1.86 -12.24 -0.02 2.97 15 10 H 0.02 0.84 7.05 -2.39 -0.02 0.83 15 11 C -0.14 -5.99 5.41 30.74 0.17 -5.82 15 12 C 0.07 2.34 6.61 86.52 0.57 2.91 15 13 N -0.63 -22.26 6.24 -338.84 -2.11 -24.37 15 14 C 0.05 2.03 6.13 38.28 0.23 2.27 15 15 C 0.07 2.36 7.29 22.58 0.16 2.52 15 16 F -0.14 -4.72 16.96 44.97 0.76 -3.95 15 17 C -0.15 -4.28 10.01 22.23 0.22 -4.05 15 18 C -0.11 -3.22 10.05 22.24 0.22 -2.99 15 19 C -0.11 -4.42 9.02 22.34 0.20 -4.22 15 20 C -0.08 -3.64 5.40 -19.71 -0.11 -3.75 15 21 H 0.26 15.36 6.20 -92.71 -0.57 14.78 15 22 H 0.05 2.20 7.47 -2.38 -0.02 2.18 15 23 H 0.05 2.10 8.09 -2.39 -0.02 2.08 15 24 H 0.06 2.38 8.11 -2.38 -0.02 2.36 15 25 H 0.10 3.02 8.14 -2.39 -0.02 3.00 15 26 H 0.36 11.37 8.84 -89.69 -0.79 10.58 15 27 H 0.16 3.52 8.06 -2.91 -0.02 3.50 15 28 H 0.16 3.62 8.06 -2.91 -0.02 3.59 15 29 H 0.12 4.93 7.40 -2.91 -0.02 4.91 15 Total: -1.00 -61.45 247.44 3.86 -57.59 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.57 Total: 17.41 kcal Atomic # 6 Polarization: -44.82 SS G_CDS: 2.30 Total: -42.52 kcal Atomic # 7 Polarization: -77.26 SS G_CDS: -1.82 Total: -79.08 kcal Atomic # 9 Polarization: -4.72 SS G_CDS: 0.76 Total: -3.95 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 2.05 Total: 50.55 kcal Total: -61.45 3.86 -57.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083966616.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.441 kcal (2) G-P(sol) polarization free energy of solvation -61.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds