Wall clock time and date at job start Mon Mar 30 2020 02:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00167 * 2 1 4 4 H 1.48494 * 109.47559 * 269.72984 * 3 2 1 5 5 H 1.48499 * 109.47119 * 29.72889 * 3 2 1 6 6 H 1.48508 * 109.47056 * 149.72671 * 3 2 1 7 7 C 1.37878 * 119.99513 * 179.73078 * 2 1 3 8 8 H 1.08001 * 119.99441 * 174.46085 * 7 2 1 9 9 C 1.50700 * 120.00180 * 354.46028 * 7 2 1 10 10 H 1.08995 * 109.43631 * 25.01613 * 9 7 2 11 11 C 1.53037 * 109.43310 * 265.14635 * 9 7 2 12 12 C 1.53375 * 107.95157 * 192.64453 * 11 9 7 13 13 N 1.46433 * 108.63241 * 68.23504 * 12 11 9 14 14 C 1.39579 * 113.09354 * 306.57856 * 13 12 11 15 15 C 1.39802 * 117.64980 * 199.88049 * 14 13 12 16 16 F 1.35099 * 119.81194 * 0.64733 * 15 14 13 17 17 C 1.37971 * 120.37775 * 180.62923 * 15 14 13 18 18 C 1.38332 * 119.91836 * 0.02562 * 17 15 14 19 19 C 1.38010 * 119.91116 * 359.86596 * 18 17 15 20 20 C 1.38278 * 122.95412 * 20.29696 * 14 13 12 21 21 H 0.97002 * 119.99935 * 0.27054 * 1 2 3 22 22 H 1.09004 * 109.76703 * 312.26358 * 11 9 7 23 23 H 1.09001 * 109.76445 * 73.03312 * 11 9 7 24 24 H 1.09002 * 109.61846 * 308.49103 * 12 11 9 25 25 H 1.08999 * 109.61240 * 187.97257 * 12 11 9 26 26 H 1.00893 * 111.00444 * 72.10101 * 13 12 11 27 27 H 1.08001 * 120.03895 * 179.97438 * 17 15 14 28 28 H 1.08003 * 120.04442 * 179.89225 * 18 17 15 29 29 H 1.08002 * 119.73792 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5024 2.0431 -1.4000 5 1 1.4438 2.6542 0.6943 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0056 8 1 3.0807 -1.1967 -0.0847 9 6 1.2562 -2.4955 0.1377 10 1 0.2350 -2.3647 -0.2202 11 6 1.2291 -2.9203 1.6077 12 6 0.7527 -4.3769 1.6701 13 7 1.7855 -5.2325 1.0824 14 6 2.1638 -4.8320 -0.2000 15 6 2.7995 -5.7749 -1.0131 16 9 3.0137 -7.0258 -0.5498 17 6 3.2090 -5.4355 -2.2862 18 6 2.9910 -4.1553 -2.7628 19 6 2.3618 -3.2217 -1.9645 20 6 1.9443 -3.5557 -0.6848 21 1 -0.4850 0.8401 -0.0040 22 1 2.2297 -2.8411 2.0328 23 1 0.5406 -2.2832 2.1629 24 1 -0.1745 -4.4831 1.1069 25 1 0.5876 -4.6636 2.7087 26 1 2.5873 -5.3015 1.6909 27 1 3.7000 -6.1682 -2.9095 28 1 3.3123 -3.8870 -3.7584 29 1 2.1926 -2.2231 -2.3396 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083966618.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:03 Heat of formation + Delta-G solvation = -30.916327 kcal Electronic energy + Delta-G solvation = -14882.541747 eV Core-core repulsion = 12298.106039 eV Total energy + Delta-G solvation = -2584.435709 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.21185 -39.38025 -35.88584 -33.72939 -31.22201 -29.72931 -28.44215 -25.69862 -22.95443 -22.45459 -21.21221 -19.18871 -17.03599 -16.28869 -16.16769 -15.76169 -15.00369 -14.63568 -14.27784 -13.83442 -13.18560 -12.95027 -12.69645 -12.23629 -11.86228 -11.56715 -11.23736 -11.12263 -11.02449 -10.74749 -10.41374 -10.04737 -9.67290 -9.28771 -8.76519 -8.64781 -7.83946 -7.32237 -6.17513 -4.21183 1.86155 1.94173 3.21440 3.29412 3.33036 4.24320 4.35742 4.51092 4.93992 5.12844 5.39071 5.63936 5.80267 5.83189 5.93963 6.11391 6.14500 6.24993 6.63558 6.67260 6.79783 6.90624 7.04020 7.07852 7.32396 7.53410 7.57880 7.71115 7.76275 7.92014 8.22166 8.86602 9.42507 10.90948 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.035848 B = 0.009674 C = 0.008173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.890238 B = 2893.752275 C = 3425.267119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.893 3.107 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.510 4.510 8 H 0.057 0.943 9 C 0.066 3.934 10 H 0.079 0.921 11 C -0.141 4.141 12 C 0.055 3.945 13 N -0.637 5.637 14 C 0.061 3.939 15 C 0.075 3.925 16 F -0.146 7.146 17 C -0.167 4.167 18 C -0.122 4.122 19 C -0.094 4.094 20 C -0.053 4.053 21 H 0.264 0.736 22 H 0.049 0.951 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.347 0.653 27 H 0.123 0.877 28 H 0.121 0.879 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.542 -6.609 -1.021 7.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.720 3.280 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.548 4.548 8 H 0.075 0.925 9 C 0.048 3.952 10 H 0.096 0.904 11 C -0.180 4.180 12 C -0.073 4.073 13 N -0.265 5.265 14 C -0.037 4.037 15 C 0.054 3.946 16 F -0.125 7.125 17 C -0.186 4.186 18 C -0.141 4.141 19 C -0.113 4.113 20 C -0.056 4.056 21 H 0.074 0.926 22 H 0.067 0.933 23 H 0.085 0.915 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.172 0.828 27 H 0.141 0.859 28 H 0.139 0.861 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.932 -6.993 -1.143 7.669 hybrid contribution 0.976 1.427 0.275 1.751 sum 3.908 -5.567 -0.868 6.857 Atomic orbital electron populations 1.69900 1.05987 1.27030 1.49831 1.24987 0.94859 0.99315 0.94422 0.86576 0.79925 0.83158 0.78308 1.20479 1.21099 1.19785 1.20943 0.93212 0.89567 1.51034 0.92490 1.18049 0.97975 0.90200 0.89016 0.90350 1.22376 1.00265 0.94348 1.01014 1.22198 0.94383 0.92276 0.98492 1.57092 1.14844 1.52496 1.02065 1.18569 1.01212 0.91709 0.92256 1.17600 1.04301 0.79370 0.93336 1.91400 1.93276 1.38564 1.89222 1.20740 1.05112 0.98196 0.94595 1.20877 1.00649 0.92715 0.99848 1.21268 0.96868 0.99842 0.93335 1.20838 0.96811 0.91948 0.96018 0.92617 0.93252 0.91513 0.90867 0.91320 0.82759 0.85945 0.86139 0.84764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.43 12.77 55.43 0.71 -23.72 15 2 C 0.07 1.75 5.45 -17.82 -0.10 1.66 15 3 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 15 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 15 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 15 7 C -0.51 -13.13 7.03 -34.44 -0.24 -13.37 15 8 H 0.06 1.49 7.82 -52.49 -0.41 1.07 15 9 C 0.07 1.56 2.41 -92.86 -0.22 1.34 15 10 H 0.08 2.08 7.23 -51.93 -0.38 1.71 15 11 C -0.14 -2.96 5.48 -26.52 -0.15 -3.11 15 12 C 0.05 0.99 6.61 -3.88 -0.03 0.97 15 13 N -0.64 -11.68 6.24 -58.43 -0.36 -12.04 15 14 C 0.06 1.22 6.13 -83.73 -0.51 0.71 15 15 C 0.08 1.41 7.29 -39.09 -0.29 1.12 15 16 F -0.15 -2.69 16.96 2.25 0.04 -2.65 15 17 C -0.17 -2.82 10.01 -39.64 -0.40 -3.21 15 18 C -0.12 -2.08 10.05 -39.63 -0.40 -2.48 15 19 C -0.09 -1.90 9.07 -39.50 -0.36 -2.26 15 20 C -0.05 -1.15 5.40 -104.39 -0.56 -1.71 15 21 H 0.26 6.92 8.31 -40.82 -0.34 6.58 15 22 H 0.05 1.04 8.09 -51.93 -0.42 0.62 15 23 H 0.07 1.47 8.14 -51.93 -0.42 1.04 15 24 H 0.07 1.38 8.11 -51.93 -0.42 0.96 15 25 H 0.07 1.06 8.14 -51.93 -0.42 0.63 15 26 H 0.35 5.78 8.84 -39.30 -0.35 5.44 15 27 H 0.12 1.72 8.06 -52.49 -0.42 1.30 15 28 H 0.12 1.68 8.06 -52.48 -0.42 1.26 15 29 H 0.13 2.81 7.39 -52.49 -0.39 2.42 15 LS Contribution 249.95 15.07 3.77 3.77 Total: -1.00 -27.11 249.95 -7.31 -34.42 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -3.19 Total: 5.23 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: -3.25 Total: -20.35 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.34 Total: -35.76 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.04 Total: -2.65 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -27.11 -7.31 -34.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083966618.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.506 kcal (2) G-P(sol) polarization free energy of solvation -27.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds