Wall clock time and date at job start Mon Mar 30 2020 02:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00167 * 2 1 4 4 H 1.48494 * 109.47559 * 269.72984 * 3 2 1 5 5 H 1.48499 * 109.47119 * 29.72889 * 3 2 1 6 6 H 1.48508 * 109.47056 * 149.72671 * 3 2 1 7 7 C 1.37878 * 119.99513 * 179.73078 * 2 1 3 8 8 H 1.08001 * 119.99441 * 174.46085 * 7 2 1 9 9 C 1.50700 * 120.00180 * 354.46028 * 7 2 1 10 10 H 1.08995 * 109.43631 * 25.01613 * 9 7 2 11 11 C 1.53037 * 109.43310 * 265.14635 * 9 7 2 12 12 C 1.53375 * 107.95157 * 192.64453 * 11 9 7 13 13 N 1.46433 * 108.63241 * 68.23504 * 12 11 9 14 14 C 1.39579 * 113.09354 * 306.57856 * 13 12 11 15 15 C 1.39802 * 117.64980 * 199.88049 * 14 13 12 16 16 F 1.35099 * 119.81194 * 0.64733 * 15 14 13 17 17 C 1.37971 * 120.37775 * 180.62923 * 15 14 13 18 18 C 1.38332 * 119.91836 * 0.02562 * 17 15 14 19 19 C 1.38010 * 119.91116 * 359.86596 * 18 17 15 20 20 C 1.38278 * 122.95412 * 20.29696 * 14 13 12 21 21 H 0.97002 * 119.99935 * 0.27054 * 1 2 3 22 22 H 1.09004 * 109.76703 * 312.26358 * 11 9 7 23 23 H 1.09001 * 109.76445 * 73.03312 * 11 9 7 24 24 H 1.09002 * 109.61846 * 308.49103 * 12 11 9 25 25 H 1.08999 * 109.61240 * 187.97257 * 12 11 9 26 26 H 1.00893 * 111.00444 * 72.10101 * 13 12 11 27 27 H 1.08001 * 120.03895 * 179.97438 * 17 15 14 28 28 H 1.08003 * 120.04442 * 179.89225 * 18 17 15 29 29 H 1.08002 * 119.73792 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5024 2.0431 -1.4000 5 1 1.4438 2.6542 0.6943 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0056 8 1 3.0807 -1.1967 -0.0847 9 6 1.2562 -2.4955 0.1377 10 1 0.2350 -2.3647 -0.2202 11 6 1.2291 -2.9203 1.6077 12 6 0.7527 -4.3769 1.6701 13 7 1.7855 -5.2325 1.0824 14 6 2.1638 -4.8320 -0.2000 15 6 2.7995 -5.7749 -1.0131 16 9 3.0137 -7.0258 -0.5498 17 6 3.2090 -5.4355 -2.2862 18 6 2.9910 -4.1553 -2.7628 19 6 2.3618 -3.2217 -1.9645 20 6 1.9443 -3.5557 -0.6848 21 1 -0.4850 0.8401 -0.0040 22 1 2.2297 -2.8411 2.0328 23 1 0.5406 -2.2832 2.1629 24 1 -0.1745 -4.4831 1.1069 25 1 0.5876 -4.6636 2.7087 26 1 2.5873 -5.3015 1.6909 27 1 3.7000 -6.1682 -2.9095 28 1 3.3123 -3.8870 -3.7584 29 1 2.1926 -2.2231 -2.3396 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083966618.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:02 Heat of formation + Delta-G solvation = -46.315765 kcal Electronic energy + Delta-G solvation = -14883.209517 eV Core-core repulsion = 12298.106039 eV Total energy + Delta-G solvation = -2585.103478 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.65751 -40.92759 -37.38191 -35.56264 -33.03870 -31.23769 -29.97513 -27.55378 -24.62898 -23.99469 -22.79142 -20.79602 -18.73413 -18.10783 -17.66236 -17.22729 -16.49655 -16.46115 -15.71804 -15.43842 -14.79141 -14.60726 -14.29607 -13.96679 -13.40079 -13.15066 -12.86592 -12.77289 -12.63491 -12.52971 -12.23449 -11.69707 -11.42799 -11.09249 -10.64140 -10.36206 -9.40203 -8.82690 -8.17714 -6.27171 0.37173 0.46070 1.39474 1.41882 1.51450 2.39353 2.80277 3.04352 3.13036 3.49022 4.00873 4.14643 4.26609 4.34096 4.48896 4.55559 4.61589 4.76772 5.02241 5.08410 5.24434 5.34341 5.41560 5.51059 5.56647 5.73322 5.86850 6.00271 6.18713 6.29601 6.42714 6.85364 7.38793 8.90397 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.035848 B = 0.009674 C = 0.008173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.890238 B = 2893.752275 C = 3425.267119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.019 3.981 3 Si 0.953 3.047 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.515 4.515 8 H 0.049 0.951 9 C 0.065 3.935 10 H 0.038 0.962 11 C -0.133 4.133 12 C 0.066 3.934 13 N -0.632 5.632 14 C 0.051 3.949 15 C 0.067 3.933 16 F -0.143 7.143 17 C -0.151 4.151 18 C -0.108 4.108 19 C -0.112 4.112 20 C -0.083 4.083 21 H 0.264 0.736 22 H 0.048 0.952 23 H 0.049 0.951 24 H 0.062 0.938 25 H 0.102 0.898 26 H 0.358 0.642 27 H 0.161 0.839 28 H 0.158 0.842 29 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.032 -7.779 -1.613 9.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.180 4.180 3 Si 0.778 3.222 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.553 4.553 8 H 0.068 0.932 9 C 0.046 3.954 10 H 0.056 0.944 11 C -0.173 4.173 12 C -0.063 4.063 13 N -0.261 5.261 14 C -0.047 4.047 15 C 0.046 3.954 16 F -0.121 7.121 17 C -0.170 4.170 18 C -0.127 4.127 19 C -0.131 4.131 20 C -0.086 4.086 21 H 0.073 0.927 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.080 0.920 25 H 0.121 0.879 26 H 0.185 0.815 27 H 0.179 0.821 28 H 0.176 0.824 29 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.437 -8.177 -1.732 9.463 hybrid contribution 0.542 1.707 0.404 1.836 sum 4.979 -6.470 -1.328 8.271 Atomic orbital electron populations 1.70025 1.07333 1.27622 1.51312 1.25695 0.95536 1.02381 0.94389 0.85630 0.78685 0.79385 0.78454 1.19830 1.20950 1.19405 1.21164 0.92921 0.90897 1.50287 0.93229 1.17882 0.95851 0.90704 0.90914 0.94375 1.22214 0.99819 0.96286 0.98963 1.22105 0.93763 0.90104 1.00285 1.57134 1.15304 1.51832 1.01838 1.18668 1.01480 0.91442 0.93116 1.17743 1.04404 0.79266 0.93985 1.91410 1.93223 1.38184 1.89312 1.21158 1.03295 0.98609 0.93910 1.21192 0.98737 0.91970 1.00779 1.21271 0.98209 1.00035 0.93583 1.20664 0.98781 0.92355 0.96773 0.92708 0.93347 0.93259 0.91977 0.87933 0.81546 0.82144 0.82426 0.86603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.46 12.77 21.45 0.27 -52.19 15 2 C 0.02 1.02 5.45 84.65 0.46 1.48 15 3 Si 0.95 42.34 29.54 68.60 2.03 44.36 15 4 H -0.27 -11.76 7.11 99.48 0.71 -11.06 15 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 15 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 15 7 C -0.51 -27.27 7.03 25.60 0.18 -27.09 15 8 H 0.05 2.64 7.82 -2.91 -0.02 2.62 15 9 C 0.06 3.19 2.41 -12.24 -0.03 3.16 15 10 H 0.04 2.15 7.23 -2.39 -0.02 2.14 15 11 C -0.13 -5.73 5.48 30.73 0.17 -5.56 15 12 C 0.07 2.34 6.61 86.52 0.57 2.91 15 13 N -0.63 -22.31 6.24 -338.79 -2.11 -24.43 15 14 C 0.05 2.01 6.13 38.30 0.23 2.24 15 15 C 0.07 2.35 7.29 22.58 0.16 2.51 15 16 F -0.14 -4.83 16.96 44.97 0.76 -4.06 15 17 C -0.15 -4.50 10.01 22.23 0.22 -4.28 15 18 C -0.11 -3.38 10.05 22.24 0.22 -3.15 15 19 C -0.11 -4.49 9.07 22.32 0.20 -4.28 15 20 C -0.08 -3.60 5.40 -19.71 -0.11 -3.71 15 21 H 0.26 14.24 8.31 -92.71 -0.77 13.47 15 22 H 0.05 2.05 8.09 -2.39 -0.02 2.03 15 23 H 0.05 2.24 8.14 -2.39 -0.02 2.22 15 24 H 0.06 2.35 8.11 -2.39 -0.02 2.33 15 25 H 0.10 2.95 8.14 -2.39 -0.02 2.93 15 26 H 0.36 11.26 8.84 -89.70 -0.79 10.47 15 27 H 0.16 3.61 8.06 -2.91 -0.02 3.59 15 28 H 0.16 3.72 8.06 -2.91 -0.02 3.69 15 29 H 0.12 4.98 7.39 -2.91 -0.02 4.96 15 Total: -1.00 -59.05 249.95 3.61 -55.44 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.37 Total: 16.64 kcal Atomic # 6 Polarization: -38.05 SS G_CDS: 2.29 Total: -35.76 kcal Atomic # 7 Polarization: -74.78 SS G_CDS: -1.84 Total: -76.62 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 0.76 Total: -4.06 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -59.05 3.61 -55.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083966618.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.120 kcal (2) G-P(sol) polarization free energy of solvation -59.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds