Wall clock time and date at job start Mon Mar 30 2020 02:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00081 * 2 1 4 4 H 1.48498 * 109.47191 * 359.97438 * 3 2 1 5 5 H 1.48507 * 109.47099 * 120.00105 * 3 2 1 6 6 H 1.48499 * 109.47137 * 239.99702 * 3 2 1 7 7 C 1.37880 * 119.99586 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99867 * 174.27833 * 7 2 1 9 9 C 1.50695 * 119.99893 * 354.28619 * 7 2 1 10 10 N 1.46902 * 110.27402 * 56.98704 * 9 7 2 11 11 C 1.54342 * 110.30643 * 294.90776 * 9 7 2 12 12 C 1.54339 * 102.39741 * 214.72425 * 11 9 7 13 13 C 1.51383 * 105.17226 * 26.35751 * 12 11 9 14 14 C 1.38511 * 130.36170 * 162.78949 * 13 12 11 15 15 C 1.38063 * 120.25098 * 180.02562 * 14 13 12 16 16 C 1.38476 * 119.91014 * 359.97438 * 15 14 13 17 17 F 1.35104 * 120.06180 * 179.97438 * 16 15 14 18 18 C 1.38326 * 119.87879 * 0.02562 * 16 15 14 19 19 C 1.38234 * 109.74840 * 342.80329 * 13 12 11 20 20 H 0.97007 * 119.99760 * 0.02562 * 1 2 3 21 21 H 1.00899 * 110.99798 * 59.28976 * 10 9 7 22 22 H 1.00888 * 111.00166 * 183.25007 * 10 9 7 23 23 H 1.09002 * 110.81653 * 332.95031 * 11 9 7 24 24 H 1.08995 * 110.82038 * 96.49106 * 11 9 7 25 25 H 1.08999 * 110.30546 * 145.27582 * 12 11 9 26 26 H 1.09001 * 110.30221 * 267.43202 * 12 11 9 27 27 H 1.07996 * 119.87660 * 0.03880 * 14 13 12 28 28 H 1.07997 * 120.05011 * 179.97438 * 15 14 13 29 29 H 1.07999 * 119.90622 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0804 -1.1966 -0.0927 9 6 1.2565 -2.4958 0.1310 10 7 0.2556 -2.6171 -0.9374 11 6 0.5772 -2.5869 1.5140 12 6 0.6814 -4.0928 1.8357 13 6 1.8899 -4.5799 1.0651 14 6 2.6407 -5.7348 1.2105 15 6 3.7181 -5.9730 0.3807 16 6 4.0498 -5.0546 -0.6012 17 9 5.1039 -5.2843 -1.4145 18 6 3.3006 -3.9010 -0.7470 19 6 2.2203 -3.6622 0.0856 20 1 -0.4850 0.8401 -0.0004 21 1 0.6914 -2.5813 -1.8468 22 1 -0.2878 -3.4603 -0.8298 23 1 1.1190 -1.9947 2.2514 24 1 -0.4653 -2.2745 1.4548 25 1 0.8297 -4.2417 2.9053 26 1 -0.2157 -4.6139 1.5013 27 1 2.3822 -6.4518 1.9756 28 1 4.3015 -6.8744 0.4971 29 1 3.5587 -3.1846 -1.5129 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084349976.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:11 Heat of formation + Delta-G solvation = -20.614187 kcal Electronic energy + Delta-G solvation = -14897.499364 eV Core-core repulsion = 12313.510390 eV Total energy + Delta-G solvation = -2583.988974 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.45583 -39.49663 -35.50414 -32.44403 -31.19205 -29.69528 -27.77338 -26.23194 -23.58618 -22.20657 -20.45927 -19.38965 -16.74940 -16.32119 -15.59096 -15.14266 -14.89469 -14.57744 -14.31614 -13.77600 -13.13850 -13.09783 -12.58378 -12.40487 -11.61638 -11.32839 -11.22143 -10.87094 -10.68000 -10.61494 -10.41653 -9.95343 -9.83865 -8.95937 -8.46163 -8.37418 -7.88996 -7.09934 -5.87363 -4.03604 1.68031 1.80144 3.33777 3.38773 3.42192 4.12568 4.46662 4.70173 5.03614 5.32352 5.36469 5.43517 5.74211 5.90410 6.01925 6.04020 6.18386 6.31267 6.58117 6.60385 6.64998 6.68722 7.07533 7.18599 7.28654 7.47102 7.55407 7.89592 8.18827 8.58648 8.95100 9.10891 9.64038 11.13548 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.031184 B = 0.010304 C = 0.008605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.680830 B = 2716.698168 C = 3253.037543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.087 3.913 3 Si 0.880 3.120 4 H -0.288 1.288 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.534 4.534 8 H 0.054 0.946 9 C 0.284 3.716 10 N -0.792 5.792 11 C -0.088 4.088 12 C -0.089 4.089 13 C -0.113 4.113 14 C -0.091 4.091 15 C -0.172 4.172 16 C 0.081 3.919 17 F -0.150 7.150 18 C -0.134 4.134 19 C -0.061 4.061 20 H 0.255 0.745 21 H 0.322 0.678 22 H 0.297 0.703 23 H 0.063 0.937 24 H 0.080 0.920 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.119 0.881 28 H 0.125 0.875 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.476 -8.799 1.689 9.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.121 4.121 3 Si 0.707 3.293 4 H -0.213 1.213 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.572 4.572 8 H 0.072 0.928 9 C 0.192 3.808 10 N -0.317 5.317 11 C -0.127 4.127 12 C -0.126 4.126 13 C -0.114 4.114 14 C -0.110 4.110 15 C -0.191 4.191 16 C 0.062 3.938 17 F -0.129 7.129 18 C -0.153 4.153 19 C -0.064 4.064 20 H 0.065 0.935 21 H 0.134 0.866 22 H 0.107 0.893 23 H 0.082 0.918 24 H 0.099 0.901 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.137 0.863 28 H 0.143 0.857 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.989 -7.974 1.943 8.445 hybrid contribution 1.410 -0.091 -0.438 1.479 sum 3.398 -8.065 1.505 8.880 Atomic orbital electron populations 1.70165 1.05404 1.25502 1.45901 1.24913 0.94647 0.98304 0.94196 0.86892 0.79858 0.83917 0.78597 1.21343 1.20358 1.20418 1.20755 0.92442 0.89398 1.54645 0.92751 1.18035 0.84711 0.88704 0.89301 1.59192 1.27249 1.40688 1.04545 1.22263 1.02204 0.90477 0.97753 1.21267 0.93984 0.99155 0.98229 1.20930 0.97918 0.94311 0.98267 1.20373 0.94756 0.96849 0.98974 1.20776 1.00442 1.00095 0.97759 1.17628 0.87290 0.96551 0.92369 1.91434 1.55032 1.94794 1.71644 1.20691 0.96191 0.96102 1.02358 1.22279 0.94199 0.98171 0.91730 0.93544 0.86630 0.89251 0.91801 0.90130 0.92009 0.91365 0.86257 0.85719 0.85215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.86 12.08 55.43 0.67 -22.19 15 2 C 0.09 2.31 5.26 -17.82 -0.09 2.22 15 3 Si 0.88 20.76 29.54 -169.99 -5.02 15.74 15 4 H -0.29 -6.77 7.11 56.52 0.40 -6.36 15 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 7 C -0.53 -14.01 7.95 -34.44 -0.27 -14.28 15 8 H 0.05 1.46 7.57 -52.49 -0.40 1.06 15 9 C 0.28 6.55 0.64 -132.87 -0.08 6.46 15 10 N -0.79 -17.80 7.97 -0.29 0.00 -17.80 15 11 C -0.09 -1.93 5.58 -25.33 -0.14 -2.07 15 12 C -0.09 -1.58 6.77 -26.85 -0.18 -1.77 15 13 C -0.11 -2.11 6.14 -104.19 -0.64 -2.74 15 14 C -0.09 -1.47 10.04 -39.54 -0.40 -1.87 15 15 C -0.17 -2.76 10.03 -39.56 -0.40 -3.16 15 16 C 0.08 1.47 7.30 -39.46 -0.29 1.18 15 17 F -0.15 -2.67 17.27 2.25 0.04 -2.63 15 18 C -0.13 -2.68 9.59 -39.46 -0.38 -3.06 15 19 C -0.06 -1.27 5.19 -104.21 -0.54 -1.81 15 20 H 0.25 6.77 8.31 -40.82 -0.34 6.43 15 21 H 0.32 7.13 9.03 -39.29 -0.35 6.78 15 22 H 0.30 6.01 8.98 -39.30 -0.35 5.66 15 23 H 0.06 1.47 7.91 -51.93 -0.41 1.06 15 24 H 0.08 1.86 8.06 -51.93 -0.42 1.44 15 25 H 0.06 0.98 8.14 -51.93 -0.42 0.55 15 26 H 0.07 1.11 8.14 -51.93 -0.42 0.69 15 27 H 0.12 1.56 8.06 -52.49 -0.42 1.13 15 28 H 0.12 1.66 8.06 -52.49 -0.42 1.23 15 29 H 0.13 2.61 8.06 -52.49 -0.42 2.19 15 LS Contribution 252.95 15.07 3.81 3.81 Total: -1.00 -27.35 252.95 -7.10 -34.45 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -3.18 Total: 9.52 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -3.42 Total: -20.90 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 0.67 Total: -39.99 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.04 Total: -2.63 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -27.35 -7.10 -34.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084349976.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.838 kcal (2) G-P(sol) polarization free energy of solvation -27.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds