Wall clock time and date at job start Mon Mar 30 2020 02:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00081 * 2 1 4 4 H 1.48498 * 109.47191 * 359.97438 * 3 2 1 5 5 H 1.48507 * 109.47099 * 120.00105 * 3 2 1 6 6 H 1.48499 * 109.47137 * 239.99702 * 3 2 1 7 7 C 1.37880 * 119.99586 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99867 * 174.27833 * 7 2 1 9 9 C 1.50695 * 119.99893 * 354.28619 * 7 2 1 10 10 N 1.46902 * 110.27402 * 56.98704 * 9 7 2 11 11 C 1.54342 * 110.30643 * 294.90776 * 9 7 2 12 12 C 1.54339 * 102.39741 * 214.72425 * 11 9 7 13 13 C 1.51383 * 105.17226 * 26.35751 * 12 11 9 14 14 C 1.38511 * 130.36170 * 162.78949 * 13 12 11 15 15 C 1.38063 * 120.25098 * 180.02562 * 14 13 12 16 16 C 1.38476 * 119.91014 * 359.97438 * 15 14 13 17 17 F 1.35104 * 120.06180 * 179.97438 * 16 15 14 18 18 C 1.38326 * 119.87879 * 0.02562 * 16 15 14 19 19 C 1.38234 * 109.74840 * 342.80329 * 13 12 11 20 20 H 0.97007 * 119.99760 * 0.02562 * 1 2 3 21 21 H 1.00899 * 110.99798 * 59.28976 * 10 9 7 22 22 H 1.00888 * 111.00166 * 183.25007 * 10 9 7 23 23 H 1.09002 * 110.81653 * 332.95031 * 11 9 7 24 24 H 1.08995 * 110.82038 * 96.49106 * 11 9 7 25 25 H 1.08999 * 110.30546 * 145.27582 * 12 11 9 26 26 H 1.09001 * 110.30221 * 267.43202 * 12 11 9 27 27 H 1.07996 * 119.87660 * 0.03880 * 14 13 12 28 28 H 1.07997 * 120.05011 * 179.97438 * 15 14 13 29 29 H 1.07999 * 119.90622 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0804 -1.1966 -0.0927 9 6 1.2565 -2.4958 0.1310 10 7 0.2556 -2.6171 -0.9374 11 6 0.5772 -2.5869 1.5140 12 6 0.6814 -4.0928 1.8357 13 6 1.8899 -4.5799 1.0651 14 6 2.6407 -5.7348 1.2105 15 6 3.7181 -5.9730 0.3807 16 6 4.0498 -5.0546 -0.6012 17 9 5.1039 -5.2843 -1.4145 18 6 3.3006 -3.9010 -0.7470 19 6 2.2203 -3.6622 0.0856 20 1 -0.4850 0.8401 -0.0004 21 1 0.6914 -2.5813 -1.8468 22 1 -0.2878 -3.4603 -0.8298 23 1 1.1190 -1.9947 2.2514 24 1 -0.4653 -2.2745 1.4548 25 1 0.8297 -4.2417 2.9053 26 1 -0.2157 -4.6139 1.5013 27 1 2.3822 -6.4518 1.9756 28 1 4.3015 -6.8744 0.4971 29 1 3.5587 -3.1846 -1.5129 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084349976.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:10 Heat of formation + Delta-G solvation = -37.001067 kcal Electronic energy + Delta-G solvation = -14898.209953 eV Core-core repulsion = 12313.510390 eV Total energy + Delta-G solvation = -2584.699563 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.85421 -40.99365 -37.08404 -34.26440 -32.86535 -31.23747 -29.27724 -28.09278 -25.31156 -23.66654 -21.87463 -21.09625 -18.42860 -17.91158 -17.18218 -16.57156 -16.46488 -16.28515 -16.03633 -15.37506 -14.65892 -14.47262 -14.19867 -14.08676 -13.15601 -13.09283 -12.81818 -12.71133 -12.42247 -12.21222 -12.12284 -11.59842 -11.54669 -10.83951 -10.46654 -9.84318 -9.32985 -8.82056 -7.90210 -6.10945 0.26916 0.41075 1.42459 1.44417 1.50319 2.47826 2.72182 3.28299 3.31593 3.69926 3.92866 4.06798 4.32928 4.40753 4.49859 4.58131 4.68959 4.91470 5.11184 5.15930 5.21342 5.28454 5.46489 5.48790 5.72189 5.80973 5.89854 6.06447 6.29884 6.68067 7.09560 7.32240 7.58795 9.08430 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.031184 B = 0.010304 C = 0.008605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.680830 B = 2716.698168 C = 3253.037543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.047 3.953 3 Si 0.931 3.069 4 H -0.284 1.284 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.547 4.547 8 H 0.037 0.963 9 C 0.275 3.725 10 N -0.802 5.802 11 C -0.086 4.086 12 C -0.077 4.077 13 C -0.118 4.118 14 C -0.078 4.078 15 C -0.156 4.156 16 C 0.072 3.928 17 F -0.150 7.150 18 C -0.153 4.153 19 C -0.089 4.089 20 H 0.252 0.748 21 H 0.319 0.681 22 H 0.310 0.690 23 H 0.041 0.959 24 H 0.060 0.940 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.163 0.837 28 H 0.163 0.837 29 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.960 -10.911 2.788 11.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.158 4.158 3 Si 0.758 3.242 4 H -0.209 1.209 5 H -0.203 1.203 6 H -0.206 1.206 7 C -0.586 4.586 8 H 0.055 0.945 9 C 0.184 3.816 10 N -0.327 5.327 11 C -0.125 4.125 12 C -0.113 4.113 13 C -0.118 4.118 14 C -0.096 4.096 15 C -0.175 4.175 16 C 0.053 3.947 17 F -0.129 7.129 18 C -0.173 4.173 19 C -0.092 4.092 20 H 0.061 0.939 21 H 0.130 0.870 22 H 0.121 0.879 23 H 0.060 0.940 24 H 0.079 0.921 25 H 0.106 0.894 26 H 0.105 0.895 27 H 0.181 0.819 28 H 0.180 0.820 29 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.480 -10.091 3.045 10.828 hybrid contribution 1.314 0.518 -0.800 1.623 sum 3.794 -9.573 2.246 10.540 Atomic orbital electron populations 1.70263 1.06222 1.25755 1.47039 1.25459 0.95353 1.00721 0.94273 0.86083 0.78799 0.81074 0.78272 1.20916 1.20262 1.20610 1.21045 0.91971 0.91478 1.54108 0.94462 1.17984 0.85368 0.88433 0.89836 1.59065 1.27646 1.41661 1.04304 1.22051 1.00245 0.93589 0.96608 1.21148 0.94652 0.95737 0.99804 1.21092 0.98378 0.94892 0.97481 1.20784 0.93390 0.96238 0.99169 1.21213 1.00105 1.00322 0.95855 1.17748 0.87213 0.96537 0.93177 1.91433 1.54941 1.94717 1.71824 1.20636 0.97075 0.97064 1.02526 1.22009 0.94899 0.98491 0.93798 0.93852 0.87003 0.87850 0.94020 0.92110 0.89393 0.89460 0.81936 0.81966 0.87104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.91 12.08 21.45 0.26 -47.65 15 2 C 0.05 2.55 5.26 84.66 0.45 3.00 15 3 Si 0.93 43.51 29.54 68.60 2.03 45.53 15 4 H -0.28 -12.98 7.11 99.48 0.71 -12.28 15 5 H -0.28 -12.79 7.11 99.48 0.71 -12.09 15 6 H -0.28 -13.07 7.11 99.48 0.71 -12.36 15 7 C -0.55 -29.57 7.95 25.60 0.20 -29.37 15 8 H 0.04 2.08 7.57 -2.91 -0.02 2.05 15 9 C 0.28 12.88 0.64 2.70 0.00 12.88 15 10 N -0.80 -36.65 7.97 -154.83 -1.23 -37.88 15 11 C -0.09 -3.77 5.58 31.50 0.18 -3.59 15 12 C -0.08 -2.52 6.77 30.52 0.21 -2.31 15 13 C -0.12 -4.05 6.14 -19.58 -0.12 -4.17 15 14 C -0.08 -2.14 10.04 22.29 0.22 -1.91 15 15 C -0.16 -4.36 10.03 22.28 0.22 -4.13 15 16 C 0.07 2.49 7.30 22.35 0.16 2.66 15 17 F -0.15 -5.11 17.27 44.97 0.78 -4.33 15 18 C -0.15 -6.16 9.59 22.35 0.21 -5.94 15 19 C -0.09 -3.69 5.19 -19.60 -0.10 -3.79 15 20 H 0.25 13.67 8.31 -92.70 -0.77 12.90 15 21 H 0.32 14.57 9.03 -89.69 -0.81 13.76 15 22 H 0.31 12.56 8.98 -89.70 -0.81 11.75 15 23 H 0.04 1.94 7.91 -2.39 -0.02 1.93 15 24 H 0.06 2.85 8.06 -2.39 -0.02 2.83 15 25 H 0.09 2.45 8.14 -2.39 -0.02 2.43 15 26 H 0.09 2.56 8.14 -2.39 -0.02 2.54 15 27 H 0.16 3.12 8.06 -2.91 -0.02 3.09 15 28 H 0.16 3.34 8.06 -2.91 -0.02 3.32 15 29 H 0.11 4.70 8.06 -2.91 -0.02 4.68 15 Total: -1.00 -59.49 252.95 3.03 -56.46 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: -0.43 Total: 24.56 kcal Atomic # 6 Polarization: -38.33 SS G_CDS: 1.64 Total: -36.69 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -0.97 Total: -85.53 kcal Atomic # 9 Polarization: -5.11 SS G_CDS: 0.78 Total: -4.33 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -59.49 3.03 -56.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084349976.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.463 kcal (2) G-P(sol) polarization free energy of solvation -59.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds