Wall clock time and date at job start Mon Mar 30 2020 02:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99937 * 2 1 4 4 H 1.48500 * 109.46873 * 264.09706 * 3 2 1 5 5 H 1.48499 * 109.47213 * 24.09185 * 3 2 1 6 6 H 1.48498 * 109.47318 * 144.09698 * 3 2 1 7 7 C 1.37871 * 120.00379 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99859 * 6.12566 * 7 2 1 9 9 C 1.50696 * 120.00664 * 186.12605 * 7 2 1 10 10 N 1.46897 * 110.27047 * 183.30779 * 9 7 2 11 11 C 1.54347 * 110.30105 * 305.38078 * 9 7 2 12 12 C 1.54347 * 102.39074 * 145.37166 * 11 9 7 13 13 C 1.51377 * 105.17473 * 333.64372 * 12 11 9 14 14 C 1.38508 * 130.35564 * 197.14236 * 13 12 11 15 15 C 1.38063 * 120.24846 * 180.02562 * 14 13 12 16 16 C 1.38478 * 119.90856 * 0.02562 * 15 14 13 17 17 F 1.35105 * 120.06201 * 180.02562 * 16 15 14 18 18 C 1.38325 * 119.87970 * 359.95327 * 16 15 14 19 19 C 1.38232 * 109.75146 * 17.19794 * 13 12 11 20 20 H 0.97001 * 120.00145 * 0.02562 * 1 2 3 21 21 H 1.00896 * 111.00022 * 297.07760 * 10 9 7 22 22 H 1.00898 * 111.00241 * 61.03966 * 10 9 7 23 23 H 1.08995 * 110.82534 * 263.59880 * 11 9 7 24 24 H 1.09003 * 110.82274 * 27.15033 * 11 9 7 25 25 H 1.08999 * 110.30108 * 92.57159 * 12 11 9 26 26 H 1.09003 * 110.30250 * 214.71537 * 12 11 9 27 27 H 1.08005 * 119.88012 * 0.03977 * 14 13 12 28 28 H 1.08003 * 120.04478 * 180.02562 * 15 14 13 29 29 H 1.07994 * 119.90040 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6213 1.9744 -1.3927 5 1 1.3897 2.6855 0.5715 6 1 3.4787 1.4795 0.8210 7 6 2.0045 -1.1940 0.0005 8 1 1.4692 -2.1267 -0.0989 9 6 3.5050 -1.1977 0.1398 10 7 4.0225 -2.5685 0.0350 11 6 4.1453 -0.2996 -0.9399 12 6 5.3618 0.2941 -0.1982 13 6 4.9804 0.2757 1.2666 14 6 5.5251 0.9549 2.3438 15 6 5.0061 0.7795 3.6111 16 6 3.9372 -0.0789 3.8068 17 9 3.4266 -0.2524 5.0456 18 6 3.3923 -0.7573 2.7315 19 6 3.9135 -0.5816 1.4608 20 1 -0.4850 0.8400 -0.0004 21 1 3.6732 -3.1452 0.7856 22 1 3.8010 -2.9709 -0.8634 23 1 4.4654 -0.8921 -1.7969 24 1 3.4569 0.4877 -1.2472 25 1 6.2450 -0.3219 -0.3669 26 1 5.5442 1.3166 -0.5287 27 1 6.3589 1.6244 2.1919 28 1 5.4331 1.3111 4.4487 29 1 2.5585 -1.4265 2.8837 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084349978.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:13 Heat of formation + Delta-G solvation = -2.428631 kcal Electronic energy + Delta-G solvation = -15326.007594 eV Core-core repulsion = 12742.807204 eV Total energy + Delta-G solvation = -2583.200390 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.33488 -39.81896 -35.70214 -32.59024 -31.65603 -30.00400 -27.97832 -26.54507 -23.39041 -22.32275 -20.50903 -19.57507 -17.13895 -16.26996 -15.76441 -15.54163 -15.01623 -14.97818 -14.31980 -13.72449 -13.40062 -13.07926 -12.90533 -12.32467 -12.05851 -11.63283 -11.17120 -11.09073 -10.94389 -10.69126 -10.25378 -10.07111 -9.60489 -9.38479 -8.66623 -8.32632 -7.79345 -7.42762 -6.24113 -4.29760 1.75818 1.89558 3.19835 3.37144 3.42924 4.19865 4.34760 4.77804 4.98197 5.06440 5.40469 5.48255 5.59063 5.67731 5.87243 5.95153 6.15296 6.22608 6.43519 6.55031 6.61589 6.72212 6.75302 6.83757 6.96238 7.26301 7.42783 7.56298 8.06538 8.28538 8.36243 8.74752 9.38596 10.86439 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.024777 B = 0.015158 C = 0.013560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.803577 B = 1846.736568 C = 2064.441416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.085 3.915 3 Si 0.838 3.162 4 H -0.279 1.279 5 H -0.302 1.302 6 H -0.209 1.209 7 C -0.550 4.550 8 H 0.076 0.924 9 C 0.248 3.752 10 N -0.833 5.833 11 C -0.126 4.126 12 C -0.077 4.077 13 C -0.091 4.091 14 C -0.100 4.100 15 C -0.168 4.168 16 C 0.079 3.921 17 F -0.150 7.150 18 C -0.126 4.126 19 C -0.018 4.018 20 H 0.266 0.734 21 H 0.332 0.668 22 H 0.335 0.665 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.060 0.940 27 H 0.119 0.881 28 H 0.125 0.875 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.061 1.086 2.483 10.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.120 4.120 3 Si 0.669 3.331 4 H -0.206 1.206 5 H -0.231 1.231 6 H -0.133 1.133 7 C -0.588 4.588 8 H 0.094 0.906 9 C 0.155 3.845 10 N -0.359 5.359 11 C -0.164 4.164 12 C -0.114 4.114 13 C -0.092 4.092 14 C -0.118 4.118 15 C -0.187 4.187 16 C 0.060 3.940 17 F -0.128 7.128 18 C -0.145 4.145 19 C -0.019 4.019 20 H 0.076 0.924 21 H 0.143 0.857 22 H 0.147 0.853 23 H 0.092 0.908 24 H 0.089 0.911 25 H 0.097 0.903 26 H 0.078 0.922 27 H 0.137 0.863 28 H 0.143 0.857 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 10.589 1.504 2.619 11.011 hybrid contribution -1.078 0.789 0.118 1.341 sum 9.511 2.294 2.737 10.159 Atomic orbital electron populations 1.69904 1.06555 1.27436 1.48420 1.24992 0.94606 0.99302 0.93117 0.87869 0.82827 0.83377 0.79067 1.20638 1.23057 1.13274 1.21572 0.89561 0.94980 1.52736 0.90645 1.18208 0.93117 0.86618 0.86527 1.59124 1.65897 1.03507 1.07414 1.22754 0.95527 0.99422 0.98690 1.21060 0.99441 1.00334 0.90607 1.20564 0.95874 0.97159 0.95605 1.20272 1.00323 1.00057 0.91172 1.20746 0.98286 1.01599 0.98034 1.17546 0.96308 1.00566 0.79615 1.91431 1.86641 1.94607 1.40165 1.20584 1.01185 1.01609 0.91097 1.20879 0.91602 0.94669 0.94749 0.92413 0.85679 0.85342 0.90823 0.91147 0.90282 0.92167 0.86285 0.85709 0.85026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.52 13.96 55.43 0.77 -25.75 15 2 C 0.08 2.35 5.41 -17.82 -0.10 2.26 15 3 Si 0.84 20.43 23.26 -169.99 -3.95 16.48 15 4 H -0.28 -6.62 6.59 56.52 0.37 -6.25 15 5 H -0.30 -7.76 7.11 56.52 0.40 -7.36 15 6 H -0.21 -4.70 2.95 56.52 0.17 -4.54 15 7 C -0.55 -14.44 8.82 -34.44 -0.30 -14.74 15 8 H 0.08 2.15 8.06 -52.48 -0.42 1.73 15 9 C 0.25 5.39 0.86 -132.87 -0.11 5.28 15 10 N -0.83 -15.82 8.90 -0.29 0.00 -15.82 15 11 C -0.13 -2.56 5.45 -25.32 -0.14 -2.70 15 12 C -0.08 -1.37 6.17 -26.85 -0.17 -1.54 15 13 C -0.09 -1.77 3.87 -104.19 -0.40 -2.17 15 14 C -0.10 -1.72 9.97 -39.55 -0.39 -2.11 15 15 C -0.17 -2.89 10.03 -39.56 -0.40 -3.29 15 16 C 0.08 1.53 7.30 -39.46 -0.29 1.24 15 17 F -0.15 -2.84 17.27 2.25 0.04 -2.81 15 18 C -0.13 -2.67 9.76 -39.47 -0.39 -3.05 15 19 C -0.02 -0.38 3.19 -104.21 -0.33 -0.71 15 20 H 0.27 7.58 8.31 -40.82 -0.34 7.24 15 21 H 0.33 6.16 9.03 -39.29 -0.35 5.81 15 22 H 0.33 5.94 9.01 -39.29 -0.35 5.59 15 23 H 0.07 1.35 8.06 -51.93 -0.42 0.93 15 24 H 0.07 1.57 3.07 -51.93 -0.16 1.41 15 25 H 0.08 1.26 8.14 -51.93 -0.42 0.84 15 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 15 27 H 0.12 1.66 8.06 -52.48 -0.42 1.24 15 28 H 0.12 1.78 8.06 -52.48 -0.42 1.36 15 29 H 0.13 2.86 8.06 -52.49 -0.42 2.43 15 LS Contribution 236.87 15.07 3.57 3.57 Total: -1.00 -29.06 236.87 -5.82 -34.88 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -3.22 Total: 10.98 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -3.02 Total: -21.53 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 0.77 Total: -41.57 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.04 Total: -2.81 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -3.95 Total: 16.48 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -29.06 -5.82 -34.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084349978.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.451 kcal (2) G-P(sol) polarization free energy of solvation -29.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds