Wall clock time and date at job start Mon Mar 30 2020 02:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99937 * 2 1 4 4 H 1.48500 * 109.46873 * 264.09706 * 3 2 1 5 5 H 1.48499 * 109.47213 * 24.09185 * 3 2 1 6 6 H 1.48498 * 109.47318 * 144.09698 * 3 2 1 7 7 C 1.37871 * 120.00379 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99859 * 6.12566 * 7 2 1 9 9 C 1.50696 * 120.00664 * 186.12605 * 7 2 1 10 10 N 1.46897 * 110.27047 * 183.30779 * 9 7 2 11 11 C 1.54347 * 110.30105 * 305.38078 * 9 7 2 12 12 C 1.54347 * 102.39074 * 145.37166 * 11 9 7 13 13 C 1.51377 * 105.17473 * 333.64372 * 12 11 9 14 14 C 1.38508 * 130.35564 * 197.14236 * 13 12 11 15 15 C 1.38063 * 120.24846 * 180.02562 * 14 13 12 16 16 C 1.38478 * 119.90856 * 0.02562 * 15 14 13 17 17 F 1.35105 * 120.06201 * 180.02562 * 16 15 14 18 18 C 1.38325 * 119.87970 * 359.95327 * 16 15 14 19 19 C 1.38232 * 109.75146 * 17.19794 * 13 12 11 20 20 H 0.97001 * 120.00145 * 0.02562 * 1 2 3 21 21 H 1.00896 * 111.00022 * 297.07760 * 10 9 7 22 22 H 1.00898 * 111.00241 * 61.03966 * 10 9 7 23 23 H 1.08995 * 110.82534 * 263.59880 * 11 9 7 24 24 H 1.09003 * 110.82274 * 27.15033 * 11 9 7 25 25 H 1.08999 * 110.30108 * 92.57159 * 12 11 9 26 26 H 1.09003 * 110.30250 * 214.71537 * 12 11 9 27 27 H 1.08005 * 119.88012 * 0.03977 * 14 13 12 28 28 H 1.08003 * 120.04478 * 180.02562 * 15 14 13 29 29 H 1.07994 * 119.90040 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6213 1.9744 -1.3927 5 1 1.3897 2.6855 0.5715 6 1 3.4787 1.4795 0.8210 7 6 2.0045 -1.1940 0.0005 8 1 1.4692 -2.1267 -0.0989 9 6 3.5050 -1.1977 0.1398 10 7 4.0225 -2.5685 0.0350 11 6 4.1453 -0.2996 -0.9399 12 6 5.3618 0.2941 -0.1982 13 6 4.9804 0.2757 1.2666 14 6 5.5251 0.9549 2.3438 15 6 5.0061 0.7795 3.6111 16 6 3.9372 -0.0789 3.8068 17 9 3.4266 -0.2524 5.0456 18 6 3.3923 -0.7573 2.7315 19 6 3.9135 -0.5816 1.4608 20 1 -0.4850 0.8400 -0.0004 21 1 3.6732 -3.1452 0.7856 22 1 3.8010 -2.9709 -0.8634 23 1 4.4654 -0.8921 -1.7969 24 1 3.4569 0.4877 -1.2472 25 1 6.2450 -0.3219 -0.3669 26 1 5.5442 1.3166 -0.5287 27 1 6.3589 1.6244 2.1919 28 1 5.4331 1.3111 4.4487 29 1 2.5585 -1.4265 2.8837 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084349978.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:13 Heat of formation + Delta-G solvation = -23.125541 kcal Electronic energy + Delta-G solvation = -15326.905079 eV Core-core repulsion = 12742.807204 eV Total energy + Delta-G solvation = -2584.097875 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.82276 -41.34547 -37.26297 -34.50275 -33.32739 -31.48432 -29.48580 -28.36572 -25.12070 -23.80021 -21.94539 -21.27915 -18.94553 -17.92467 -17.46167 -17.11277 -16.52769 -16.45557 -15.93742 -15.32003 -15.15145 -14.61331 -14.43946 -13.97089 -13.72597 -13.39559 -12.90716 -12.62603 -12.42462 -12.29112 -11.95543 -11.62415 -11.38805 -11.23617 -10.69441 -9.83053 -9.41519 -8.98970 -8.37667 -6.45680 0.26350 0.43583 1.26497 1.42039 1.48397 2.31474 2.74422 2.97343 3.30964 3.65704 3.88202 4.04044 4.09981 4.28564 4.39225 4.48480 4.67079 4.88143 4.95362 5.08883 5.14126 5.25295 5.28568 5.32121 5.41351 5.51634 5.80267 6.08037 6.15941 6.35258 6.66338 6.80612 7.27352 8.75867 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.024777 B = 0.015158 C = 0.013560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.803577 B = 1846.736568 C = 2064.441416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.027 3.973 3 Si 0.890 3.110 4 H -0.266 1.266 5 H -0.326 1.326 6 H -0.172 1.172 7 C -0.542 4.542 8 H 0.033 0.967 9 C 0.244 3.756 10 N -0.820 5.820 11 C -0.130 4.130 12 C -0.071 4.071 13 C -0.101 4.101 14 C -0.088 4.088 15 C -0.154 4.154 16 C 0.066 3.934 17 F -0.152 7.152 18 C -0.151 4.151 19 C -0.045 4.045 20 H 0.262 0.738 21 H 0.332 0.668 22 H 0.341 0.659 23 H 0.090 0.910 24 H 0.051 0.949 25 H 0.104 0.896 26 H 0.087 0.913 27 H 0.166 0.834 28 H 0.163 0.837 29 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.912 2.823 2.771 14.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.172 4.172 3 Si 0.719 3.281 4 H -0.192 1.192 5 H -0.256 1.256 6 H -0.095 1.095 7 C -0.581 4.581 8 H 0.051 0.949 9 C 0.151 3.849 10 N -0.346 5.346 11 C -0.168 4.168 12 C -0.107 4.107 13 C -0.101 4.101 14 C -0.105 4.105 15 C -0.173 4.173 16 C 0.047 3.953 17 F -0.131 7.131 18 C -0.171 4.171 19 C -0.046 4.046 20 H 0.071 0.929 21 H 0.143 0.857 22 H 0.153 0.847 23 H 0.109 0.891 24 H 0.069 0.931 25 H 0.122 0.878 26 H 0.106 0.894 27 H 0.184 0.816 28 H 0.180 0.820 29 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 14.479 3.210 2.895 15.111 hybrid contribution -2.290 0.083 0.086 2.294 sum 12.188 3.293 2.981 12.973 Atomic orbital electron populations 1.70073 1.08596 1.27910 1.51741 1.25816 0.95124 1.03098 0.93190 0.87101 0.82612 0.78252 0.80136 1.19236 1.25594 1.09450 1.21932 0.92551 0.93016 1.50601 0.94900 1.18214 0.89976 0.88434 0.88256 1.59140 1.64995 1.02659 1.07826 1.22693 0.96407 0.98782 0.98908 1.21088 0.98638 1.02220 0.88781 1.20908 0.95238 0.96695 0.97281 1.20782 1.00570 0.99243 0.89940 1.21212 0.96506 0.99935 0.99633 1.17748 0.97265 1.01266 0.79048 1.91424 1.86866 1.94704 1.40090 1.20568 1.01416 1.02663 0.92436 1.20764 0.93596 0.96224 0.93999 0.92928 0.85733 0.84703 0.89101 0.93130 0.87758 0.89437 0.81611 0.81954 0.87683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.41 13.96 21.44 0.30 -59.11 15 2 C 0.03 1.53 5.41 84.65 0.46 1.99 15 3 Si 0.89 42.15 23.26 68.60 1.60 43.75 15 4 H -0.27 -11.88 6.59 99.48 0.66 -11.23 15 5 H -0.33 -16.55 7.11 99.48 0.71 -15.85 15 6 H -0.17 -7.09 2.95 99.48 0.29 -6.80 15 7 C -0.54 -29.47 8.82 25.60 0.23 -29.24 15 8 H 0.03 2.00 8.06 -2.91 -0.02 1.97 15 9 C 0.24 10.43 0.86 2.71 0.00 10.44 15 10 N -0.82 -30.57 8.90 -154.83 -1.38 -31.95 15 11 C -0.13 -4.90 5.45 31.51 0.17 -4.72 15 12 C -0.07 -2.13 6.17 30.52 0.19 -1.94 15 13 C -0.10 -3.42 3.87 -19.59 -0.08 -3.50 15 14 C -0.09 -2.46 9.97 22.29 0.22 -2.24 15 15 C -0.15 -4.55 10.03 22.29 0.22 -4.33 15 16 C 0.07 2.43 7.30 22.35 0.16 2.59 15 17 F -0.15 -5.59 17.27 44.97 0.78 -4.82 15 18 C -0.15 -6.40 9.76 22.34 0.22 -6.18 15 19 C -0.04 -1.83 3.19 -19.60 -0.06 -1.89 15 20 H 0.26 15.77 8.31 -92.71 -0.77 15.00 15 21 H 0.33 12.46 9.03 -89.70 -0.81 11.65 15 22 H 0.34 11.90 9.01 -89.70 -0.81 11.10 15 23 H 0.09 3.04 8.06 -2.39 -0.02 3.02 15 24 H 0.05 2.12 3.07 -2.39 -0.01 2.11 15 25 H 0.10 2.68 8.14 -2.39 -0.02 2.66 15 26 H 0.09 2.23 8.14 -2.39 -0.02 2.21 15 27 H 0.17 3.21 8.06 -2.91 -0.02 3.18 15 28 H 0.16 3.59 8.06 -2.91 -0.02 3.57 15 29 H 0.10 4.83 8.06 -2.91 -0.02 4.81 15 Total: -1.00 -65.89 236.87 2.14 -63.75 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: -0.89 Total: 27.41 kcal Atomic # 6 Polarization: -40.76 SS G_CDS: 1.74 Total: -39.03 kcal Atomic # 7 Polarization: -89.98 SS G_CDS: -1.08 Total: -91.06 kcal Atomic # 9 Polarization: -5.59 SS G_CDS: 0.78 Total: -4.82 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 1.60 Total: 43.75 kcal Total: -65.89 2.14 -63.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084349978.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.625 kcal (2) G-P(sol) polarization free energy of solvation -65.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds