Wall clock time and date at job start Mon Mar 30 2020 02:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00102 * 2 1 4 4 H 1.48500 * 109.46960 * 239.99851 * 3 2 1 5 5 H 1.48494 * 109.47340 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47217 * 119.99736 * 3 2 1 7 7 C 1.37881 * 119.99727 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99917 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99966 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.57310 * 59.74948 * 9 7 2 11 11 C 1.53434 * 109.68032 * 299.43124 * 9 7 2 12 12 N 1.46920 * 107.79140 * 176.90765 * 11 9 7 13 13 C 1.40081 * 118.90489 * 44.64193 * 12 11 9 14 14 C 1.39047 * 119.10762 * 166.65935 * 13 12 11 15 15 C 1.38043 * 120.06639 * 179.72190 * 14 13 12 16 16 C 1.38490 * 119.87827 * 359.76319 * 15 14 13 17 17 F 1.35105 * 119.94078 * 180.33330 * 16 15 14 18 18 C 1.38294 * 120.11068 * 0.60624 * 16 15 14 19 19 C 1.38527 * 120.28680 * 359.41010 * 18 16 15 20 20 C 1.50598 * 118.90592 * 180.02562 * 19 18 16 21 21 H 0.97006 * 119.99467 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.79692 * 296.47892 * 11 9 7 23 23 H 1.08998 * 109.79772 * 57.33712 * 11 9 7 24 24 H 0.96996 * 120.54969 * 224.66727 * 12 11 9 25 25 H 1.07997 * 119.97259 * 359.70409 * 14 13 12 26 26 H 1.07993 * 120.05814 * 180.02562 * 15 14 13 27 27 H 1.08002 * 119.85945 * 179.69493 * 18 16 15 28 28 H 1.09000 * 109.27392 * 279.74463 * 20 19 18 29 29 H 1.08999 * 109.27341 * 39.23014 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0017 10 1 0.6199 -2.5573 -0.8852 11 6 0.3783 -2.5908 1.2604 12 7 -0.3916 -3.8397 1.1828 13 6 0.2619 -5.0147 0.7898 14 6 -0.3725 -6.2374 0.9797 15 6 0.2510 -7.4072 0.5944 16 6 1.5075 -7.3605 0.0139 17 9 2.1160 -8.5041 -0.3698 18 6 2.1427 -6.1457 -0.1685 19 6 1.5225 -4.9683 0.2163 20 6 2.2424 -3.6629 0.0028 21 1 -0.4850 0.8401 -0.0004 22 1 1.0107 -2.6016 2.1481 23 1 -0.3017 -1.7399 1.3009 24 1 -1.3369 -3.8504 1.3998 25 1 -1.3538 -6.2720 1.4292 26 1 -0.2420 -8.3567 0.7415 27 1 3.1246 -6.1144 -0.6171 28 1 2.9680 -3.5170 0.8030 29 1 2.7637 -3.6918 -0.9540 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084768362.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:50 Heat of formation + Delta-G solvation = -31.681657 kcal Electronic energy + Delta-G solvation = -14543.154423 eV Core-core repulsion = 11958.685528 eV Total energy + Delta-G solvation = -2584.468896 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.30274 -39.31414 -35.66107 -33.25750 -32.13579 -29.46377 -28.62948 -25.18226 -23.74030 -22.17548 -21.75187 -18.85205 -17.07376 -16.49346 -16.30930 -15.73068 -15.05399 -14.62550 -14.09582 -13.74125 -13.31585 -12.82660 -12.67503 -12.41607 -12.25705 -12.13764 -11.58048 -11.01278 -10.89086 -10.51379 -10.38010 -10.07668 -9.38511 -9.32887 -8.99722 -8.52985 -8.30528 -6.65793 -6.14537 -4.20810 1.70995 1.89684 3.25234 3.30379 3.33017 4.15636 4.23485 4.35807 4.85784 5.17909 5.20549 5.28244 5.63771 5.84518 6.15069 6.23599 6.31079 6.36201 6.62444 6.65894 6.75364 6.84192 6.90348 7.05833 7.31475 7.46404 7.70936 7.82155 8.01507 8.30791 8.49597 8.83097 9.44931 10.91950 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.057014 B = 0.007029 C = 0.006381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.993800 B = 3982.606172 C = 4387.130189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.062 3.938 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.060 0.940 9 C 0.036 3.964 10 H 0.034 0.966 11 C 0.119 3.881 12 N -0.743 5.743 13 C 0.221 3.779 14 C -0.183 4.183 15 C -0.117 4.117 16 C 0.019 3.981 17 F -0.157 7.157 18 C -0.113 4.113 19 C -0.116 4.116 20 C -0.069 4.069 21 H 0.263 0.737 22 H 0.035 0.965 23 H 0.108 0.892 24 H 0.391 0.609 25 H 0.122 0.878 26 H 0.124 0.876 27 H 0.126 0.874 28 H 0.064 0.936 29 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.449 -8.748 2.060 8.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.553 4.553 8 H 0.078 0.922 9 C 0.017 3.983 10 H 0.053 0.947 11 C -0.004 4.004 12 N -0.369 5.369 13 C 0.115 3.885 14 C -0.206 4.206 15 C -0.136 4.136 16 C -0.003 4.003 17 F -0.136 7.136 18 C -0.132 4.132 19 C -0.121 4.121 20 C -0.106 4.106 21 H 0.073 0.927 22 H 0.053 0.947 23 H 0.126 0.874 24 H 0.224 0.776 25 H 0.140 0.860 26 H 0.142 0.858 27 H 0.144 0.856 28 H 0.083 0.917 29 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.470 -8.434 2.067 8.696 hybrid contribution 0.131 0.654 0.003 0.667 sum -0.338 -7.780 2.070 8.057 Atomic orbital electron populations 1.69833 1.05946 1.26924 1.50425 1.25002 0.94924 0.99313 0.94718 0.86587 0.79574 0.82725 0.78751 1.20168 1.21265 1.20160 1.21099 0.93091 0.90058 1.51042 0.92220 1.18953 0.93061 0.91843 0.94431 0.94749 1.22098 0.95968 0.83950 0.98376 1.45312 1.11129 1.06942 1.73509 1.17795 0.91853 0.86869 0.92021 1.20450 1.01515 0.90576 1.08095 1.20664 0.93985 0.98652 1.00305 1.17314 0.93920 0.81652 1.07379 1.91401 1.83343 1.48790 1.90029 1.20850 1.00202 0.90529 1.01633 1.19589 0.95000 0.95829 1.01679 1.20559 0.98432 0.90737 1.00850 0.92696 0.94692 0.87383 0.77587 0.85984 0.85841 0.85581 0.91740 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.01 11.37 55.43 0.63 -23.38 15 2 C 0.06 1.62 5.31 -17.82 -0.09 1.53 15 3 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 15 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 15 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 15 7 C -0.51 -13.36 8.55 -34.44 -0.29 -13.65 15 8 H 0.06 1.52 7.75 -52.49 -0.41 1.12 15 9 C 0.04 0.87 2.25 -91.61 -0.21 0.66 15 10 H 0.03 0.92 8.14 -51.93 -0.42 0.50 15 11 C 0.12 2.64 6.21 -3.59 -0.02 2.62 15 12 N -0.74 -14.07 5.81 -58.06 -0.34 -14.40 15 13 C 0.22 4.11 6.48 -83.66 -0.54 3.57 15 14 C -0.18 -2.91 9.87 -39.35 -0.39 -3.30 15 15 C -0.12 -1.79 10.03 -39.56 -0.40 -2.19 15 16 C 0.02 0.31 7.29 -39.47 -0.29 0.02 15 17 F -0.16 -2.60 17.26 2.25 0.04 -2.56 15 18 C -0.11 -1.96 9.64 -39.45 -0.38 -2.34 15 19 C -0.12 -2.24 5.76 -104.44 -0.60 -2.84 15 20 C -0.07 -1.42 5.02 -28.00 -0.14 -1.57 15 21 H 0.26 6.80 8.31 -40.82 -0.34 6.46 15 22 H 0.03 0.78 8.14 -51.93 -0.42 0.36 15 23 H 0.11 2.61 6.11 -51.93 -0.32 2.29 15 24 H 0.39 6.40 8.86 -40.82 -0.36 6.04 15 25 H 0.12 1.62 8.06 -52.49 -0.42 1.20 15 26 H 0.12 1.57 8.06 -52.49 -0.42 1.15 15 27 H 0.13 1.98 8.06 -52.49 -0.42 1.56 15 28 H 0.06 1.32 8.12 -51.93 -0.42 0.90 15 29 H 0.06 1.27 8.12 -51.93 -0.42 0.84 15 LS Contribution 249.42 15.07 3.76 3.76 Total: -1.00 -26.63 249.42 -7.46 -34.09 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -3.18 Total: 4.69 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -3.35 Total: -17.49 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.29 Total: -37.78 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.04 Total: -2.56 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -26.63 -7.46 -34.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084768362.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.406 kcal (2) G-P(sol) polarization free energy of solvation -26.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds