Wall clock time and date at job start Mon Mar 30 2020 02:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00102 * 2 1 4 4 H 1.48500 * 109.46960 * 239.99851 * 3 2 1 5 5 H 1.48494 * 109.47340 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47217 * 119.99736 * 3 2 1 7 7 C 1.37881 * 119.99727 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99917 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99966 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.57310 * 59.74948 * 9 7 2 11 11 C 1.53434 * 109.68032 * 299.43124 * 9 7 2 12 12 N 1.46920 * 107.79140 * 176.90765 * 11 9 7 13 13 C 1.40081 * 118.90489 * 44.64193 * 12 11 9 14 14 C 1.39047 * 119.10762 * 166.65935 * 13 12 11 15 15 C 1.38043 * 120.06639 * 179.72190 * 14 13 12 16 16 C 1.38490 * 119.87827 * 359.76319 * 15 14 13 17 17 F 1.35105 * 119.94078 * 180.33330 * 16 15 14 18 18 C 1.38294 * 120.11068 * 0.60624 * 16 15 14 19 19 C 1.38527 * 120.28680 * 359.41010 * 18 16 15 20 20 C 1.50598 * 118.90592 * 180.02562 * 19 18 16 21 21 H 0.97006 * 119.99467 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.79692 * 296.47892 * 11 9 7 23 23 H 1.08998 * 109.79772 * 57.33712 * 11 9 7 24 24 H 0.96996 * 120.54969 * 224.66727 * 12 11 9 25 25 H 1.07997 * 119.97259 * 359.70409 * 14 13 12 26 26 H 1.07993 * 120.05814 * 180.02562 * 15 14 13 27 27 H 1.08002 * 119.85945 * 179.69493 * 18 16 15 28 28 H 1.09000 * 109.27392 * 279.74463 * 20 19 18 29 29 H 1.08999 * 109.27341 * 39.23014 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0017 10 1 0.6199 -2.5573 -0.8852 11 6 0.3783 -2.5908 1.2604 12 7 -0.3916 -3.8397 1.1828 13 6 0.2619 -5.0147 0.7898 14 6 -0.3725 -6.2374 0.9797 15 6 0.2510 -7.4072 0.5944 16 6 1.5075 -7.3605 0.0139 17 9 2.1160 -8.5041 -0.3698 18 6 2.1427 -6.1457 -0.1685 19 6 1.5225 -4.9683 0.2163 20 6 2.2424 -3.6629 0.0028 21 1 -0.4850 0.8401 -0.0004 22 1 1.0107 -2.6016 2.1481 23 1 -0.3017 -1.7399 1.3009 24 1 -1.3369 -3.8504 1.3998 25 1 -1.3538 -6.2720 1.4292 26 1 -0.2420 -8.3567 0.7415 27 1 3.1246 -6.1144 -0.6171 28 1 2.9680 -3.5170 0.8030 29 1 2.7637 -3.6918 -0.9540 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084768362.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:50 Heat of formation + Delta-G solvation = -46.147768 kcal Electronic energy + Delta-G solvation = -14543.781721 eV Core-core repulsion = 11958.685528 eV Total energy + Delta-G solvation = -2585.096194 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.61402 -40.76535 -37.26073 -34.95355 -33.81367 -31.08822 -30.06888 -27.02522 -25.37532 -23.53724 -23.35838 -20.48998 -18.68594 -18.11971 -17.82524 -17.21156 -16.46611 -16.35937 -15.62233 -15.20857 -14.88899 -14.39674 -14.23525 -13.96279 -13.77424 -13.68348 -13.15428 -12.81229 -12.64128 -12.30435 -11.90855 -11.77456 -11.16886 -11.10291 -10.71954 -10.38957 -9.71578 -8.17827 -8.08233 -6.27067 0.38680 0.53466 1.45344 1.45589 1.53380 2.42519 2.77107 2.79812 3.17439 3.52891 3.89734 4.00796 4.31596 4.47769 4.56255 4.62246 4.74445 4.94421 5.03593 5.14096 5.14447 5.30013 5.36591 5.54067 5.57157 5.79506 5.89035 5.98218 6.25259 6.53530 6.82509 7.08999 7.41642 8.91400 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.057014 B = 0.007029 C = 0.006381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.993800 B = 3982.606172 C = 4387.130189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.018 3.982 3 Si 0.957 3.043 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.535 4.535 8 H 0.058 0.942 9 C 0.035 3.965 10 H -0.003 1.003 11 C 0.135 3.865 12 N -0.743 5.743 13 C 0.200 3.800 14 C -0.170 4.170 15 C -0.106 4.106 16 C 0.014 3.986 17 F -0.154 7.154 18 C -0.115 4.115 19 C -0.142 4.142 20 C -0.060 4.060 21 H 0.264 0.736 22 H 0.029 0.971 23 H 0.086 0.914 24 H 0.403 0.597 25 H 0.153 0.847 26 H 0.159 0.841 27 H 0.137 0.863 28 H 0.062 0.938 29 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.606 -10.015 2.510 10.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.181 4.181 3 Si 0.782 3.218 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.574 4.574 8 H 0.076 0.924 9 C 0.016 3.984 10 H 0.015 0.985 11 C 0.010 3.990 12 N -0.371 5.371 13 C 0.095 3.905 14 C -0.193 4.193 15 C -0.125 4.125 16 C -0.007 4.007 17 F -0.133 7.133 18 C -0.134 4.134 19 C -0.147 4.147 20 C -0.097 4.097 21 H 0.073 0.927 22 H 0.047 0.953 23 H 0.104 0.896 24 H 0.239 0.761 25 H 0.171 0.829 26 H 0.176 0.824 27 H 0.155 0.845 28 H 0.081 0.919 29 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.629 -9.735 2.516 10.075 hybrid contribution 0.170 0.939 -0.167 0.969 sum -0.458 -8.796 2.349 9.116 Atomic orbital electron populations 1.69955 1.07084 1.27557 1.50868 1.25719 0.95706 1.02334 0.94366 0.85629 0.78396 0.78909 0.78842 1.19934 1.20976 1.19462 1.21431 0.93279 0.91384 1.51264 0.92394 1.18859 0.93381 0.92565 0.93598 0.98478 1.21619 0.95348 0.84865 0.97139 1.45035 1.11592 1.06127 1.74365 1.18068 0.92067 0.87595 0.92817 1.20753 1.02410 0.89352 1.06748 1.21046 0.93165 0.99931 0.98375 1.17471 0.94501 0.81388 1.07318 1.91412 1.83418 1.48488 1.90011 1.20928 1.00765 0.90363 1.01365 1.19510 0.95907 0.95455 1.03798 1.20362 0.97744 0.90845 1.00798 0.92720 0.95274 0.89583 0.76130 0.82898 0.82372 0.84518 0.91940 0.91930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.18 11.37 21.45 0.24 -49.94 15 2 C 0.02 0.95 5.31 84.65 0.45 1.40 15 3 Si 0.96 41.85 29.54 68.60 2.03 43.88 15 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 15 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 15 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 15 7 C -0.54 -28.41 8.55 25.60 0.22 -28.19 15 8 H 0.06 3.01 7.75 -2.91 -0.02 2.99 15 9 C 0.04 1.74 2.25 -11.44 -0.03 1.71 15 10 H 0.00 -0.17 8.14 -2.38 -0.02 -0.18 15 11 C 0.13 6.11 6.21 86.44 0.54 6.65 15 12 N -0.74 -27.86 5.81 -337.60 -1.96 -29.82 15 13 C 0.20 7.17 6.48 38.10 0.25 7.41 15 14 C -0.17 -4.84 9.87 22.42 0.22 -4.62 15 15 C -0.11 -2.85 10.03 22.28 0.22 -2.63 15 16 C 0.01 0.44 7.29 22.34 0.16 0.60 15 17 F -0.15 -4.68 17.26 44.97 0.78 -3.91 15 18 C -0.11 -3.84 9.64 22.35 0.22 -3.63 15 19 C -0.14 -5.38 5.76 -19.75 -0.11 -5.50 15 20 C -0.06 -2.55 5.02 29.77 0.15 -2.40 15 21 H 0.26 13.80 8.31 -92.70 -0.77 13.03 15 22 H 0.03 1.33 8.14 -2.39 -0.02 1.31 15 23 H 0.09 4.29 6.11 -2.39 -0.01 4.27 15 24 H 0.40 12.85 8.86 -92.71 -0.82 12.03 15 25 H 0.15 3.40 8.06 -2.91 -0.02 3.37 15 26 H 0.16 3.19 8.06 -2.91 -0.02 3.16 15 27 H 0.14 4.15 8.06 -2.91 -0.02 4.12 15 28 H 0.06 2.60 8.12 -2.39 -0.02 2.58 15 29 H 0.06 2.56 8.12 -2.39 -0.02 2.54 15 Total: -1.00 -56.83 249.42 3.71 -53.11 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.34 Total: 15.86 kcal Atomic # 6 Polarization: -31.47 SS G_CDS: 2.28 Total: -29.19 kcal Atomic # 7 Polarization: -78.04 SS G_CDS: -1.72 Total: -79.76 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.78 Total: -3.91 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -56.83 3.71 -53.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084768362.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.965 kcal (2) G-P(sol) polarization free energy of solvation -56.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds