Wall clock time and date at job start Mon Mar 30 2020 02:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.57596 * 299.99372 * 9 7 2 11 11 C 1.53428 * 109.57908 * 60.24679 * 9 7 2 12 12 N 1.46921 * 107.77517 * 182.94291 * 11 9 7 13 13 C 1.40080 * 118.97950 * 315.52780 * 12 11 9 14 14 C 1.39051 * 119.10206 * 193.24314 * 13 12 11 15 15 C 1.38030 * 120.06638 * 180.19968 * 14 13 12 16 16 C 1.38496 * 119.88321 * 0.02562 * 15 14 13 17 17 F 1.35095 * 119.94609 * 179.90733 * 16 15 14 18 18 C 1.38296 * 120.10340 * 359.93079 * 16 15 14 19 19 C 1.38526 * 120.29714 * 0.02562 * 18 16 15 20 20 C 1.50591 * 118.91152 * 180.14137 * 19 18 16 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.79835 * 302.62573 * 11 9 7 23 23 H 1.09002 * 109.79373 * 63.48636 * 11 9 7 24 24 H 0.96996 * 120.46721 * 135.43177 * 12 11 9 25 25 H 1.08001 * 119.96787 * 0.17146 * 14 13 12 26 26 H 1.08001 * 120.06067 * 180.02562 * 15 14 13 27 27 H 1.08002 * 119.85056 * 179.97438 * 18 16 15 28 28 H 1.08993 * 109.27083 * 80.20733 * 20 19 18 29 29 H 1.09003 * 109.24473 * 320.71852 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8771 -0.6801 -0.8889 11 6 4.0252 -0.4775 1.2557 12 7 5.4919 -0.4377 1.1811 13 6 6.1833 -1.5925 0.7929 14 6 7.5593 -1.6535 0.9845 15 6 8.2610 -2.7801 0.6055 16 6 7.5923 -3.8496 0.0337 17 9 8.2781 -4.9522 -0.3394 18 6 6.2237 -3.7906 -0.1565 19 6 5.5135 -2.6632 0.2225 20 6 4.0239 -2.6336 0.0040 21 1 -0.4850 0.8401 0.0004 22 1 3.6279 0.5369 1.2905 23 1 3.7172 -1.0262 2.1458 24 1 5.9734 0.3764 1.3960 25 1 8.0795 -0.8183 1.4297 26 1 9.3296 -2.8275 0.7547 27 1 5.7065 -4.6268 -0.6031 28 1 3.5319 -3.1868 0.8038 29 1 3.7917 -3.1017 -0.9527 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084768364.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:53 Heat of formation + Delta-G solvation = -22.135370 kcal Electronic energy + Delta-G solvation = -14632.931883 eV Core-core repulsion = 12048.876945 eV Total energy + Delta-G solvation = -2584.054938 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.43095 -39.55651 -35.96611 -33.39282 -32.22244 -30.05201 -28.88345 -25.36899 -24.00601 -22.35513 -21.71149 -18.99824 -17.27096 -17.03027 -16.45821 -16.03875 -15.18284 -14.83617 -14.08962 -13.93231 -13.59411 -13.10486 -12.92872 -12.56977 -12.51595 -12.38891 -12.12087 -11.24729 -10.87660 -10.56787 -10.28771 -10.07518 -9.63779 -9.33487 -9.16317 -8.69035 -8.49986 -6.91019 -6.20247 -4.20715 1.55729 1.72498 3.11208 3.26816 3.27653 3.92714 3.99199 4.27002 4.70815 5.03663 5.10950 5.14079 5.47602 5.67072 5.73561 5.97970 6.07703 6.15162 6.29005 6.42551 6.47021 6.50067 6.57895 6.84606 6.96673 7.10428 7.32620 7.55934 7.74662 8.16442 8.39514 8.84371 9.40238 10.92711 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.052119 B = 0.007996 C = 0.007155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.103438 B = 3501.049663 C = 3912.361275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.071 3.929 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.263 1.263 6 H -0.293 1.293 7 C -0.515 4.515 8 H 0.079 0.921 9 C 0.002 3.998 10 H 0.035 0.965 11 C 0.113 3.887 12 N -0.750 5.750 13 C 0.217 3.783 14 C -0.177 4.177 15 C -0.118 4.118 16 C 0.027 3.973 17 F -0.154 7.154 18 C -0.112 4.112 19 C -0.114 4.114 20 C -0.059 4.059 21 H 0.266 0.734 22 H 0.063 0.937 23 H 0.060 0.940 24 H 0.392 0.608 25 H 0.124 0.876 26 H 0.126 0.874 27 H 0.130 0.870 28 H 0.072 0.928 29 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.158 -2.096 1.982 13.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.131 4.131 3 Si 0.709 3.291 4 H -0.205 1.205 5 H -0.188 1.188 6 H -0.220 1.220 7 C -0.553 4.553 8 H 0.097 0.903 9 C -0.018 4.018 10 H 0.053 0.947 11 C -0.010 4.010 12 N -0.378 5.378 13 C 0.112 3.888 14 C -0.199 4.199 15 C -0.137 4.137 16 C 0.006 3.994 17 F -0.133 7.133 18 C -0.131 4.131 19 C -0.119 4.119 20 C -0.096 4.096 21 H 0.076 0.924 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.226 0.774 25 H 0.142 0.858 26 H 0.144 0.856 27 H 0.148 0.852 28 H 0.090 0.910 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 12.773 -2.028 1.979 13.083 hybrid contribution 0.689 1.158 0.091 1.350 sum 13.461 -0.871 2.070 13.647 Atomic orbital electron populations 1.69879 1.06225 1.27114 1.50004 1.25040 0.94740 0.98946 0.94403 0.86970 0.80333 0.83864 0.77910 1.20485 1.18788 1.22018 1.20969 0.88091 0.94803 1.51438 0.90320 1.19443 0.96902 0.92072 0.93351 0.94708 1.22382 0.76898 1.00840 1.00907 1.45100 1.07147 1.10571 1.74945 1.17702 0.90600 0.87833 0.92642 1.20442 0.92573 0.99326 1.07607 1.20691 0.99792 0.92856 1.00370 1.17345 0.90226 0.85072 1.06790 1.91415 1.79847 1.51832 1.90206 1.20870 0.91988 0.98795 1.01460 1.19617 0.97645 0.93169 1.01472 1.20354 0.87853 0.99557 1.01806 0.92437 0.91870 0.92195 0.77425 0.85848 0.85618 0.85230 0.90951 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.28 13.96 55.43 0.77 -25.51 15 2 C 0.07 1.95 5.45 -17.82 -0.10 1.85 15 3 Si 0.88 20.58 24.41 -169.99 -4.15 16.43 15 4 H -0.28 -6.21 6.84 56.52 0.39 -5.83 15 5 H -0.26 -5.96 6.53 56.52 0.37 -5.60 15 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 15 7 C -0.51 -13.68 9.13 -34.44 -0.31 -14.00 15 8 H 0.08 2.26 7.99 -52.49 -0.42 1.84 15 9 C 0.00 0.04 1.84 -91.66 -0.17 -0.13 15 10 H 0.03 0.83 7.20 -51.93 -0.37 0.45 15 11 C 0.11 2.29 5.89 -3.59 -0.02 2.27 15 12 N -0.75 -12.95 5.80 -58.06 -0.34 -13.28 15 13 C 0.22 3.71 6.48 -83.66 -0.54 3.17 15 14 C -0.18 -2.55 9.87 -39.36 -0.39 -2.94 15 15 C -0.12 -1.66 10.03 -39.56 -0.40 -2.06 15 16 C 0.03 0.42 7.29 -39.46 -0.29 0.13 15 17 F -0.15 -2.40 17.26 2.25 0.04 -2.36 15 18 C -0.11 -1.81 9.64 -39.45 -0.38 -2.19 15 19 C -0.11 -2.04 5.76 -104.44 -0.60 -2.64 15 20 C -0.06 -1.15 5.03 -28.04 -0.14 -1.29 15 21 H 0.27 7.32 8.31 -40.82 -0.34 6.98 15 22 H 0.06 1.33 3.32 -51.93 -0.17 1.16 15 23 H 0.06 1.22 8.14 -51.93 -0.42 0.80 15 24 H 0.39 5.69 8.86 -40.82 -0.36 5.32 15 25 H 0.12 1.46 8.06 -52.49 -0.42 1.04 15 26 H 0.13 1.45 8.06 -52.49 -0.42 1.03 15 27 H 0.13 1.89 8.06 -52.49 -0.42 1.47 15 28 H 0.07 1.41 8.11 -51.93 -0.42 0.99 15 29 H 0.07 1.35 8.12 -51.93 -0.42 0.93 15 LS Contribution 242.55 15.07 3.66 3.66 Total: -1.00 -28.46 242.55 -6.40 -34.86 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -3.04 Total: 4.03 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -3.34 Total: -17.83 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.44 Total: -38.79 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.04 Total: -2.36 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.15 Total: 16.43 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -28.46 -6.40 -34.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084768364.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.730 kcal (2) G-P(sol) polarization free energy of solvation -28.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds