Wall clock time and date at job start Mon Mar 30 2020 02:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.57596 * 299.99372 * 9 7 2 11 11 C 1.53428 * 109.57908 * 60.24679 * 9 7 2 12 12 N 1.46921 * 107.77517 * 182.94291 * 11 9 7 13 13 C 1.40080 * 118.97950 * 315.52780 * 12 11 9 14 14 C 1.39051 * 119.10206 * 193.24314 * 13 12 11 15 15 C 1.38030 * 120.06638 * 180.19968 * 14 13 12 16 16 C 1.38496 * 119.88321 * 0.02562 * 15 14 13 17 17 F 1.35095 * 119.94609 * 179.90733 * 16 15 14 18 18 C 1.38296 * 120.10340 * 359.93079 * 16 15 14 19 19 C 1.38526 * 120.29714 * 0.02562 * 18 16 15 20 20 C 1.50591 * 118.91152 * 180.14137 * 19 18 16 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.79835 * 302.62573 * 11 9 7 23 23 H 1.09002 * 109.79373 * 63.48636 * 11 9 7 24 24 H 0.96996 * 120.46721 * 135.43177 * 12 11 9 25 25 H 1.08001 * 119.96787 * 0.17146 * 14 13 12 26 26 H 1.08001 * 120.06067 * 180.02562 * 15 14 13 27 27 H 1.08002 * 119.85056 * 179.97438 * 18 16 15 28 28 H 1.08993 * 109.27083 * 80.20733 * 20 19 18 29 29 H 1.09003 * 109.24473 * 320.71852 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8771 -0.6801 -0.8889 11 6 4.0252 -0.4775 1.2557 12 7 5.4919 -0.4377 1.1811 13 6 6.1833 -1.5925 0.7929 14 6 7.5593 -1.6535 0.9845 15 6 8.2610 -2.7801 0.6055 16 6 7.5923 -3.8496 0.0337 17 9 8.2781 -4.9522 -0.3394 18 6 6.2237 -3.7906 -0.1565 19 6 5.5135 -2.6632 0.2225 20 6 4.0239 -2.6336 0.0040 21 1 -0.4850 0.8401 0.0004 22 1 3.6279 0.5369 1.2905 23 1 3.7172 -1.0262 2.1458 24 1 5.9734 0.3764 1.3960 25 1 8.0795 -0.8183 1.4297 26 1 9.3296 -2.8275 0.7547 27 1 5.7065 -4.6268 -0.6031 28 1 3.5319 -3.1868 0.8038 29 1 3.7917 -3.1017 -0.9527 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084768364.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:53 Heat of formation + Delta-G solvation = -40.107441 kcal Electronic energy + Delta-G solvation = -14633.711210 eV Core-core repulsion = 12048.876945 eV Total energy + Delta-G solvation = -2584.834265 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.64109 -40.89938 -37.44791 -35.03961 -33.95207 -31.60180 -30.20381 -27.12522 -25.55648 -23.59844 -23.26785 -20.56140 -19.00874 -18.53346 -17.82712 -17.39170 -16.48643 -16.38922 -15.66617 -15.41113 -15.05030 -14.79384 -14.40445 -14.00865 -13.96382 -13.81109 -13.51041 -12.98173 -12.49924 -12.15644 -11.92720 -11.76064 -11.33216 -11.19247 -10.78127 -10.64398 -9.75420 -8.32327 -8.22961 -6.37907 0.35427 0.48277 1.25861 1.36238 1.45379 2.28791 2.58603 2.75530 3.02971 3.48735 3.82424 3.94866 4.13854 4.29913 4.38809 4.46873 4.57426 4.73379 4.79988 4.89315 5.04524 5.24611 5.31482 5.35123 5.47161 5.54858 5.59848 5.91325 6.22261 6.38626 6.69421 6.96503 7.27066 8.84236 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.052119 B = 0.007996 C = 0.007155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.103438 B = 3501.049663 C = 3912.361275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.014 3.986 3 Si 0.945 3.055 4 H -0.256 1.256 5 H -0.249 1.249 6 H -0.298 1.298 7 C -0.520 4.520 8 H 0.038 0.962 9 C 0.003 3.997 10 H 0.025 0.975 11 C 0.123 3.877 12 N -0.745 5.745 13 C 0.200 3.800 14 C -0.161 4.161 15 C -0.107 4.107 16 C 0.020 3.980 17 F -0.154 7.154 18 C -0.116 4.116 19 C -0.138 4.138 20 C -0.053 4.053 21 H 0.267 0.733 22 H 0.061 0.939 23 H 0.055 0.945 24 H 0.409 0.591 25 H 0.158 0.842 26 H 0.160 0.840 27 H 0.136 0.864 28 H 0.062 0.938 29 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.475 -1.036 2.612 16.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.183 4.183 3 Si 0.771 3.229 4 H -0.181 1.181 5 H -0.173 1.173 6 H -0.225 1.225 7 C -0.559 4.559 8 H 0.057 0.943 9 C -0.017 4.017 10 H 0.043 0.957 11 C -0.002 4.002 12 N -0.376 5.376 13 C 0.096 3.904 14 C -0.183 4.183 15 C -0.126 4.126 16 C -0.001 4.001 17 F -0.133 7.133 18 C -0.135 4.135 19 C -0.143 4.143 20 C -0.090 4.090 21 H 0.077 0.923 22 H 0.078 0.922 23 H 0.073 0.927 24 H 0.246 0.754 25 H 0.176 0.824 26 H 0.177 0.823 27 H 0.154 0.846 28 H 0.080 0.920 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 16.135 -0.986 2.616 16.376 hybrid contribution -0.319 0.674 -0.137 0.758 sum 15.817 -0.312 2.479 16.013 Atomic orbital electron populations 1.70037 1.08229 1.28223 1.51981 1.25904 0.95456 1.02984 0.93998 0.85906 0.79198 0.78637 0.79125 1.18127 1.17258 1.22549 1.21220 0.90583 0.93375 1.50692 0.94329 1.19330 0.94010 0.94171 0.94176 0.95723 1.21951 0.79135 0.99986 0.99108 1.44817 1.05603 1.11602 1.75543 1.17936 0.91847 0.87443 0.93188 1.20763 0.91222 1.00279 1.06079 1.21079 1.01420 0.91698 0.98387 1.17514 0.90008 0.85627 1.06963 1.91419 1.79686 1.51974 1.90241 1.20924 0.92651 0.98587 1.01350 1.19445 0.96275 0.94751 1.03811 1.20169 0.89859 0.97630 1.01347 0.92348 0.92155 0.92711 0.75432 0.82419 0.82282 0.84627 0.91965 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.38 13.96 21.45 0.30 -57.08 15 2 C 0.01 0.80 5.45 84.66 0.46 1.27 15 3 Si 0.95 42.24 24.41 68.60 1.67 43.92 15 4 H -0.26 -10.47 6.84 99.48 0.68 -9.79 15 5 H -0.25 -10.44 6.53 99.48 0.65 -9.79 15 6 H -0.30 -13.49 7.11 99.48 0.71 -12.78 15 7 C -0.52 -28.68 9.13 25.60 0.23 -28.44 15 8 H 0.04 2.36 7.99 -2.91 -0.02 2.33 15 9 C 0.00 0.13 1.84 -11.47 -0.02 0.10 15 10 H 0.02 1.16 7.20 -2.39 -0.02 1.14 15 11 C 0.12 4.82 5.89 86.44 0.51 5.33 15 12 N -0.74 -23.55 5.80 -337.60 -1.96 -25.51 15 13 C 0.20 6.25 6.48 38.10 0.25 6.50 15 14 C -0.16 -3.91 9.87 22.42 0.22 -3.69 15 15 C -0.11 -2.52 10.03 22.28 0.22 -2.30 15 16 C 0.02 0.56 7.29 22.35 0.16 0.72 15 17 F -0.15 -4.38 17.26 44.97 0.78 -3.61 15 18 C -0.12 -3.58 9.64 22.35 0.22 -3.36 15 19 C -0.14 -4.77 5.76 -19.75 -0.11 -4.88 15 20 C -0.05 -2.11 5.03 29.75 0.15 -1.96 15 21 H 0.27 15.18 8.31 -92.71 -0.77 14.41 15 22 H 0.06 2.40 3.32 -2.39 -0.01 2.39 15 23 H 0.05 2.19 8.14 -2.39 -0.02 2.17 15 24 H 0.41 10.21 8.86 -92.71 -0.82 9.39 15 25 H 0.16 2.77 8.06 -2.91 -0.02 2.74 15 26 H 0.16 2.74 8.06 -2.91 -0.02 2.72 15 27 H 0.14 3.88 8.06 -2.91 -0.02 3.85 15 28 H 0.06 2.54 8.11 -2.39 -0.02 2.52 15 29 H 0.07 2.62 8.12 -2.39 -0.02 2.60 15 Total: -1.00 -62.44 242.55 3.35 -59.09 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.27 Total: 13.91 kcal Atomic # 6 Polarization: -33.01 SS G_CDS: 2.29 Total: -30.72 kcal Atomic # 7 Polarization: -80.93 SS G_CDS: -1.66 Total: -82.59 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.78 Total: -3.61 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 1.67 Total: 43.92 kcal Total: -62.44 3.35 -59.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084768364.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.981 kcal (2) G-P(sol) polarization free energy of solvation -62.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds