Wall clock time and date at job start Mon Mar 30 2020 02:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.57596 * 299.99372 * 9 7 2 11 11 C 1.53420 * 109.57869 * 60.25154 * 9 7 2 12 12 N 1.46901 * 107.80754 * 182.87805 * 11 9 7 13 13 C 1.39920 * 119.00470 * 315.52438 * 12 11 9 14 14 C 1.39039 * 119.10752 * 193.19951 * 13 12 11 15 15 C 1.38244 * 120.01138 * 180.38881 * 14 13 12 16 16 F 1.35101 * 120.06887 * 179.97438 * 15 14 13 17 17 C 1.38545 * 119.85881 * 0.02562 * 15 14 13 18 18 C 1.38083 * 120.12965 * 359.90685 * 17 15 14 19 19 C 1.38522 * 120.34556 * 0.03180 * 18 17 15 20 20 C 1.50601 * 118.90441 * 180.16434 * 19 18 17 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.79934 * 302.58127 * 11 9 7 23 23 H 1.08994 * 109.80083 * 63.43676 * 11 9 7 24 24 H 0.96996 * 120.45570 * 135.45242 * 12 11 9 25 25 H 1.07992 * 119.99550 * 0.37327 * 14 13 12 26 26 H 1.08002 * 119.93337 * 179.97438 * 17 15 14 27 27 H 1.08000 * 119.82127 * 180.02562 * 18 17 15 28 28 H 1.09003 * 109.26890 * 80.34621 * 20 19 18 29 29 H 1.08997 * 109.24874 * 320.85045 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8771 -0.6801 -0.8889 11 6 4.0251 -0.4777 1.2557 12 7 5.4918 -0.4388 1.1826 13 6 6.1826 -1.5926 0.7961 14 6 7.5583 -1.6535 0.9883 15 6 8.2606 -2.7812 0.6058 16 9 9.5974 -2.8415 0.7916 17 6 7.5908 -3.8489 0.0308 18 6 6.2243 -3.7890 -0.1589 19 6 5.5136 -2.6630 0.2229 20 6 4.0238 -2.6338 0.0045 21 1 -0.4850 0.8401 0.0004 22 1 3.6285 0.5371 1.2902 23 1 3.7165 -1.0258 2.1458 24 1 5.9734 0.3751 1.3981 25 1 8.0783 -0.8197 1.4361 26 1 8.1383 -4.7304 -0.2688 27 1 5.7072 -4.6244 -0.6072 28 1 3.5320 -3.1873 0.8044 29 1 3.7917 -3.1017 -0.9522 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084768381.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:06 Heat of formation + Delta-G solvation = -22.729694 kcal Electronic energy + Delta-G solvation = -14629.605586 eV Core-core repulsion = 12045.524876 eV Total energy + Delta-G solvation = -2584.080710 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.63925 -39.55389 -35.97749 -33.47422 -32.07814 -29.81693 -29.26514 -25.11577 -24.16196 -22.49065 -21.57032 -18.98371 -17.56678 -16.97021 -16.65467 -15.34040 -15.21593 -14.97534 -14.42337 -14.08400 -13.68923 -13.21761 -12.97221 -12.72341 -12.56040 -12.26792 -11.61011 -11.22794 -11.02389 -10.55958 -10.31703 -10.05254 -9.70379 -9.38787 -9.20535 -8.69212 -8.26996 -7.03724 -6.20446 -4.20837 1.53419 1.78083 3.11166 3.26888 3.27483 3.83375 4.00037 4.26739 4.67034 5.07807 5.11076 5.30218 5.40911 5.65521 5.77121 5.82122 6.10228 6.24823 6.31402 6.40775 6.43845 6.53401 6.61795 6.91228 6.97042 7.09617 7.33070 7.55903 7.72808 8.13066 8.39471 8.84264 9.40178 10.92502 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.053681 B = 0.007946 C = 0.007124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.470121 B = 3522.982142 C = 3929.361458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.071 3.929 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.263 1.263 6 H -0.293 1.293 7 C -0.514 4.514 8 H 0.079 0.921 9 C 0.001 3.999 10 H 0.035 0.965 11 C 0.112 3.888 12 N -0.747 5.747 13 C 0.251 3.749 14 C -0.239 4.239 15 C 0.125 3.875 16 F -0.149 7.149 17 C -0.216 4.216 18 C -0.054 4.054 19 C -0.150 4.150 20 C -0.056 4.056 21 H 0.266 0.734 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.393 0.607 25 H 0.125 0.875 26 H 0.124 0.876 27 H 0.128 0.872 28 H 0.070 0.930 29 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.570 -3.083 1.463 13.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.131 4.131 3 Si 0.708 3.292 4 H -0.205 1.205 5 H -0.188 1.188 6 H -0.220 1.220 7 C -0.553 4.553 8 H 0.097 0.903 9 C -0.018 4.018 10 H 0.053 0.947 11 C -0.010 4.010 12 N -0.374 5.374 13 C 0.145 3.855 14 C -0.263 4.263 15 C 0.106 3.894 16 F -0.127 7.127 17 C -0.237 4.237 18 C -0.073 4.073 19 C -0.154 4.154 20 C -0.094 4.094 21 H 0.076 0.924 22 H 0.082 0.918 23 H 0.079 0.921 24 H 0.226 0.774 25 H 0.143 0.857 26 H 0.142 0.858 27 H 0.146 0.854 28 H 0.088 0.912 29 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.206 -2.968 1.484 12.649 hybrid contribution 0.834 1.381 0.212 1.627 sum 13.040 -1.586 1.696 13.245 Atomic orbital electron populations 1.69878 1.06217 1.27112 1.50014 1.25042 0.94739 0.98937 0.94414 0.86982 0.80349 0.83903 0.77926 1.20486 1.18793 1.21989 1.20974 0.88106 0.94787 1.51402 0.90305 1.19451 0.96890 0.92267 0.93232 0.94719 1.22412 0.76633 1.00926 1.01067 1.45114 1.07285 1.10529 1.74439 1.17335 0.89568 0.87631 0.90951 1.20457 0.93594 0.99844 1.12400 1.17281 0.76544 0.95449 1.00151 1.91439 1.31061 1.96825 1.93424 1.20713 0.95315 0.99180 1.08524 1.20727 0.92605 0.96922 0.97017 1.19845 0.97855 0.94201 1.03542 1.20319 0.88076 0.99328 1.01632 0.92438 0.91822 0.92093 0.77375 0.85668 0.85775 0.85403 0.91171 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.24 13.96 55.43 0.77 -25.47 15 2 C 0.07 1.95 5.45 -17.82 -0.10 1.85 15 3 Si 0.88 20.61 24.41 -169.99 -4.15 16.46 15 4 H -0.28 -6.24 6.84 56.52 0.39 -5.85 15 5 H -0.26 -5.99 6.53 56.52 0.37 -5.62 15 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 15 7 C -0.51 -13.64 9.13 -34.44 -0.31 -13.95 15 8 H 0.08 2.25 7.99 -52.49 -0.42 1.83 15 9 C 0.00 0.03 1.84 -91.65 -0.17 -0.14 15 10 H 0.03 0.82 7.20 -51.93 -0.37 0.45 15 11 C 0.11 2.30 5.89 -3.61 -0.02 2.28 15 12 N -0.75 -13.14 5.79 -58.11 -0.34 -13.48 15 13 C 0.25 4.38 6.48 -83.72 -0.54 3.84 15 14 C -0.24 -3.76 9.85 -39.28 -0.39 -4.14 15 15 C 0.13 1.94 7.30 -39.47 -0.29 1.65 15 16 F -0.15 -2.25 17.27 2.25 0.04 -2.21 15 17 C -0.22 -3.13 10.02 -39.53 -0.40 -3.52 15 18 C -0.05 -0.81 9.66 -39.53 -0.38 -1.19 15 19 C -0.15 -2.64 5.76 -104.42 -0.60 -3.24 15 20 C -0.06 -1.09 5.03 -28.03 -0.14 -1.23 15 21 H 0.27 7.32 8.31 -40.82 -0.34 6.98 15 22 H 0.06 1.35 3.32 -51.93 -0.17 1.17 15 23 H 0.06 1.24 8.14 -51.93 -0.42 0.82 15 24 H 0.39 5.88 8.86 -40.82 -0.36 5.52 15 25 H 0.13 1.73 8.06 -52.49 -0.42 1.31 15 26 H 0.12 1.50 8.06 -52.49 -0.42 1.08 15 27 H 0.13 1.62 8.06 -52.49 -0.42 1.20 15 28 H 0.07 1.35 8.11 -51.93 -0.42 0.93 15 29 H 0.07 1.30 8.12 -51.93 -0.42 0.88 15 LS Contribution 242.54 15.07 3.66 3.66 Total: -1.00 -28.32 242.54 -6.40 -34.72 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -3.04 Total: 4.13 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -3.34 Total: -17.81 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.44 Total: -38.95 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.15 Total: 16.46 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -28.32 -6.40 -34.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084768381.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.991 kcal (2) G-P(sol) polarization free energy of solvation -28.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds