Wall clock time and date at job start Mon Mar 30 2020 02:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00115 * 2 1 4 4 H 1.48499 * 109.47568 * 270.00644 * 3 2 1 5 5 H 1.48504 * 109.46856 * 30.00751 * 3 2 1 6 6 H 1.48501 * 109.47169 * 150.00390 * 3 2 1 7 7 C 1.37877 * 119.99963 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00129 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99879 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.67778 * 59.68162 * 9 7 2 11 11 C 1.53432 * 109.57604 * 299.35921 * 9 7 2 12 12 N 1.46911 * 107.79774 * 176.98315 * 11 9 7 13 13 C 1.39925 * 118.92144 * 44.66117 * 12 11 9 14 14 C 1.39040 * 119.10687 * 166.64118 * 13 12 11 15 15 C 1.38244 * 120.01117 * 179.47463 * 14 13 12 16 16 F 1.35101 * 120.06890 * 180.30407 * 15 14 13 17 17 C 1.38535 * 119.85762 * 0.53839 * 15 14 13 18 18 C 1.38092 * 120.13177 * 359.56332 * 17 15 14 19 19 C 1.38514 * 120.33937 * 0.20084 * 18 17 15 20 20 C 1.50611 * 118.89777 * 179.79176 * 19 18 17 21 21 H 0.97003 * 120.00172 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.79283 * 296.56131 * 11 9 7 23 23 H 1.08999 * 109.79036 * 57.35444 * 11 9 7 24 24 H 0.96998 * 120.53995 * 224.68498 * 12 11 9 25 25 H 1.07992 * 119.99508 * 359.72894 * 14 13 12 26 26 H 1.08002 * 119.93653 * 179.85049 * 17 15 14 27 27 H 1.08002 * 119.82423 * 180.17515 * 18 17 15 28 28 H 1.08994 * 109.29987 * 279.81887 * 20 19 18 29 29 H 1.08993 * 109.30120 * 39.20239 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6184 -2.5578 -0.8862 11 6 0.3806 -2.5903 1.2597 12 7 -0.3892 -3.8392 1.1845 13 6 0.2628 -5.0134 0.7919 14 6 -0.3713 -6.2358 0.9843 15 6 0.2512 -7.4067 0.5934 16 9 -0.3665 -8.5946 0.7742 17 6 1.5116 -7.3597 0.0205 18 6 2.1423 -6.1458 -0.1687 19 6 1.5228 -4.9681 0.2159 20 6 2.2422 -3.6628 -0.0011 21 1 -0.4850 0.8401 0.0004 22 1 1.0147 -2.6002 2.1463 23 1 -0.2987 -1.7389 1.3014 24 1 -1.3342 -3.8497 1.4031 25 1 -1.3519 -6.2703 1.4353 26 1 2.0001 -8.2738 -0.2831 27 1 3.1237 -6.1147 -0.6184 28 1 2.9706 -3.5160 0.7962 29 1 2.7619 -3.6928 -0.9587 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084768383.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:08 Heat of formation + Delta-G solvation = -46.608178 kcal Electronic energy + Delta-G solvation = -14538.521621 eV Core-core repulsion = 11953.405463 eV Total energy + Delta-G solvation = -2585.116158 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.80385 -40.76455 -37.26529 -35.04671 -33.67042 -30.79447 -30.49520 -26.85694 -25.43932 -23.71226 -23.19267 -20.46413 -18.84571 -18.37753 -17.73615 -16.52401 -16.48820 -16.39199 -16.03857 -15.42841 -14.98485 -14.41887 -14.31275 -14.08421 -13.86779 -13.51180 -12.87763 -12.79569 -12.47612 -12.28305 -12.07305 -11.75157 -11.15537 -11.12176 -10.79135 -10.44703 -9.48689 -8.27181 -8.12332 -6.26683 0.33218 0.61860 1.44064 1.46039 1.55470 2.42596 2.66437 2.80090 3.17226 3.50557 3.94295 4.15783 4.21819 4.46568 4.59762 4.61872 4.69914 4.97133 5.04835 5.14985 5.17516 5.29662 5.39291 5.56040 5.66529 5.80223 5.89420 5.98670 6.25652 6.51414 6.83811 7.01629 7.42318 8.92012 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.066407 B = 0.006822 C = 0.006304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.541136 B = 4103.544977 C = 4440.700559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.016 3.984 3 Si 0.957 3.043 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.532 4.532 8 H 0.060 0.940 9 C 0.033 3.967 10 H -0.004 1.004 11 C 0.134 3.866 12 N -0.742 5.742 13 C 0.232 3.768 14 C -0.242 4.242 15 C 0.121 3.879 16 F -0.146 7.146 17 C -0.212 4.212 18 C -0.049 4.049 19 C -0.175 4.175 20 C -0.058 4.058 21 H 0.263 0.737 22 H 0.031 0.969 23 H 0.085 0.915 24 H 0.401 0.599 25 H 0.139 0.861 26 H 0.153 0.847 27 H 0.152 0.848 28 H 0.062 0.938 29 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.620 -9.994 1.518 10.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.183 4.183 3 Si 0.783 3.217 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.570 4.570 8 H 0.078 0.922 9 C 0.014 3.986 10 H 0.015 0.985 11 C 0.010 3.990 12 N -0.370 5.370 13 C 0.126 3.874 14 C -0.266 4.266 15 C 0.101 3.899 16 F -0.125 7.125 17 C -0.232 4.232 18 C -0.067 4.067 19 C -0.180 4.180 20 C -0.095 4.095 21 H 0.072 0.928 22 H 0.049 0.951 23 H 0.103 0.897 24 H 0.236 0.764 25 H 0.157 0.843 26 H 0.171 0.829 27 H 0.170 0.830 28 H 0.080 0.920 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.552 -9.714 1.552 9.959 hybrid contribution -0.438 0.921 0.085 1.023 sum 1.115 -8.793 1.637 9.013 Atomic orbital electron populations 1.69964 1.07167 1.27462 1.51085 1.25741 0.95682 1.02432 0.94449 0.85567 0.78825 0.79215 0.78126 1.20418 1.20967 1.19074 1.21478 0.93359 0.91294 1.50904 0.92154 1.18879 0.93496 0.92926 0.93315 0.98536 1.21664 0.95357 0.84473 0.97485 1.45071 1.11661 1.06258 1.73994 1.17620 0.91894 0.86352 0.91489 1.20591 1.03656 0.90095 1.12267 1.17432 0.92460 0.79871 1.00145 1.91443 1.82898 1.44670 1.93480 1.20992 0.94852 0.99879 1.07508 1.20960 0.99768 0.89829 0.96174 1.19853 0.95912 0.96820 1.05398 1.20329 0.97521 0.90657 1.00993 0.92790 0.95121 0.89654 0.76406 0.84329 0.82946 0.83030 0.91964 0.91473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.46 11.37 21.45 0.24 -50.22 15 2 C 0.02 0.84 5.30 84.65 0.45 1.29 15 3 Si 0.96 41.71 29.54 68.60 2.03 43.74 15 4 H -0.28 -11.99 7.11 99.48 0.71 -11.28 15 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 15 6 H -0.27 -11.22 7.11 99.48 0.71 -10.52 15 7 C -0.53 -27.97 8.54 25.60 0.22 -27.75 15 8 H 0.06 3.09 7.75 -2.91 -0.02 3.06 15 9 C 0.03 1.62 2.26 -11.44 -0.03 1.59 15 10 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 15 11 C 0.13 6.15 6.20 86.45 0.54 6.68 15 12 N -0.74 -28.87 5.80 -337.72 -1.96 -30.83 15 13 C 0.23 8.63 6.47 38.13 0.25 8.87 15 14 C -0.24 -7.86 9.85 22.46 0.22 -7.64 15 15 C 0.12 3.68 7.30 22.34 0.16 3.84 15 16 F -0.15 -4.29 17.27 44.97 0.78 -3.51 15 17 C -0.21 -5.85 10.02 22.31 0.22 -5.63 15 18 C -0.05 -1.45 9.66 22.30 0.22 -1.23 15 19 C -0.18 -6.44 5.76 -19.73 -0.11 -6.56 15 20 C -0.06 -2.36 5.02 29.77 0.15 -2.21 15 21 H 0.26 13.79 8.31 -92.71 -0.77 13.02 15 22 H 0.03 1.40 8.14 -2.39 -0.02 1.38 15 23 H 0.09 4.30 6.11 -2.39 -0.01 4.29 15 24 H 0.40 13.64 8.86 -92.71 -0.82 12.81 15 25 H 0.14 3.98 8.06 -2.91 -0.02 3.95 15 26 H 0.15 3.29 8.06 -2.91 -0.02 3.27 15 27 H 0.15 3.63 8.06 -2.91 -0.02 3.60 15 28 H 0.06 2.49 8.11 -2.39 -0.02 2.47 15 29 H 0.07 2.60 8.12 -2.39 -0.02 2.58 15 Total: -1.00 -56.31 249.40 3.72 -52.60 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.34 Total: 16.95 kcal Atomic # 6 Polarization: -31.01 SS G_CDS: 2.28 Total: -28.73 kcal Atomic # 7 Polarization: -79.33 SS G_CDS: -1.71 Total: -81.04 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.78 Total: -3.51 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -56.31 3.72 -52.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084768383.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.989 kcal (2) G-P(sol) polarization free energy of solvation -56.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds