Wall clock time and date at job start Mon Mar 30 2020 02:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99685 * 2 1 4 4 H 1.48499 * 109.47253 * 274.98552 * 3 2 1 5 5 H 1.48495 * 109.47506 * 34.99343 * 3 2 1 6 6 H 1.48501 * 109.46886 * 154.99130 * 3 2 1 7 7 C 1.37875 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99416 * 189.56496 * 7 2 1 9 9 C 1.50699 * 120.00028 * 9.56690 * 7 2 1 10 10 H 1.09000 * 109.80688 * 304.69156 * 9 7 2 11 11 C 1.53385 * 109.76962 * 65.45669 * 9 7 2 12 12 N 1.46429 * 108.65088 * 187.87238 * 11 9 7 13 13 C 1.39579 * 113.12686 * 306.74596 * 12 11 9 14 14 C 1.39800 * 117.64910 * 199.88754 * 13 12 11 15 15 F 1.35098 * 119.81234 * 0.25251 * 14 13 12 16 16 C 1.37963 * 120.38231 * 180.30496 * 14 13 12 17 17 C 1.38343 * 119.92224 * 359.97438 * 16 14 13 18 18 C 1.38008 * 119.90059 * 359.87574 * 17 16 14 19 19 C 1.38267 * 122.96144 * 19.96236 * 13 12 11 20 20 C 1.50807 * 122.02196 * 359.45758 * 19 13 12 21 21 H 0.97003 * 119.99559 * 0.02562 * 1 2 3 22 22 H 1.08991 * 109.60524 * 68.11657 * 11 9 7 23 23 H 1.08999 * 109.60026 * 307.62025 * 11 9 7 24 24 H 1.00898 * 111.00190 * 72.29680 * 12 11 9 25 25 H 1.07999 * 120.03998 * 180.02562 * 16 14 13 26 26 H 1.07997 * 120.04698 * 179.85169 * 17 16 14 27 27 H 1.08000 * 119.73555 * 179.97438 * 18 17 16 28 28 H 1.09004 * 109.43520 * 135.65128 * 20 19 13 29 29 H 1.08998 * 109.43497 * 255.53286 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3912 2.1074 -1.3948 5 1 1.5034 2.6200 0.8029 6 1 3.5955 1.4121 0.5919 7 6 2.0046 -1.1940 0.0005 8 1 3.0733 -1.2004 0.1560 9 6 1.2668 -2.4902 -0.2158 10 1 0.4626 -2.5837 0.5141 11 6 0.6861 -2.5260 -1.6350 12 7 -0.1792 -3.7009 -1.7575 13 6 0.4544 -4.8890 -1.3898 14 6 -0.0957 -6.0879 -1.8530 15 9 -1.1993 -6.0637 -2.6319 16 6 0.4813 -7.2956 -1.5185 17 6 1.6111 -7.3231 -0.7207 18 6 2.1595 -6.1421 -0.2636 19 6 1.5862 -4.9237 -0.5963 20 6 2.2347 -3.6668 -0.0729 21 1 -0.4850 0.8401 -0.0004 22 1 1.4970 -2.5916 -2.3604 23 1 0.1036 -1.6224 -1.8147 24 1 -1.0368 -3.5737 -1.2415 25 1 0.0519 -8.2184 -1.8798 26 1 2.0630 -8.2675 -0.4556 27 1 3.0413 -6.1667 0.3595 28 1 2.4899 -3.8011 0.9783 29 1 3.1412 -3.4622 -0.6425 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084768400.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:11 Heat of formation + Delta-G solvation = -47.416486 kcal Electronic energy + Delta-G solvation = -14726.793961 eV Core-core repulsion = 12141.642751 eV Total energy + Delta-G solvation = -2585.151209 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.69966 -40.94083 -37.60258 -35.04908 -33.55525 -31.20620 -30.11213 -27.03551 -25.33201 -23.48716 -23.06370 -20.75367 -18.64164 -18.29055 -17.54342 -17.27033 -16.53497 -16.42310 -15.70220 -15.45533 -14.81649 -14.65234 -14.32134 -13.91245 -13.64351 -13.20807 -12.88989 -12.77055 -12.64337 -12.27403 -12.15848 -11.99946 -11.57024 -11.03790 -10.56008 -10.30370 -9.50993 -8.83649 -8.19061 -6.27554 0.28164 0.35441 1.41014 1.43463 1.52699 2.40875 2.68301 3.08880 3.16529 3.43682 3.89606 4.06690 4.29634 4.32320 4.46179 4.63421 4.64725 4.82580 4.96378 5.06598 5.18961 5.23978 5.43063 5.48217 5.59090 5.69950 5.77060 5.90907 6.07695 6.33253 6.46507 6.81835 7.39673 8.89702 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.049531 B = 0.007858 C = 0.006980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.169565 B = 3562.525666 C = 4010.333887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.018 3.982 3 Si 0.954 3.046 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.533 4.533 8 H 0.060 0.940 9 C 0.017 3.983 10 H 0.001 0.999 11 C 0.083 3.917 12 N -0.646 5.646 13 C 0.063 3.937 14 C 0.059 3.941 15 F -0.148 7.148 16 C -0.143 4.143 17 C -0.103 4.103 18 C -0.114 4.114 19 C -0.109 4.109 20 C -0.066 4.066 21 H 0.263 0.737 22 H 0.050 0.950 23 H 0.066 0.934 24 H 0.350 0.650 25 H 0.161 0.839 26 H 0.171 0.829 27 H 0.149 0.851 28 H 0.074 0.926 29 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.143 -12.606 -0.951 13.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.182 4.182 3 Si 0.780 3.220 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.572 4.572 8 H 0.078 0.922 9 C -0.003 4.003 10 H 0.019 0.981 11 C -0.045 4.045 12 N -0.273 5.273 13 C -0.036 4.036 14 C 0.037 3.963 15 F -0.127 7.127 16 C -0.162 4.162 17 C -0.122 4.122 18 C -0.133 4.133 19 C -0.112 4.112 20 C -0.103 4.103 21 H 0.072 0.928 22 H 0.068 0.932 23 H 0.084 0.916 24 H 0.176 0.824 25 H 0.178 0.822 26 H 0.188 0.812 27 H 0.167 0.833 28 H 0.092 0.908 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.030 -12.496 -1.644 12.963 hybrid contribution -0.210 1.538 0.631 1.675 sum 2.821 -10.959 -1.013 11.361 Atomic orbital electron populations 1.70072 1.07365 1.27576 1.50579 1.25743 0.95547 1.02511 0.94386 0.85595 0.78958 0.79352 0.78098 1.20199 1.21172 1.18955 1.21403 0.94382 0.91640 1.49741 0.92216 1.19210 0.94560 0.93363 0.93169 0.98064 1.21948 0.94805 0.89800 0.97958 1.57162 1.09183 1.02170 1.58789 1.18891 0.97248 0.90189 0.97319 1.17947 0.87423 0.94024 0.96877 1.91411 1.51149 1.97415 1.72695 1.21281 0.98019 0.95973 1.00880 1.21262 0.94877 0.99290 0.96744 1.21392 1.00617 0.90845 1.00411 1.20289 0.97127 0.97305 0.96514 1.20587 0.98345 0.91068 1.00333 0.92837 0.93189 0.91582 0.82379 0.82182 0.81167 0.83341 0.90799 0.91106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.24 12.22 21.45 0.26 -51.98 15 2 C 0.02 0.96 5.14 84.65 0.44 1.39 15 3 Si 0.95 42.64 29.55 68.60 2.03 44.67 15 4 H -0.28 -12.13 7.11 99.48 0.71 -11.42 15 5 H -0.29 -12.65 7.11 99.48 0.71 -11.95 15 6 H -0.27 -11.40 7.11 99.48 0.71 -10.70 15 7 C -0.53 -28.53 8.47 25.60 0.22 -28.32 15 8 H 0.06 3.11 7.77 -2.91 -0.02 3.08 15 9 C 0.02 0.83 2.17 -11.40 -0.02 0.81 15 10 H 0.00 0.07 8.11 -2.39 -0.02 0.05 15 11 C 0.08 4.00 5.81 86.52 0.50 4.50 15 12 N -0.65 -27.94 6.24 -338.80 -2.11 -30.05 15 13 C 0.06 2.45 6.13 38.29 0.23 2.69 15 14 C 0.06 2.00 7.29 22.58 0.16 2.16 15 15 F -0.15 -5.30 16.96 44.97 0.76 -4.54 15 16 C -0.14 -3.64 10.01 22.23 0.22 -3.42 15 17 C -0.10 -2.30 10.05 22.24 0.22 -2.08 15 18 C -0.11 -3.11 9.63 22.33 0.21 -2.89 15 19 C -0.11 -3.96 5.74 -19.71 -0.11 -4.08 15 20 C -0.07 -2.68 5.10 29.89 0.15 -2.53 15 21 H 0.26 14.27 8.31 -92.71 -0.77 13.50 15 22 H 0.05 2.39 8.11 -2.39 -0.02 2.37 15 23 H 0.07 3.52 6.82 -2.39 -0.02 3.50 15 24 H 0.35 15.10 8.84 -89.70 -0.79 14.30 15 25 H 0.16 3.04 8.06 -2.91 -0.02 3.01 15 26 H 0.17 2.30 8.06 -2.91 -0.02 2.28 15 27 H 0.15 3.23 8.06 -2.91 -0.02 3.21 15 28 H 0.07 2.81 8.14 -2.39 -0.02 2.79 15 29 H 0.07 2.81 8.08 -2.39 -0.02 2.79 15 Total: -1.00 -60.37 250.18 3.54 -56.83 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.37 Total: 16.84 kcal Atomic # 6 Polarization: -33.99 SS G_CDS: 2.23 Total: -31.76 kcal Atomic # 7 Polarization: -80.18 SS G_CDS: -1.85 Total: -82.03 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 0.76 Total: -4.54 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -60.37 3.54 -56.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084768400.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.413 kcal (2) G-P(sol) polarization free energy of solvation -60.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds