Wall clock time and date at job start Mon Mar 30 2020 02:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.76528 * 59.99828 * 9 7 2 11 11 C 1.53389 * 109.77141 * 299.26573 * 9 7 2 12 12 N 1.46428 * 108.66217 * 172.16884 * 11 9 7 13 13 C 1.39574 * 113.12367 * 53.29402 * 12 11 9 14 14 C 1.39801 * 117.65551 * 159.90887 * 13 12 11 15 15 F 1.35103 * 119.81176 * 359.67069 * 14 13 12 16 16 C 1.37962 * 120.37955 * 179.65027 * 14 13 12 17 17 C 1.38334 * 119.93008 * 0.02562 * 16 14 13 18 18 C 1.38025 * 119.89654 * 0.14490 * 17 16 14 19 19 C 1.38267 * 122.96173 * 339.83781 * 13 12 11 20 20 C 1.50840 * 122.02834 * 0.78422 * 19 13 12 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.60363 * 291.92719 * 11 9 7 23 23 H 1.08999 * 109.60077 * 52.25388 * 11 9 7 24 24 H 1.00900 * 110.99847 * 287.75238 * 12 11 9 25 25 H 1.08009 * 120.03745 * 179.97438 * 16 14 13 26 26 H 1.07995 * 120.05319 * 180.12890 * 17 16 14 27 27 H 1.07992 * 119.73292 * 180.02562 * 18 17 16 28 28 H 1.09007 * 109.49047 * 224.22414 * 20 19 13 29 29 H 1.09000 * 109.39930 * 104.33316 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6222 -2.5617 -0.8886 11 6 0.3810 -2.5959 1.2590 12 7 -0.4777 -3.7766 1.1458 13 6 0.2328 -4.9471 0.8750 14 6 -0.3889 -6.1653 1.1649 15 9 -1.6317 -6.1758 1.6946 16 6 0.2593 -7.3568 0.9129 17 6 1.5320 -7.3489 0.3707 18 6 2.1511 -6.1486 0.0860 19 6 1.5070 -4.9466 0.3381 20 6 2.2394 -3.6675 0.0174 21 1 -0.4850 0.8401 0.0004 22 1 1.0189 -2.6904 2.1377 23 1 -0.2341 -1.7005 1.3482 24 1 -1.2062 -3.6297 0.4633 25 1 -0.2260 -8.2947 1.1394 26 1 2.0404 -8.2805 0.1707 27 1 3.1445 -6.1456 -0.3376 28 1 2.7145 -3.7557 -0.9598 29 1 3.0013 -3.4867 0.7756 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084768402.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:14 Heat of formation + Delta-G solvation = -30.597418 kcal Electronic energy + Delta-G solvation = -14739.109996 eV Core-core repulsion = 12154.688117 eV Total energy + Delta-G solvation = -2584.421880 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.30857 -39.46790 -36.06956 -33.22616 -31.90814 -29.55239 -28.70917 -25.19760 -23.62469 -21.90376 -21.69395 -19.06862 -16.97341 -16.57109 -16.09294 -15.82456 -15.09617 -14.61539 -14.32721 -13.75546 -13.19179 -13.07399 -12.85216 -12.27433 -11.93253 -11.74129 -11.40582 -11.01612 -10.92102 -10.66674 -10.41971 -10.21403 -9.61767 -9.31270 -8.76254 -8.45351 -8.19235 -7.27958 -6.13418 -4.19211 1.57600 1.65993 3.25851 3.31307 3.33320 3.96713 4.33424 4.60168 4.88601 5.14264 5.18534 5.30647 5.55199 5.66247 6.01682 6.17590 6.24592 6.39402 6.43966 6.61211 6.67634 6.78225 6.89485 7.12762 7.20099 7.39394 7.66397 7.80766 7.85189 8.12568 8.30713 8.82895 9.45914 10.93490 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.050068 B = 0.007885 C = 0.006945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.106515 B = 3550.257718 C = 4030.768593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.063 3.937 3 Si 0.896 3.104 4 H -0.287 1.287 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.514 4.514 8 H 0.058 0.942 9 C 0.019 3.981 10 H 0.030 0.970 11 C 0.059 3.941 12 N -0.643 5.643 13 C 0.098 3.902 14 C 0.076 3.924 15 F -0.139 7.139 16 C -0.155 4.155 17 C -0.124 4.124 18 C -0.119 4.119 19 C -0.089 4.089 20 C -0.075 4.075 21 H 0.264 0.736 22 H 0.051 0.949 23 H 0.114 0.886 24 H 0.354 0.646 25 H 0.127 0.873 26 H 0.123 0.877 27 H 0.121 0.879 28 H 0.066 0.934 29 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.521 -10.322 0.357 10.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.724 3.276 4 H -0.212 1.212 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.553 4.553 8 H 0.076 0.924 9 C -0.001 4.001 10 H 0.048 0.952 11 C -0.068 4.068 12 N -0.270 5.270 13 C -0.002 4.002 14 C 0.054 3.946 15 F -0.118 7.118 16 C -0.174 4.174 17 C -0.143 4.143 18 C -0.138 4.138 19 C -0.092 4.092 20 C -0.112 4.112 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.132 0.868 24 H 0.181 0.819 25 H 0.145 0.855 26 H 0.141 0.859 27 H 0.139 0.861 28 H 0.084 0.916 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.241 -10.207 1.044 10.335 hybrid contribution 0.437 0.985 -0.704 1.287 sum 1.678 -9.223 0.340 9.380 Atomic orbital electron populations 1.69822 1.05935 1.27017 1.50184 1.24991 0.94923 0.99290 0.94713 0.86587 0.79567 0.82787 0.78682 1.21221 1.20157 1.20248 1.21033 0.92959 0.90024 1.51282 0.92371 1.19295 0.93762 0.92225 0.94811 0.95230 1.22430 0.95787 0.90130 0.98449 1.57209 1.16137 1.03064 1.50620 1.18721 0.93863 0.90536 0.97105 1.17689 0.81709 0.93392 1.01809 1.91436 1.38988 1.97340 1.84041 1.20830 0.96519 0.96343 1.03701 1.20729 0.94578 0.97938 1.01063 1.21073 0.99901 0.91676 1.01103 1.20330 0.95112 0.96780 0.97015 1.20785 0.98609 0.91192 1.00660 0.92622 0.93033 0.86791 0.81865 0.85523 0.85885 0.86055 0.91587 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.34 11.37 55.43 0.63 -23.71 15 2 C 0.06 1.66 5.29 -17.82 -0.09 1.56 15 3 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 15 4 H -0.29 -6.56 7.11 56.52 0.40 -6.16 15 5 H -0.28 -6.28 7.11 56.52 0.40 -5.87 15 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 7 C -0.51 -13.47 8.54 -34.44 -0.29 -13.77 15 8 H 0.06 1.49 7.75 -52.49 -0.41 1.09 15 9 C 0.02 0.45 2.30 -91.55 -0.21 0.24 15 10 H 0.03 0.78 8.14 -51.93 -0.42 0.35 15 11 C 0.06 1.38 5.77 -3.88 -0.02 1.36 15 12 N -0.64 -13.55 6.24 -58.44 -0.36 -13.91 15 13 C 0.10 1.94 6.13 -83.74 -0.51 1.42 15 14 C 0.08 1.36 7.29 -39.10 -0.29 1.07 15 15 F -0.14 -2.57 16.96 2.25 0.04 -2.53 15 16 C -0.15 -2.31 10.01 -39.65 -0.40 -2.70 15 17 C -0.12 -1.72 10.05 -39.62 -0.40 -2.12 15 18 C -0.12 -1.85 9.63 -39.49 -0.38 -2.23 15 19 C -0.09 -1.68 5.74 -104.38 -0.60 -2.28 15 20 C -0.08 -1.54 5.10 -27.79 -0.14 -1.68 15 21 H 0.26 6.93 8.31 -40.82 -0.34 6.59 15 22 H 0.05 1.22 8.11 -51.93 -0.42 0.80 15 23 H 0.11 2.93 6.02 -51.93 -0.31 2.62 15 24 H 0.35 7.25 8.84 -39.29 -0.35 6.91 15 25 H 0.13 1.55 8.06 -52.48 -0.42 1.13 15 26 H 0.12 1.30 8.06 -52.49 -0.42 0.88 15 27 H 0.12 1.61 8.06 -52.49 -0.42 1.19 15 28 H 0.07 1.27 8.14 -51.93 -0.42 0.85 15 29 H 0.07 1.43 8.08 -51.93 -0.42 1.01 15 LS Contribution 248.84 15.07 3.75 3.75 Total: -1.00 -27.05 248.84 -7.46 -34.51 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -3.16 Total: 5.47 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -3.34 Total: -19.11 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.27 Total: -37.62 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.04 Total: -2.53 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -27.05 -7.46 -34.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084768402.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.912 kcal (2) G-P(sol) polarization free energy of solvation -27.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds