Wall clock time and date at job start Mon Mar 30 2020 02:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.76528 * 59.99828 * 9 7 2 11 11 C 1.53389 * 109.77141 * 299.26573 * 9 7 2 12 12 N 1.46428 * 108.66217 * 172.16884 * 11 9 7 13 13 C 1.39574 * 113.12367 * 53.29402 * 12 11 9 14 14 C 1.39801 * 117.65551 * 159.90887 * 13 12 11 15 15 F 1.35103 * 119.81176 * 359.67069 * 14 13 12 16 16 C 1.37962 * 120.37955 * 179.65027 * 14 13 12 17 17 C 1.38334 * 119.93008 * 0.02562 * 16 14 13 18 18 C 1.38025 * 119.89654 * 0.14490 * 17 16 14 19 19 C 1.38267 * 122.96173 * 339.83781 * 13 12 11 20 20 C 1.50840 * 122.02834 * 0.78422 * 19 13 12 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.60363 * 291.92719 * 11 9 7 23 23 H 1.08999 * 109.60077 * 52.25388 * 11 9 7 24 24 H 1.00900 * 110.99847 * 287.75238 * 12 11 9 25 25 H 1.08009 * 120.03745 * 179.97438 * 16 14 13 26 26 H 1.07995 * 120.05319 * 180.12890 * 17 16 14 27 27 H 1.07992 * 119.73292 * 180.02562 * 18 17 16 28 28 H 1.09007 * 109.49047 * 224.22414 * 20 19 13 29 29 H 1.09000 * 109.39930 * 104.33316 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6222 -2.5617 -0.8886 11 6 0.3810 -2.5959 1.2590 12 7 -0.4777 -3.7766 1.1458 13 6 0.2328 -4.9471 0.8750 14 6 -0.3889 -6.1653 1.1649 15 9 -1.6317 -6.1758 1.6946 16 6 0.2593 -7.3568 0.9129 17 6 1.5320 -7.3489 0.3707 18 6 2.1511 -6.1486 0.0860 19 6 1.5070 -4.9466 0.3381 20 6 2.2394 -3.6675 0.0174 21 1 -0.4850 0.8401 0.0004 22 1 1.0189 -2.6904 2.1377 23 1 -0.2341 -1.7005 1.3482 24 1 -1.2062 -3.6297 0.4633 25 1 -0.2260 -8.2947 1.1394 26 1 2.0404 -8.2805 0.1707 27 1 3.1445 -6.1456 -0.3376 28 1 2.7145 -3.7557 -0.9598 29 1 3.0013 -3.4867 0.7756 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084768402.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:14 Heat of formation + Delta-G solvation = -46.085160 kcal Electronic energy + Delta-G solvation = -14739.781595 eV Core-core repulsion = 12154.688117 eV Total energy + Delta-G solvation = -2585.093479 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.69452 -40.92936 -37.60278 -35.04316 -33.55957 -31.15602 -30.10843 -27.04368 -25.30536 -23.47169 -23.06021 -20.73918 -18.63745 -18.25734 -17.54910 -17.27492 -16.51019 -16.45158 -15.67897 -15.45267 -14.80360 -14.63172 -14.30455 -13.93921 -13.61435 -13.19514 -12.84062 -12.76349 -12.62617 -12.23799 -12.15507 -12.00324 -11.52980 -11.09191 -10.57834 -10.25738 -9.51051 -8.81715 -8.15609 -6.28586 0.28290 0.35811 1.43235 1.43899 1.51705 2.41097 2.68486 3.09877 3.19375 3.44849 3.89793 4.07124 4.30276 4.34525 4.47189 4.63654 4.65224 4.84090 4.98055 5.11673 5.19143 5.26567 5.44481 5.47945 5.59733 5.72542 5.81236 5.92757 6.09247 6.35787 6.49654 6.80499 7.39644 8.89988 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.050068 B = 0.007885 C = 0.006945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.106515 B = 3550.257718 C = 4030.768593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.015 3.985 3 Si 0.959 3.041 4 H -0.286 1.286 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.534 4.534 8 H 0.060 0.940 9 C 0.018 3.982 10 H -0.003 1.003 11 C 0.076 3.924 12 N -0.646 5.646 13 C 0.063 3.937 14 C 0.058 3.942 15 F -0.148 7.148 16 C -0.143 4.143 17 C -0.104 4.104 18 C -0.114 4.114 19 C -0.110 4.110 20 C -0.067 4.067 21 H 0.263 0.737 22 H 0.041 0.959 23 H 0.085 0.915 24 H 0.350 0.650 25 H 0.161 0.839 26 H 0.171 0.829 27 H 0.149 0.851 28 H 0.075 0.925 29 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.028 -12.428 0.149 12.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.184 4.184 3 Si 0.784 3.216 4 H -0.211 1.211 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.572 4.572 8 H 0.078 0.922 9 C -0.002 4.002 10 H 0.015 0.985 11 C -0.052 4.052 12 N -0.273 5.273 13 C -0.037 4.037 14 C 0.036 3.964 15 F -0.127 7.127 16 C -0.161 4.161 17 C -0.122 4.122 18 C -0.133 4.133 19 C -0.113 4.113 20 C -0.104 4.104 21 H 0.072 0.928 22 H 0.060 0.940 23 H 0.103 0.897 24 H 0.176 0.824 25 H 0.178 0.822 26 H 0.188 0.812 27 H 0.167 0.833 28 H 0.093 0.907 29 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.762 -12.341 0.837 12.674 hybrid contribution -0.025 1.514 -0.666 1.654 sum 2.737 -10.827 0.172 11.169 Atomic orbital electron populations 1.69964 1.07242 1.27591 1.50815 1.25766 0.95688 1.02543 0.94402 0.85598 0.78337 0.78761 0.78897 1.21138 1.19534 1.19588 1.21403 0.93260 0.91291 1.51232 0.92219 1.19207 0.94156 0.93318 0.93537 0.98453 1.22025 0.95228 0.90242 0.97730 1.57163 1.15937 1.02978 1.51228 1.18932 0.94807 0.90419 0.99518 1.17958 0.81768 0.93907 1.02719 1.91411 1.39569 1.97392 1.84311 1.21280 0.96747 0.96280 1.01840 1.21262 0.93740 0.99047 0.98180 1.21392 1.00912 0.90910 1.00042 1.20294 0.95062 0.97333 0.98651 1.20596 0.97712 0.90853 1.01196 0.92772 0.93994 0.89686 0.82417 0.82187 0.81158 0.83331 0.90687 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.80 11.37 21.45 0.24 -51.55 15 2 C 0.02 0.82 5.29 84.66 0.45 1.27 15 3 Si 0.96 42.56 29.54 68.60 2.03 44.58 15 4 H -0.29 -12.56 7.11 99.48 0.71 -11.85 15 5 H -0.27 -11.67 7.11 99.48 0.71 -10.96 15 6 H -0.27 -11.67 7.11 99.48 0.71 -10.97 15 7 C -0.53 -28.58 8.54 25.60 0.22 -28.36 15 8 H 0.06 3.09 7.75 -2.91 -0.02 3.07 15 9 C 0.02 0.88 2.30 -11.40 -0.03 0.85 15 10 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 15 11 C 0.08 3.72 5.77 86.52 0.50 4.22 15 12 N -0.65 -28.38 6.24 -338.80 -2.11 -30.49 15 13 C 0.06 2.47 6.13 38.29 0.23 2.71 15 14 C 0.06 1.99 7.29 22.58 0.16 2.16 15 15 F -0.15 -5.37 16.96 44.97 0.76 -4.61 15 16 C -0.14 -3.68 10.01 22.23 0.22 -3.46 15 17 C -0.10 -2.34 10.05 22.24 0.22 -2.11 15 18 C -0.11 -3.13 9.63 22.33 0.21 -2.92 15 19 C -0.11 -4.04 5.74 -19.71 -0.11 -4.15 15 20 C -0.07 -2.71 5.10 29.91 0.15 -2.56 15 21 H 0.26 14.23 8.31 -92.71 -0.77 13.46 15 22 H 0.04 2.08 8.11 -2.39 -0.02 2.06 15 23 H 0.08 4.64 6.02 -2.39 -0.01 4.63 15 24 H 0.35 15.23 8.84 -89.69 -0.79 14.44 15 25 H 0.16 3.08 8.06 -2.91 -0.02 3.05 15 26 H 0.17 2.34 8.06 -2.91 -0.02 2.31 15 27 H 0.15 3.26 8.06 -2.91 -0.02 3.23 15 28 H 0.07 2.84 8.14 -2.38 -0.02 2.82 15 29 H 0.07 2.79 8.08 -2.39 -0.02 2.77 15 Total: -1.00 -60.06 248.84 3.53 -56.52 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.37 Total: 17.90 kcal Atomic # 6 Polarization: -34.60 SS G_CDS: 2.24 Total: -32.36 kcal Atomic # 7 Polarization: -80.18 SS G_CDS: -1.87 Total: -82.05 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 0.76 Total: -4.61 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Total: -60.06 3.53 -56.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084768402.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.439 kcal (2) G-P(sol) polarization free energy of solvation -60.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds