Wall clock time and date at job start Mon Mar 30 2020 03:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99484 * 2 1 4 4 H 1.48506 * 109.46844 * 264.87001 * 3 2 1 5 5 H 1.48496 * 109.47485 * 24.87196 * 3 2 1 6 6 H 1.48501 * 109.46912 * 144.87750 * 3 2 1 7 7 C 1.37873 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00419 * 4.79669 * 7 2 1 9 9 C 1.50694 * 119.99879 * 184.79574 * 7 2 1 10 10 H 1.09004 * 109.47415 * 334.91114 * 9 7 2 11 11 N 1.46898 * 109.47304 * 94.91503 * 9 7 2 12 12 C 1.50698 * 109.47320 * 214.91549 * 9 7 2 13 13 C 1.38355 * 120.34581 * 280.00111 * 12 9 7 14 14 N 1.31926 * 121.08247 * 180.02562 * 13 12 9 15 15 C 1.31695 * 121.87798 * 359.97438 * 14 13 12 16 16 C 1.39525 * 120.56805 * 0.02562 * 15 14 13 17 17 C 1.47842 * 120.56107 * 179.97438 * 16 15 14 18 18 N 1.34777 * 119.99667 * 359.97438 * 17 16 15 19 19 O 1.21553 * 119.99928 * 180.02562 * 17 16 15 20 20 C 1.38359 * 120.35448 * 99.72434 * 12 9 7 21 21 H 0.96995 * 120.00329 * 0.02562 * 1 2 3 22 22 H 1.00904 * 111.00050 * 293.84869 * 11 9 7 23 23 H 1.00898 * 111.00603 * 57.80168 * 11 9 7 24 24 H 1.07999 * 119.46328 * 359.97250 * 13 12 9 25 25 H 1.08002 * 119.71920 * 180.02562 * 15 14 13 26 26 H 0.96989 * 120.00451 * 0.02562 * 18 17 16 27 27 H 0.97006 * 119.99259 * 180.02562 * 18 17 16 28 28 H 1.08000 * 120.85024 * 359.97438 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6049 1.9839 -1.3945 5 1 1.3965 2.6816 0.5888 6 1 3.4883 1.4740 0.8055 7 6 2.0046 -1.1940 0.0005 8 1 1.4675 -2.1277 -0.0773 9 6 3.5076 -1.1962 0.1096 10 1 3.9001 -0.2488 -0.2598 11 7 3.8963 -1.3725 1.5153 12 6 4.0693 -2.3273 -0.7125 13 6 4.0690 -3.6190 -0.2168 14 7 4.5575 -4.6200 -0.9239 15 6 5.0644 -4.4402 -2.1260 16 6 5.1018 -3.1678 -2.6972 17 6 5.6714 -2.9660 -4.0465 18 7 6.1607 -4.0160 -4.7353 19 8 5.6992 -1.8529 -4.5342 20 6 4.5855 -2.0861 -1.9733 21 1 -0.4850 0.8400 -0.0004 22 1 3.6180 -0.5769 2.0699 23 1 3.5141 -2.2271 1.8917 24 1 3.6631 -3.8110 0.7654 25 1 5.4546 -5.2848 -2.6744 26 1 6.1389 -4.9041 -4.3460 27 1 6.5348 -3.8835 -5.6204 28 1 4.5938 -1.0884 -2.3868 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104499444.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:42 Heat of formation + Delta-G solvation = -37.545590 kcal Electronic energy + Delta-G solvation = -14453.006413 eV Core-core repulsion = 11888.203200 eV Total energy + Delta-G solvation = -2564.803214 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.59417 -39.92167 -36.98735 -34.90463 -34.13984 -33.24377 -31.40100 -28.33444 -25.86936 -24.83194 -23.08670 -21.17203 -19.34556 -19.01072 -18.20512 -17.67413 -16.86236 -16.61643 -16.15378 -15.96218 -15.32693 -14.81055 -14.68114 -14.43923 -14.07875 -13.63973 -13.36581 -13.06550 -12.72266 -12.03631 -11.86767 -11.41876 -10.95348 -10.84135 -10.69503 -10.41745 -10.01418 -9.32575 -8.41224 -6.49628 -0.33801 0.30436 1.30660 1.34355 1.42224 1.81363 2.24374 2.44191 2.86352 2.99959 3.39476 3.74317 3.82519 3.93922 4.05418 4.28457 4.46126 4.60395 4.86059 4.99216 5.31712 5.47731 5.61028 5.84504 6.07290 6.35704 6.43665 6.57142 6.81066 6.89410 7.19738 7.24650 8.74427 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.031549 B = 0.008816 C = 0.007699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.307152 B = 3175.142018 C = 3636.127194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.237 1.237 7 C -0.546 4.546 8 H 0.036 0.964 9 C 0.218 3.782 10 H 0.048 0.952 11 N -0.839 5.839 12 C -0.099 4.099 13 C 0.126 3.874 14 N -0.494 5.494 15 C 0.124 3.876 16 C -0.199 4.199 17 C 0.573 3.427 18 N -0.820 5.820 19 O -0.587 6.587 20 C -0.041 4.041 21 H 0.269 0.731 22 H 0.336 0.664 23 H 0.336 0.664 24 H 0.163 0.837 25 H 0.203 0.797 26 H 0.419 0.581 27 H 0.417 0.583 28 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.348 -8.588 -4.714 15.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.174 4.174 3 Si 0.758 3.242 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.161 1.161 7 C -0.585 4.585 8 H 0.055 0.945 9 C 0.108 3.892 10 H 0.066 0.934 11 N -0.367 5.367 12 C -0.102 4.102 13 C -0.029 4.029 14 N -0.202 5.202 15 C -0.035 4.035 16 C -0.204 4.204 17 C 0.358 3.642 18 N -0.385 5.385 19 O -0.468 6.468 20 C -0.068 4.068 21 H 0.078 0.922 22 H 0.147 0.853 23 H 0.148 0.852 24 H 0.180 0.820 25 H 0.220 0.780 26 H 0.252 0.748 27 H 0.250 0.750 28 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 12.886 -8.609 -4.777 16.217 hybrid contribution -1.325 1.590 -0.397 2.107 sum 11.561 -7.019 -5.175 14.482 Atomic orbital electron populations 1.70032 1.08206 1.28445 1.50671 1.25877 0.95394 1.02766 0.93333 0.85926 0.79795 0.79016 0.79490 1.19961 1.20936 1.16054 1.21748 0.91504 0.93478 1.51788 0.94531 1.18180 0.91210 0.92346 0.87508 0.93370 1.59525 1.66026 1.07907 1.03278 1.21020 0.96320 0.97629 0.95245 1.22786 0.93173 0.87486 0.99488 1.67730 1.10546 1.34342 1.07580 1.23443 0.93725 0.95150 0.91198 1.20916 1.06668 0.96137 0.96666 1.18060 0.76818 0.84615 0.84703 1.43421 1.63078 1.10332 1.21686 1.90801 1.58849 1.26127 1.71022 1.21591 0.92527 0.99670 0.93004 0.92171 0.85261 0.85160 0.81987 0.78036 0.74828 0.75025 0.85680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.04 13.96 21.45 0.30 -55.74 15 2 C 0.03 1.48 5.47 84.65 0.46 1.94 15 3 Si 0.93 42.31 26.99 68.60 1.85 44.16 15 4 H -0.27 -12.49 7.11 99.48 0.71 -11.79 15 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 15 6 H -0.24 -9.79 6.82 99.48 0.68 -9.12 15 7 C -0.55 -29.20 9.11 25.60 0.23 -28.97 15 8 H 0.04 2.19 8.06 -2.91 -0.02 2.17 15 9 C 0.22 9.69 2.64 43.42 0.11 9.81 15 10 H 0.05 2.20 5.19 -2.38 -0.01 2.19 15 11 N -0.84 -32.33 9.02 -174.96 -1.58 -33.91 15 12 C -0.10 -4.02 4.95 -19.81 -0.10 -4.12 15 13 C 0.13 4.55 10.46 84.71 0.89 5.44 15 14 N -0.49 -15.62 10.35 -194.75 -2.01 -17.63 15 15 C 0.12 3.21 10.71 85.02 0.91 4.12 15 16 C -0.20 -6.17 5.89 -19.99 -0.12 -6.29 15 17 C 0.57 16.26 8.05 86.79 0.70 16.96 15 18 N -0.82 -12.67 8.83 -175.61 -1.55 -14.22 15 19 O -0.59 -22.19 17.26 -3.88 -0.07 -22.26 15 20 C -0.04 -1.59 9.36 22.73 0.21 -1.37 15 21 H 0.27 15.15 8.31 -92.71 -0.77 14.38 15 22 H 0.34 12.74 9.07 -89.69 -0.81 11.93 15 23 H 0.34 12.05 7.43 -89.70 -0.67 11.38 15 24 H 0.16 5.48 6.71 -2.91 -0.02 5.46 15 25 H 0.20 2.85 6.42 -2.91 -0.02 2.83 15 26 H 0.42 3.42 6.90 -92.72 -0.64 2.78 15 27 H 0.42 4.98 8.93 -92.70 -0.83 4.16 15 28 H 0.13 5.13 7.74 -2.91 -0.02 5.11 15 Total: -1.00 -71.09 248.83 -1.48 -72.56 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: -1.72 Total: 29.52 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: 3.30 Total: -2.48 kcal Atomic # 7 Polarization: -116.66 SS G_CDS: -4.84 Total: -121.50 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.07 Total: -22.26 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 1.85 Total: 44.16 kcal Total: -71.09 -1.48 -72.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104499444.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.019 kcal (2) G-P(sol) polarization free energy of solvation -71.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds