Wall clock time and date at job start Mon Mar 30 2020 03:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47093 * 269.99513 * 3 2 1 5 5 H 1.48495 * 109.46891 * 29.99921 * 3 2 1 6 6 H 1.48504 * 109.47189 * 149.99610 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 11 11 N 1.46896 * 109.46997 * 300.00267 * 9 7 2 12 12 C 1.50701 * 109.47064 * 180.02562 * 9 7 2 13 13 C 1.38353 * 120.34452 * 79.72829 * 12 9 7 14 14 N 1.31930 * 121.07480 * 179.70010 * 13 12 9 15 15 C 1.31693 * 121.87977 * 0.58863 * 14 13 12 16 16 C 1.39519 * 120.56711 * 359.70042 * 15 14 13 17 17 C 1.47842 * 120.56102 * 179.97438 * 16 15 14 18 18 N 1.34778 * 119.99703 * 0.02562 * 17 16 15 19 19 O 1.21546 * 120.00231 * 180.02562 * 17 16 15 20 20 C 1.38349 * 120.34912 * 259.99940 * 12 9 7 21 21 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 22 22 H 1.00907 * 110.99811 * 176.04301 * 11 9 7 23 23 H 1.00900 * 111.00550 * 300.00040 * 11 9 7 24 24 H 1.08003 * 119.46238 * 359.97049 * 13 12 9 25 25 H 1.08001 * 119.71708 * 179.68608 * 15 14 13 26 26 H 0.97007 * 120.00368 * 359.97438 * 18 17 16 27 27 H 0.96998 * 120.00043 * 180.02562 * 18 17 16 28 28 H 1.08004 * 120.86111 * 0.02684 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8745 -0.6801 0.8912 11 7 4.0016 -0.5018 -1.1982 12 6 4.0138 -2.6149 0.0010 13 6 4.0465 -3.3446 -1.1740 14 7 4.4889 -4.5874 -1.1917 15 6 4.9066 -5.1926 -0.0992 16 6 4.9000 -4.5274 1.1271 17 6 5.3684 -5.2071 2.3536 18 7 5.8071 -6.4801 2.2928 19 8 5.3579 -4.6181 3.4167 20 6 4.4418 -3.2051 1.1768 21 1 -0.4850 0.8401 -0.0004 22 1 5.0082 -0.4317 -1.1893 23 1 3.6784 -0.9594 -2.0374 24 1 3.7084 -2.8879 -2.0925 25 1 5.2569 -6.2128 -0.1530 26 1 5.8152 -6.9504 1.4444 27 1 6.1141 -6.9262 3.0975 28 1 4.4227 -2.6603 2.1091 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104499450.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:46 Heat of formation + Delta-G solvation = -5.271114 kcal Electronic energy + Delta-G solvation = -14432.579960 eV Core-core repulsion = 11869.176272 eV Total energy + Delta-G solvation = -2563.403687 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.39674 -38.74563 -35.41407 -33.83317 -32.17370 -31.86548 -29.96779 -26.55531 -24.57036 -23.30801 -21.68233 -19.86765 -17.93189 -17.27201 -16.81800 -16.48751 -15.50673 -14.84815 -14.74850 -14.54794 -14.03722 -13.57809 -13.30644 -12.78542 -12.55819 -11.96475 -11.87613 -10.83156 -10.71800 -10.33790 -10.00084 -9.82955 -9.55798 -9.36530 -9.18200 -8.62786 -8.52839 -7.83873 -6.09507 -4.22305 0.87039 1.57570 2.96071 3.41613 3.53240 3.56678 3.69109 4.11554 4.45826 4.57635 4.88456 5.02035 5.13794 5.28753 5.37776 5.68958 5.75971 5.92931 6.26234 6.44846 6.65276 6.87109 6.88623 7.20608 7.44561 7.97795 8.08976 8.17458 8.19121 8.53399 8.87945 9.51809 10.99466 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.039462 B = 0.007766 C = 0.007268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.365850 B = 3604.800964 C = 3851.582457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.085 3.915 3 Si 0.938 3.062 4 H -0.279 1.279 5 H -0.317 1.317 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.072 0.928 9 C 0.220 3.780 10 H 0.057 0.943 11 N -0.839 5.839 12 C -0.121 4.121 13 C 0.122 3.878 14 N -0.489 5.489 15 C 0.108 3.892 16 C -0.198 4.198 17 C 0.572 3.428 18 N -0.853 5.853 19 O -0.538 6.538 20 C -0.017 4.017 21 H 0.266 0.734 22 H 0.313 0.687 23 H 0.335 0.665 24 H 0.158 0.842 25 H 0.149 0.851 26 H 0.400 0.600 27 H 0.403 0.597 28 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.796 -10.091 -0.362 15.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.120 4.120 3 Si 0.770 3.230 4 H -0.205 1.205 5 H -0.247 1.247 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.090 0.910 9 C 0.110 3.890 10 H 0.074 0.926 11 N -0.369 5.369 12 C -0.125 4.125 13 C -0.034 4.034 14 N -0.196 5.196 15 C -0.051 4.051 16 C -0.203 4.203 17 C 0.358 3.642 18 N -0.418 5.418 19 O -0.415 6.415 20 C -0.043 4.043 21 H 0.075 0.925 22 H 0.125 0.875 23 H 0.150 0.850 24 H 0.175 0.825 25 H 0.166 0.834 26 H 0.230 0.770 27 H 0.234 0.766 28 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 11.144 -9.270 -0.316 14.499 hybrid contribution 0.849 -0.200 0.457 0.985 sum 11.993 -9.469 0.141 15.281 Atomic orbital electron populations 1.69947 1.06838 1.27612 1.48647 1.25014 0.94623 1.00155 0.92245 0.85841 0.78411 0.80626 0.78134 1.20483 1.24700 1.19899 1.20682 0.86790 0.94755 1.53957 0.91035 1.18729 0.96699 0.82656 0.90922 0.92566 1.59355 1.13211 1.58347 1.05970 1.22313 0.95329 1.01839 0.92995 1.22791 0.92996 0.89123 0.98538 1.67629 1.10872 1.10883 1.30256 1.22682 0.96026 0.98977 0.87431 1.20828 1.07917 0.97045 0.94550 1.18175 0.76232 0.81479 0.88355 1.43728 1.68927 1.14664 1.14435 1.90816 1.54680 1.65424 1.30616 1.21687 0.90888 0.92467 0.99291 0.92488 0.87521 0.85017 0.82467 0.83355 0.77048 0.76576 0.83789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.92 13.96 55.43 0.77 -26.15 15 2 C 0.08 2.39 5.47 -17.82 -0.10 2.29 15 3 Si 0.94 23.17 26.03 -169.99 -4.42 18.74 15 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 15 5 H -0.32 -8.00 7.11 56.52 0.40 -7.60 15 6 H -0.27 -6.54 6.54 56.52 0.37 -6.17 15 7 C -0.52 -14.07 9.29 -34.44 -0.32 -14.39 15 8 H 0.07 2.12 7.98 -52.49 -0.42 1.71 15 9 C 0.22 4.79 2.36 -70.02 -0.16 4.63 15 10 H 0.06 1.28 7.09 -51.93 -0.37 0.91 15 11 N -0.84 -16.28 6.60 -6.65 -0.04 -16.32 15 12 C -0.12 -2.30 4.89 -104.54 -0.51 -2.81 15 13 C 0.12 2.13 10.45 -17.47 -0.18 1.94 15 14 N -0.49 -7.94 10.35 -12.91 -0.13 -8.08 15 15 C 0.11 1.51 10.71 -17.13 -0.18 1.32 15 16 C -0.20 -3.08 5.89 -104.82 -0.62 -3.70 15 17 C 0.57 8.31 8.05 -12.33 -0.10 8.21 15 18 N -0.85 -7.74 8.83 30.53 0.27 -7.47 15 19 O -0.54 -9.95 17.26 5.33 0.09 -9.86 15 20 C -0.02 -0.30 9.36 -38.87 -0.36 -0.66 15 21 H 0.27 7.54 8.31 -40.82 -0.34 7.20 15 22 H 0.31 5.17 9.06 -39.29 -0.36 4.81 15 23 H 0.34 6.08 7.36 -39.29 -0.29 5.80 15 24 H 0.16 2.58 6.67 -52.48 -0.35 2.23 15 25 H 0.15 1.40 6.42 -52.49 -0.34 1.06 15 26 H 0.40 2.46 6.90 -40.82 -0.28 2.17 15 27 H 0.40 2.96 8.93 -40.82 -0.36 2.60 15 28 H 0.14 2.68 7.74 -52.48 -0.41 2.28 15 LS Contribution 246.70 15.07 3.72 3.72 Total: -1.00 -33.41 246.70 -4.63 -38.03 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -2.34 Total: 10.56 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -2.54 Total: -3.17 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: 0.87 Total: -58.02 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -4.42 Total: 18.74 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -33.41 -4.63 -38.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104499450.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.762 kcal (2) G-P(sol) polarization free energy of solvation -33.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds