Wall clock time and date at job start Mon Mar 30 2020 03:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47093 * 269.99513 * 3 2 1 5 5 H 1.48495 * 109.46891 * 29.99921 * 3 2 1 6 6 H 1.48504 * 109.47189 * 149.99610 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 11 11 N 1.46896 * 109.46997 * 300.00267 * 9 7 2 12 12 C 1.50701 * 109.47064 * 180.02562 * 9 7 2 13 13 C 1.38353 * 120.34452 * 79.72829 * 12 9 7 14 14 N 1.31930 * 121.07480 * 179.70010 * 13 12 9 15 15 C 1.31693 * 121.87977 * 0.58863 * 14 13 12 16 16 C 1.39519 * 120.56711 * 359.70042 * 15 14 13 17 17 C 1.47842 * 120.56102 * 179.97438 * 16 15 14 18 18 N 1.34778 * 119.99703 * 0.02562 * 17 16 15 19 19 O 1.21546 * 120.00231 * 180.02562 * 17 16 15 20 20 C 1.38349 * 120.34912 * 259.99940 * 12 9 7 21 21 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 22 22 H 1.00907 * 110.99811 * 176.04301 * 11 9 7 23 23 H 1.00900 * 111.00550 * 300.00040 * 11 9 7 24 24 H 1.08003 * 119.46238 * 359.97049 * 13 12 9 25 25 H 1.08001 * 119.71708 * 179.68608 * 15 14 13 26 26 H 0.97007 * 120.00368 * 359.97438 * 18 17 16 27 27 H 0.96998 * 120.00043 * 180.02562 * 18 17 16 28 28 H 1.08004 * 120.86111 * 0.02684 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8745 -0.6801 0.8912 11 7 4.0016 -0.5018 -1.1982 12 6 4.0138 -2.6149 0.0010 13 6 4.0465 -3.3446 -1.1740 14 7 4.4889 -4.5874 -1.1917 15 6 4.9066 -5.1926 -0.0992 16 6 4.9000 -4.5274 1.1271 17 6 5.3684 -5.2071 2.3536 18 7 5.8071 -6.4801 2.2928 19 8 5.3579 -4.6181 3.4167 20 6 4.4418 -3.2051 1.1768 21 1 -0.4850 0.8401 -0.0004 22 1 5.0082 -0.4317 -1.1893 23 1 3.6784 -0.9594 -2.0374 24 1 3.7084 -2.8879 -2.0925 25 1 5.2569 -6.2128 -0.1530 26 1 5.8152 -6.9504 1.4444 27 1 6.1141 -6.9262 3.0975 28 1 4.4227 -2.6603 2.1091 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104499450.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:46 Heat of formation + Delta-G solvation = -34.723538 kcal Electronic energy + Delta-G solvation = -14433.857112 eV Core-core repulsion = 11869.176272 eV Total energy + Delta-G solvation = -2564.680840 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.66899 -39.97819 -37.04654 -34.91904 -34.10871 -33.29115 -31.34150 -28.44741 -25.93055 -24.76335 -23.14647 -21.22405 -19.08864 -19.04328 -18.19832 -17.72579 -16.96764 -16.42777 -16.09480 -15.99275 -15.69475 -14.95487 -14.62426 -14.43226 -14.11465 -13.75631 -13.38568 -12.72081 -12.57856 -11.93505 -11.57144 -11.52306 -10.88476 -10.78352 -10.70359 -10.51812 -9.98556 -9.41768 -8.26789 -6.41732 -0.40843 0.22509 1.53231 1.58876 1.72272 1.76773 2.41296 2.51590 2.81847 3.08220 3.32615 3.73543 3.79566 3.95702 4.02840 4.17801 4.28405 4.58787 4.91239 4.94900 5.28538 5.49833 5.55332 5.82241 6.08594 6.32898 6.39745 6.72347 6.81054 6.94221 7.21991 7.35667 8.86132 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.039462 B = 0.007766 C = 0.007268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.365850 B = 3604.800964 C = 3851.582457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.030 3.970 3 Si 1.001 2.999 4 H -0.271 1.271 5 H -0.326 1.326 6 H -0.261 1.261 7 C -0.519 4.519 8 H 0.030 0.970 9 C 0.230 3.770 10 H 0.046 0.954 11 N -0.841 5.841 12 C -0.142 4.142 13 C 0.122 3.878 14 N -0.494 5.494 15 C 0.127 3.873 16 C -0.199 4.199 17 C 0.572 3.428 18 N -0.821 5.821 19 O -0.586 6.586 20 C -0.032 4.032 21 H 0.266 0.734 22 H 0.336 0.664 23 H 0.344 0.656 24 H 0.164 0.836 25 H 0.203 0.797 26 H 0.419 0.581 27 H 0.417 0.583 28 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.102 -11.628 -1.061 18.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.169 4.169 3 Si 0.830 3.170 4 H -0.197 1.197 5 H -0.257 1.257 6 H -0.185 1.185 7 C -0.557 4.557 8 H 0.048 0.952 9 C 0.119 3.881 10 H 0.064 0.936 11 N -0.372 5.372 12 C -0.146 4.146 13 C -0.034 4.034 14 N -0.201 5.201 15 C -0.032 4.032 16 C -0.204 4.204 17 C 0.357 3.643 18 N -0.386 5.386 19 O -0.466 6.466 20 C -0.059 4.059 21 H 0.075 0.925 22 H 0.149 0.851 23 H 0.159 0.841 24 H 0.181 0.819 25 H 0.219 0.781 26 H 0.251 0.749 27 H 0.250 0.750 28 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 13.497 -10.874 -1.048 17.364 hybrid contribution 0.181 0.064 0.678 0.705 sum 13.678 -10.809 -0.370 17.437 Atomic orbital electron populations 1.70077 1.08601 1.28347 1.51386 1.25844 0.95158 1.03629 0.92307 0.84841 0.77381 0.76402 0.78360 1.19687 1.25657 1.18520 1.20907 0.89699 0.92791 1.52296 0.95209 1.18305 0.93437 0.84921 0.91426 0.93620 1.59015 1.14959 1.57951 1.05319 1.21968 0.97703 1.00807 0.94169 1.22863 0.92739 0.89685 0.98120 1.67746 1.11195 1.10117 1.31086 1.23475 0.93311 1.00558 0.85829 1.20978 1.07370 0.96102 0.95969 1.18062 0.76317 0.82759 0.87134 1.43441 1.66395 1.12605 1.16132 1.90807 1.56977 1.66908 1.31951 1.21693 0.91751 0.94020 0.98461 0.92537 0.85052 0.84074 0.81853 0.78078 0.74856 0.75008 0.85286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.77 13.96 21.45 0.30 -58.47 15 2 C 0.03 1.74 5.47 84.65 0.46 2.20 15 3 Si 1.00 48.12 26.03 68.60 1.79 49.90 15 4 H -0.27 -12.63 7.11 99.48 0.71 -11.92 15 5 H -0.33 -16.04 7.11 99.48 0.71 -15.33 15 6 H -0.26 -11.84 6.54 99.48 0.65 -11.19 15 7 C -0.52 -28.60 9.29 25.60 0.24 -28.36 15 8 H 0.03 1.85 7.98 -2.91 -0.02 1.82 15 9 C 0.23 10.02 2.36 43.43 0.10 10.12 15 10 H 0.05 2.09 7.09 -2.39 -0.02 2.07 15 11 N -0.84 -31.39 6.60 -174.95 -1.15 -32.55 15 12 C -0.14 -5.38 4.89 -19.81 -0.10 -5.48 15 13 C 0.12 4.09 10.45 84.71 0.89 4.98 15 14 N -0.49 -14.64 10.35 -194.75 -2.01 -16.65 15 15 C 0.13 3.07 10.71 85.02 0.91 3.98 15 16 C -0.20 -5.78 5.89 -19.99 -0.12 -5.90 15 17 C 0.57 15.34 8.05 86.79 0.70 16.04 15 18 N -0.82 -11.68 8.83 -175.61 -1.55 -13.23 15 19 O -0.59 -21.25 17.26 -3.86 -0.07 -21.31 15 20 C -0.03 -1.17 9.36 22.73 0.21 -0.95 15 21 H 0.27 15.60 8.31 -92.71 -0.77 14.83 15 22 H 0.34 10.34 9.06 -89.69 -0.81 9.52 15 23 H 0.34 12.00 7.36 -89.69 -0.66 11.34 15 24 H 0.16 5.16 6.67 -2.91 -0.02 5.14 15 25 H 0.20 2.56 6.42 -2.91 -0.02 2.54 15 26 H 0.42 2.93 6.90 -92.70 -0.64 2.29 15 27 H 0.42 4.56 8.93 -92.71 -0.83 3.73 15 28 H 0.13 4.98 7.74 -2.91 -0.02 4.96 15 Total: -1.00 -74.73 246.70 -1.15 -75.88 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: -1.75 Total: 19.81 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 3.30 Total: -3.37 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -4.42 Total: -120.90 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.07 Total: -21.31 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 1.79 Total: 49.90 kcal Total: -74.73 -1.15 -75.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104499450.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.153 kcal (2) G-P(sol) polarization free energy of solvation -74.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds