Wall clock time and date at job start Mon Mar 30 2020 02:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99849 * 2 1 4 4 H 1.48501 * 109.46966 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47346 * 300.00348 * 3 2 1 6 6 H 1.48505 * 109.46752 * 60.00284 * 3 2 1 7 7 C 1.37871 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99977 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00367 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47525 * 180.02562 * 9 7 2 11 11 C 1.47914 * 111.00245 * 170.19790 * 10 9 7 12 12 C 1.54594 * 102.62689 * 94.46252 * 11 10 9 13 13 C 1.51581 * 102.92265 * 25.31513 * 12 11 10 14 14 C 1.37944 * 131.51412 * 163.30035 * 13 12 11 15 15 C 1.38480 * 120.05986 * 181.06816 * 14 13 12 16 16 F 1.35097 * 120.08442 * 180.22010 * 15 14 13 17 17 C 1.38479 * 119.83161 * 0.24510 * 15 14 13 18 18 C 1.37924 * 120.23692 * 359.84593 * 17 15 14 19 19 C 1.38928 * 107.97039 * 344.49178 * 13 12 11 20 20 H 0.97000 * 120.00485 * 0.02562 * 1 2 3 21 21 H 1.09006 * 109.46928 * 60.00413 * 9 7 2 22 22 H 1.08998 * 109.47056 * 300.00148 * 9 7 2 23 23 H 1.08996 * 110.77740 * 212.74669 * 11 10 9 24 24 H 1.09000 * 110.77502 * 336.17543 * 11 10 9 25 25 H 1.08999 * 110.72914 * 143.87352 * 12 11 10 26 26 H 1.09001 * 110.73499 * 267.00404 * 12 11 10 27 27 H 1.08002 * 119.97368 * 1.35259 * 14 13 12 28 28 H 1.08002 * 119.88287 * 179.87036 * 17 15 14 29 29 H 1.08006 * 119.88459 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5159 -4.9029 0.2346 12 6 1.2664 -5.4197 -1.2009 13 6 2.3592 -4.7389 -2.0010 14 6 2.8715 -4.9994 -3.2550 15 6 3.9041 -4.2251 -3.7570 16 9 4.4032 -4.4769 -4.9868 17 6 4.4239 -3.1923 -2.9949 18 6 3.9149 -2.9307 -1.7400 19 6 2.8745 -3.7049 -1.2295 20 1 -0.4851 0.8400 -0.0004 21 1 0.6241 -2.5567 -0.8904 22 1 0.6248 -2.5571 0.8897 23 1 2.1570 -5.5898 0.7869 24 1 0.5730 -4.7462 0.7585 25 1 1.3708 -6.5038 -1.2442 26 1 0.2822 -5.1137 -1.5556 27 1 2.4640 -5.8050 -3.8477 28 1 5.2306 -2.5892 -3.3848 29 1 4.3244 -2.1235 -1.1507 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108241789.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:28 Heat of formation + Delta-G solvation = -8.621262 kcal Electronic energy + Delta-G solvation = -14672.298469 eV Core-core repulsion = 12088.829547 eV Total energy + Delta-G solvation = -2583.468922 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.47186 -40.10520 -35.98271 -33.12322 -31.56216 -28.98723 -28.44804 -26.43660 -22.90303 -22.65659 -20.94581 -20.27167 -16.77852 -16.63996 -16.11709 -15.50135 -15.25036 -14.78948 -14.31918 -13.83144 -13.41833 -12.85188 -12.55127 -12.45646 -12.25116 -11.85925 -11.65753 -11.26669 -11.10664 -10.76747 -10.63596 -10.47225 -9.92190 -9.32383 -8.70380 -8.51579 -8.35435 -7.11709 -6.11801 -4.13772 1.63490 1.71849 3.26850 3.34457 3.38136 4.01375 4.30340 4.44787 4.69339 5.01593 5.19438 5.25013 5.38577 5.46120 5.64502 5.69564 5.96906 6.08755 6.20537 6.24695 6.41927 6.54420 6.71150 6.85768 7.08818 7.12132 7.31214 7.66075 7.93832 8.07326 8.32220 8.91741 9.50624 10.99164 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.027411 B = 0.009825 C = 0.007842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.260944 B = 2849.330535 C = 3569.853480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.058 3.942 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.513 4.513 8 H 0.067 0.933 9 C 0.196 3.804 10 N -0.496 5.496 11 C 0.047 3.953 12 C -0.105 4.105 13 C -0.132 4.132 14 C -0.126 4.126 15 C 0.060 3.940 16 F -0.150 7.150 17 C -0.139 4.139 18 C -0.075 4.075 19 C 0.131 3.869 20 H 0.262 0.738 21 H 0.001 0.999 22 H 0.039 0.961 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.124 0.876 28 H 0.132 0.868 29 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.424 -8.779 -3.664 10.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.551 4.551 8 H 0.085 0.915 9 C 0.074 3.926 10 N -0.213 5.213 11 C -0.081 4.081 12 C -0.143 4.143 13 C -0.135 4.135 14 C -0.146 4.146 15 C 0.040 3.960 16 F -0.129 7.129 17 C -0.158 4.158 18 C -0.095 4.095 19 C 0.033 3.967 20 H 0.072 0.928 21 H 0.019 0.981 22 H 0.057 0.943 23 H 0.096 0.904 24 H 0.100 0.900 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.142 0.858 28 H 0.149 0.851 29 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.589 -8.526 -3.214 10.202 hybrid contribution -0.154 0.803 -0.864 1.190 sum 4.434 -7.723 -4.078 9.795 Atomic orbital electron populations 1.69950 1.06094 1.26911 1.50649 1.24963 0.94873 0.99372 0.95160 0.86438 0.80116 0.83294 0.77618 1.19523 1.20983 1.20908 1.21190 0.93654 0.89675 1.50572 0.91482 1.19930 0.89282 0.86564 0.96856 1.60361 1.28343 1.04819 1.27733 1.23144 0.98819 0.91020 0.95098 1.21660 0.97123 0.99995 0.95541 1.20854 0.98254 1.00366 0.93976 1.20106 0.97476 1.01058 0.95915 1.17340 0.98039 0.99083 0.81551 1.91427 1.86849 1.93991 1.40610 1.20848 1.02034 0.97950 0.94992 1.20515 0.95201 0.99176 0.94620 1.19648 0.93944 0.93676 0.89431 0.92811 0.98137 0.94344 0.90374 0.89953 0.90300 0.90141 0.85804 0.85057 0.84438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.08 13.29 55.43 0.74 -25.35 15 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 3 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 15 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 7 C -0.51 -13.96 8.46 -34.44 -0.29 -14.25 15 8 H 0.07 1.79 5.99 -52.49 -0.31 1.48 15 9 C 0.20 4.95 4.51 -4.98 -0.02 4.93 15 10 N -0.50 -10.63 5.06 -170.35 -0.86 -11.49 15 11 C 0.05 0.79 7.00 -2.43 -0.02 0.78 15 12 C -0.11 -1.64 6.97 -26.61 -0.19 -1.82 15 13 C -0.13 -2.37 6.23 -104.04 -0.65 -3.02 15 14 C -0.13 -2.10 10.01 -39.60 -0.40 -2.50 15 15 C 0.06 1.02 7.31 -39.40 -0.29 0.73 15 16 F -0.15 -2.46 17.27 2.25 0.04 -2.42 15 17 C -0.14 -2.38 10.00 -39.61 -0.40 -2.77 15 18 C -0.08 -1.46 9.21 -39.27 -0.36 -1.82 15 19 C 0.13 2.68 5.30 -83.35 -0.44 2.23 15 20 H 0.26 7.21 8.31 -40.82 -0.34 6.87 15 21 H 0.00 0.02 8.06 -51.93 -0.42 -0.40 15 22 H 0.04 1.02 7.85 -51.93 -0.41 0.61 15 23 H 0.08 1.17 8.14 -51.93 -0.42 0.75 15 24 H 0.08 1.33 7.60 -51.93 -0.39 0.94 15 25 H 0.08 1.00 8.14 -51.93 -0.42 0.57 15 26 H 0.08 1.26 8.14 -51.93 -0.42 0.84 15 27 H 0.12 1.75 8.06 -52.49 -0.42 1.32 15 28 H 0.13 1.90 8.06 -52.49 -0.42 1.48 15 29 H 0.14 2.70 6.61 -52.48 -0.35 2.35 15 LS Contribution 251.89 15.07 3.80 3.80 Total: -1.00 -29.23 251.89 -7.59 -36.81 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: -3.13 Total: -1.55 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -3.15 Total: -16.01 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: -0.12 Total: -36.83 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.04 Total: -2.42 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.23 -7.59 -36.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108241789.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.193 kcal (2) G-P(sol) polarization free energy of solvation -29.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds