Wall clock time and date at job start Mon Mar 30 2020 02:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99849 * 2 1 4 4 H 1.48501 * 109.46966 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47346 * 300.00348 * 3 2 1 6 6 H 1.48505 * 109.46752 * 60.00284 * 3 2 1 7 7 C 1.37871 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99977 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00367 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47525 * 180.02562 * 9 7 2 11 11 C 1.47914 * 111.00245 * 170.19790 * 10 9 7 12 12 C 1.54594 * 102.62689 * 94.46252 * 11 10 9 13 13 C 1.51581 * 102.92265 * 25.31513 * 12 11 10 14 14 C 1.37944 * 131.51412 * 163.30035 * 13 12 11 15 15 C 1.38480 * 120.05986 * 181.06816 * 14 13 12 16 16 F 1.35097 * 120.08442 * 180.22010 * 15 14 13 17 17 C 1.38479 * 119.83161 * 0.24510 * 15 14 13 18 18 C 1.37924 * 120.23692 * 359.84593 * 17 15 14 19 19 C 1.38928 * 107.97039 * 344.49178 * 13 12 11 20 20 H 0.97000 * 120.00485 * 0.02562 * 1 2 3 21 21 H 1.09006 * 109.46928 * 60.00413 * 9 7 2 22 22 H 1.08998 * 109.47056 * 300.00148 * 9 7 2 23 23 H 1.08996 * 110.77740 * 212.74669 * 11 10 9 24 24 H 1.09000 * 110.77502 * 336.17543 * 11 10 9 25 25 H 1.08999 * 110.72914 * 143.87352 * 12 11 10 26 26 H 1.09001 * 110.73499 * 267.00404 * 12 11 10 27 27 H 1.08002 * 119.97368 * 1.35259 * 14 13 12 28 28 H 1.08002 * 119.88287 * 179.87036 * 17 15 14 29 29 H 1.08006 * 119.88459 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5159 -4.9029 0.2346 12 6 1.2664 -5.4197 -1.2009 13 6 2.3592 -4.7389 -2.0010 14 6 2.8715 -4.9994 -3.2550 15 6 3.9041 -4.2251 -3.7570 16 9 4.4032 -4.4769 -4.9868 17 6 4.4239 -3.1923 -2.9949 18 6 3.9149 -2.9307 -1.7400 19 6 2.8745 -3.7049 -1.2295 20 1 -0.4851 0.8400 -0.0004 21 1 0.6241 -2.5567 -0.8904 22 1 0.6248 -2.5571 0.8897 23 1 2.1570 -5.5898 0.7869 24 1 0.5730 -4.7462 0.7585 25 1 1.3708 -6.5038 -1.2442 26 1 0.2822 -5.1137 -1.5556 27 1 2.4640 -5.8050 -3.8477 28 1 5.2306 -2.5892 -3.3848 29 1 4.3244 -2.1235 -1.1507 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108241789.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:28 Heat of formation + Delta-G solvation = -25.799861 kcal Electronic energy + Delta-G solvation = -14673.043389 eV Core-core repulsion = 12088.829547 eV Total energy + Delta-G solvation = -2584.213842 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.80546 -41.55512 -37.45323 -35.07984 -33.14533 -30.58671 -29.82635 -28.25741 -24.68611 -24.14508 -22.32072 -21.80190 -18.66493 -18.04976 -17.58150 -17.15684 -16.63045 -16.44095 -15.87348 -15.30762 -14.94923 -14.36667 -14.25352 -14.01305 -13.82215 -13.34747 -13.13760 -12.89574 -12.79556 -12.55387 -12.20906 -12.09022 -11.60601 -11.27382 -10.68885 -10.06245 -9.87334 -8.67023 -8.23071 -6.32357 0.22016 0.32176 1.39996 1.40901 1.53537 2.38035 2.58348 2.98063 3.10943 3.28974 3.67530 3.88417 4.08714 4.17130 4.31929 4.41897 4.58858 4.75820 4.85420 4.97787 5.00771 5.06581 5.11352 5.23301 5.31965 5.51722 5.68922 5.82727 5.99388 6.34542 6.50586 6.81991 7.36774 8.88246 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.027411 B = 0.009825 C = 0.007842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.260944 B = 2849.330535 C = 3569.853480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.964 3.036 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.524 4.524 8 H 0.068 0.932 9 C 0.213 3.787 10 N -0.510 5.510 11 C 0.042 3.958 12 C -0.097 4.097 13 C -0.133 4.133 14 C -0.123 4.123 15 C 0.062 3.938 16 F -0.143 7.143 17 C -0.137 4.137 18 C -0.092 4.092 19 C 0.093 3.907 20 H 0.265 0.735 21 H -0.030 1.030 22 H 0.017 0.983 23 H 0.102 0.898 24 H 0.082 0.918 25 H 0.118 0.882 26 H 0.077 0.923 27 H 0.155 0.845 28 H 0.156 0.844 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.387 -9.582 -4.573 11.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.193 4.193 3 Si 0.788 3.212 4 H -0.184 1.184 5 H -0.206 1.206 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.086 0.914 9 C 0.090 3.910 10 N -0.227 5.227 11 C -0.085 4.085 12 C -0.135 4.135 13 C -0.136 4.136 14 C -0.142 4.142 15 C 0.042 3.958 16 F -0.122 7.122 17 C -0.156 4.156 18 C -0.112 4.112 19 C -0.005 4.005 20 H 0.073 0.927 21 H -0.012 1.012 22 H 0.035 0.965 23 H 0.120 0.880 24 H 0.101 0.899 25 H 0.136 0.864 26 H 0.095 0.905 27 H 0.172 0.828 28 H 0.174 0.826 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.572 -9.355 -4.130 11.646 hybrid contribution -0.424 0.974 -0.636 1.238 sum 5.148 -8.381 -4.766 10.930 Atomic orbital electron populations 1.70069 1.07651 1.27880 1.51771 1.25840 0.95694 1.03002 0.94770 0.85408 0.79236 0.78826 0.77683 1.18447 1.20630 1.20346 1.21528 0.93875 0.90814 1.49991 0.91431 1.19506 0.89310 0.88000 0.94199 1.60255 1.27914 1.05469 1.29099 1.23316 0.99092 0.89504 0.96579 1.21681 0.96045 1.02056 0.93741 1.21141 0.98483 0.99662 0.94312 1.20410 0.96849 1.01453 0.95490 1.17452 0.97881 0.98815 0.81620 1.91449 1.86740 1.93887 1.40139 1.21049 1.02347 0.98184 0.94034 1.20585 0.95754 0.99283 0.95610 1.19890 0.95090 0.95545 0.89932 0.92655 1.01248 0.96500 0.88026 0.89941 0.86417 0.90473 0.82755 0.82633 0.85607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.40 13.29 21.44 0.28 -55.12 15 2 C 0.01 0.29 5.46 84.65 0.46 0.75 15 3 Si 0.96 43.77 29.54 68.60 2.03 45.79 15 4 H -0.26 -11.28 7.11 99.48 0.71 -10.58 15 5 H -0.28 -12.51 7.11 99.48 0.71 -11.81 15 6 H -0.28 -12.31 7.11 99.48 0.71 -11.60 15 7 C -0.52 -29.14 8.46 25.60 0.22 -28.93 15 8 H 0.07 3.67 5.99 -2.91 -0.02 3.65 15 9 C 0.21 11.15 4.51 85.56 0.39 11.54 15 10 N -0.51 -22.07 5.06 -692.86 -3.50 -25.57 15 11 C 0.04 1.38 7.00 86.65 0.61 1.98 15 12 C -0.10 -2.83 6.97 30.67 0.21 -2.62 15 13 C -0.13 -4.57 6.23 -19.49 -0.12 -4.70 15 14 C -0.12 -3.75 10.01 22.26 0.22 -3.53 15 15 C 0.06 1.96 7.31 22.38 0.16 2.12 15 16 F -0.14 -4.28 17.27 44.97 0.78 -3.51 15 17 C -0.14 -4.48 10.00 22.25 0.22 -4.25 15 18 C -0.09 -3.57 9.21 22.47 0.21 -3.37 15 19 C 0.09 3.76 5.30 38.24 0.20 3.96 15 20 H 0.26 14.77 8.31 -92.71 -0.77 14.00 15 21 H -0.03 -1.73 8.06 -2.38 -0.02 -1.75 15 22 H 0.02 0.94 7.85 -2.39 -0.02 0.92 15 23 H 0.10 2.85 8.14 -2.39 -0.02 2.83 15 24 H 0.08 2.67 7.60 -2.39 -0.02 2.65 15 25 H 0.12 2.51 8.14 -2.39 -0.02 2.49 15 26 H 0.08 2.31 8.14 -2.39 -0.02 2.29 15 27 H 0.15 3.72 8.06 -2.91 -0.02 3.70 15 28 H 0.16 4.18 8.06 -2.91 -0.02 4.16 15 29 H 0.13 5.03 6.61 -2.91 -0.02 5.01 15 Total: -1.00 -62.99 251.89 3.52 -59.47 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: 1.15 Total: 5.96 kcal Atomic # 6 Polarization: -29.81 SS G_CDS: 2.78 Total: -27.02 kcal Atomic # 7 Polarization: -77.48 SS G_CDS: -3.22 Total: -80.69 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.78 Total: -3.51 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -62.99 3.52 -59.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108241789.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.673 kcal (2) G-P(sol) polarization free energy of solvation -62.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds