Wall clock time and date at job start Mon Mar 30 2020 02:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00177 * 2 1 4 4 H 1.48493 * 109.47345 * 269.99851 * 3 2 1 5 5 H 1.48498 * 109.47178 * 30.00229 * 3 2 1 6 6 H 1.48505 * 109.46922 * 149.99836 * 3 2 1 7 7 C 1.37879 * 119.99836 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99874 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99889 * 0.02562 * 7 2 1 10 10 N 1.46910 * 109.46926 * 185.09387 * 9 7 2 11 11 C 1.47900 * 111.00200 * 294.34515 * 10 9 7 12 12 C 1.54594 * 102.62308 * 148.96073 * 11 10 9 13 13 C 1.51578 * 102.84412 * 334.38865 * 12 11 10 14 14 C 1.37991 * 131.53900 * 196.23367 * 13 12 11 15 15 C 1.38271 * 120.12575 * 179.71137 * 14 13 12 16 16 C 1.38326 * 119.89133 * 359.97438 * 15 14 13 17 17 C 1.38065 * 120.24102 * 0.12892 * 16 15 14 18 18 F 1.35095 * 119.92517 * 180.02562 * 17 16 15 19 19 C 1.38859 * 107.96606 * 16.20150 * 13 12 11 20 20 H 0.96997 * 119.99872 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47012 * 65.09847 * 9 7 2 22 22 H 1.09000 * 109.47566 * 305.09657 * 9 7 2 23 23 H 1.08994 * 110.78178 * 30.67352 * 11 10 9 24 24 H 1.09004 * 110.93599 * 267.31663 * 11 10 9 25 25 H 1.09003 * 110.74194 * 92.72917 * 12 11 10 26 26 H 1.09006 * 110.73783 * 216.05354 * 12 11 10 27 27 H 1.08004 * 119.94283 * 359.70843 * 14 13 12 28 28 H 1.07999 * 120.05114 * 179.97438 * 15 14 13 29 29 H 1.08004 * 119.87835 * 180.10635 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2008 -3.6130 0.1241 11 6 3.0727 -3.7008 -1.0673 12 6 4.3876 -4.2659 -0.4828 13 6 4.3304 -3.8226 0.9656 14 6 5.3057 -3.7480 1.9389 15 6 4.9883 -3.2948 3.2061 16 6 3.6904 -2.9153 3.4975 17 6 2.7100 -2.9898 2.5284 18 9 1.4446 -2.6171 2.8198 19 6 3.0230 -3.4498 1.2481 20 1 -0.4850 0.8400 0.0004 21 1 0.6949 -2.5976 -0.9318 22 1 0.5572 -2.5182 0.8411 23 1 3.2350 -2.7143 -1.5013 24 1 2.6538 -4.3829 -1.8071 25 1 4.4054 -5.3535 -0.5532 26 1 5.2517 -3.8313 -0.9856 27 1 6.3190 -4.0441 1.7106 28 1 5.7525 -3.2373 3.9671 29 1 3.4431 -2.5598 4.4869 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108241988.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:07 Heat of formation + Delta-G solvation = -10.619942 kcal Electronic energy + Delta-G solvation = -15170.044283 eV Core-core repulsion = 12586.488692 eV Total energy + Delta-G solvation = -2583.555591 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -47.87875 -39.85115 -36.16564 -33.02780 -31.36731 -29.04389 -28.43928 -26.17854 -22.80736 -22.40640 -21.02240 -20.09547 -16.90483 -16.22848 -15.72317 -15.51422 -14.97397 -14.50885 -14.25569 -13.98606 -13.43559 -12.58162 -12.53295 -12.15894 -11.86016 -11.67353 -11.24741 -11.02489 -10.92947 -10.75806 -10.63840 -10.27180 -10.12230 -9.80647 -8.94461 -8.47352 -8.08658 -6.90820 -6.07960 -4.17014 1.77790 1.90511 3.25522 3.32544 3.36870 4.10063 4.37886 4.66943 5.05939 5.07554 5.23941 5.28410 5.45651 5.61897 5.81509 5.81931 5.88910 6.25820 6.32071 6.49409 6.58229 6.61473 6.85624 6.96365 6.98974 7.38595 7.47351 7.79730 7.82899 8.02380 8.18376 8.89279 9.49296 10.98119 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.026584 B = 0.012069 C = 0.011049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.025630 B = 2319.409294 C = 2533.548482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.070 3.930 3 Si 0.890 3.110 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.173 3.827 10 N -0.482 5.482 11 C 0.048 3.952 12 C -0.080 4.080 13 C -0.137 4.137 14 C -0.098 4.098 15 C -0.140 4.140 16 C -0.139 4.139 17 C 0.094 3.906 18 F -0.131 7.131 19 C 0.119 3.881 20 H 0.264 0.736 21 H 0.035 0.965 22 H 0.053 0.947 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.117 0.883 28 H 0.123 0.877 29 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.887 -6.537 2.420 11.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.134 4.134 3 Si 0.717 3.283 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.587 4.587 8 H 0.076 0.924 9 C 0.049 3.951 10 N -0.195 5.195 11 C -0.079 4.079 12 C -0.117 4.117 13 C -0.141 4.141 14 C -0.117 4.117 15 C -0.159 4.159 16 C -0.158 4.158 17 C 0.072 3.928 18 F -0.110 7.110 19 C 0.017 3.983 20 H 0.073 0.927 21 H 0.053 0.947 22 H 0.071 0.929 23 H 0.094 0.906 24 H 0.099 0.901 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.135 0.865 28 H 0.141 0.859 29 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.263 -6.858 2.372 10.997 hybrid contribution 0.490 1.774 0.011 1.841 sum 8.753 -5.083 2.383 10.399 Atomic orbital electron populations 1.69936 1.06018 1.27015 1.49404 1.24908 0.94768 0.99156 0.94543 0.86612 0.80061 0.83405 0.78181 1.20521 1.20961 1.19768 1.21599 0.93050 0.91426 1.52637 0.92415 1.20142 0.91076 0.84634 0.99204 1.60913 1.15448 1.42957 1.00187 1.23160 0.90263 1.01581 0.92852 1.21272 0.98581 1.00521 0.91343 1.20410 0.92611 1.04430 0.96617 1.20243 0.98124 1.00888 0.92464 1.20575 0.95423 1.03246 0.96641 1.20777 0.92942 1.03385 0.98725 1.17089 0.80443 1.02599 0.92662 1.91481 1.36787 1.89182 1.93522 1.19605 0.92111 0.94591 0.91968 0.92664 0.94738 0.92917 0.90597 0.90109 0.90363 0.90732 0.86516 0.85895 0.85408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.53 15 2 C 0.07 1.98 5.46 -17.82 -0.10 1.89 15 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 15 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 5 H -0.28 -6.89 7.11 56.52 0.40 -6.48 15 6 H -0.27 -6.66 7.11 56.52 0.40 -6.26 15 7 C -0.55 -15.25 7.12 -34.44 -0.25 -15.49 15 8 H 0.06 1.62 6.77 -52.49 -0.36 1.26 15 9 C 0.17 4.56 4.73 -4.97 -0.02 4.54 15 10 N -0.48 -10.93 5.30 -170.30 -0.90 -11.83 15 11 C 0.05 0.90 6.61 -2.44 -0.02 0.89 15 12 C -0.08 -1.28 7.03 -26.61 -0.19 -1.46 15 13 C -0.14 -2.55 6.23 -104.05 -0.65 -3.19 15 14 C -0.10 -1.57 10.03 -39.66 -0.40 -1.97 15 15 C -0.14 -2.18 10.06 -39.54 -0.40 -2.57 15 16 C -0.14 -2.50 10.00 -39.61 -0.40 -2.89 15 17 C 0.09 2.07 6.84 -39.14 -0.27 1.80 15 18 F -0.13 -3.19 15.20 2.25 0.03 -3.16 15 19 C 0.12 2.60 4.70 -83.29 -0.39 2.21 15 20 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 21 H 0.03 0.94 8.13 -51.93 -0.42 0.52 15 22 H 0.05 1.53 6.45 -51.93 -0.34 1.19 15 23 H 0.08 1.56 6.66 -51.93 -0.35 1.22 15 24 H 0.08 1.34 8.14 -51.93 -0.42 0.91 15 25 H 0.08 1.09 8.14 -51.93 -0.42 0.67 15 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 27 H 0.12 1.48 8.06 -52.48 -0.42 1.06 15 28 H 0.12 1.49 8.06 -52.49 -0.42 1.06 15 29 H 0.13 1.98 8.06 -52.48 -0.42 1.55 15 LS Contribution 248.38 15.07 3.74 3.74 Total: -1.00 -30.58 248.38 -7.61 -38.19 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -3.13 Total: -1.89 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -3.07 Total: -16.27 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: -0.17 Total: -37.37 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.03 Total: -3.16 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -30.58 -7.61 -38.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108241988.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.571 kcal (2) G-P(sol) polarization free energy of solvation -30.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds