Wall clock time and date at job start Mon Mar 30 2020 03:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31328 * 1 3 3 Si 1.86804 * 119.99817 * 2 1 4 4 H 1.48490 * 109.47301 * 269.99947 * 3 2 1 5 5 H 1.48501 * 109.46927 * 30.00447 * 3 2 1 6 6 H 1.48505 * 109.46733 * 149.99785 * 3 2 1 7 7 C 1.39100 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00012 * 179.97438 * 7 2 1 9 9 N 1.36789 * 120.00334 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00202 * 179.97438 * 9 7 2 11 11 O 1.21556 * 120.00029 * 359.97438 * 10 9 7 12 12 C 1.47992 * 119.99725 * 179.97438 * 10 9 7 13 13 C 1.39931 * 120.93161 * 359.97438 * 12 10 9 14 14 C 1.38082 * 118.99401 * 179.97438 * 13 12 10 15 15 N 1.31861 * 120.90417 * 359.97331 * 14 13 12 16 16 C 1.31824 * 122.06630 * 0.02874 * 15 14 13 17 17 C 1.50697 * 119.54897 * 179.97438 * 16 15 14 18 18 N 1.46905 * 109.47066 * 274.99915 * 17 16 15 19 19 C 1.38133 * 120.90426 * 0.25024 * 16 15 14 20 20 H 0.96994 * 119.99917 * 359.97438 * 1 2 3 21 21 H 0.96999 * 119.99599 * 359.97438 * 9 7 2 22 22 H 1.08003 * 120.50677 * 0.02562 * 13 12 10 23 23 H 1.07998 * 119.55204 * 180.02562 * 14 13 12 24 24 H 1.09001 * 109.47558 * 155.00078 * 17 16 15 25 25 H 1.08998 * 109.47216 * 34.99740 * 17 16 15 26 26 H 1.00901 * 110.99869 * 56.04737 * 18 17 16 27 27 H 1.00896 * 110.99543 * 179.97438 * 18 17 16 28 28 H 1.07992 * 120.50386 * 179.74551 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2472 1.6178 0.0000 4 1 2.4947 2.0465 -1.4000 5 1 1.4447 2.6527 0.7001 6 1 3.5448 1.4402 0.7001 7 6 2.0088 -1.2046 0.0005 8 1 3.0888 -1.2046 0.0001 9 7 1.3249 -2.3893 0.0005 10 6 1.9988 -3.5565 0.0005 11 8 3.2144 -3.5565 0.0001 12 6 1.2588 -4.8381 0.0011 13 6 -0.1403 -4.8609 0.0022 14 6 -0.7899 -6.0793 0.0022 15 7 -0.1102 -7.2092 0.0006 16 6 1.2079 -7.2330 -0.0004 17 6 1.9273 -8.5572 -0.0016 18 7 2.0560 -9.0457 1.3778 19 6 1.9386 -6.0608 0.0053 20 1 -0.4850 0.8400 0.0004 21 1 0.3549 -2.3893 0.0005 22 1 -0.7036 -3.9394 0.0022 23 1 -1.8695 -6.1074 0.0026 24 1 2.9188 -8.4317 -0.4366 25 1 1.3605 -9.2780 -0.5909 26 1 1.1536 -9.1091 1.8247 27 1 2.5351 -9.9333 1.4037 28 1 3.0182 -6.0879 0.0085 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130196105.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:04 Heat of formation + Delta-G solvation = -31.618590 kcal Electronic energy + Delta-G solvation = -14146.303662 eV Core-core repulsion = 11581.757462 eV Total energy + Delta-G solvation = -2564.546200 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.48106 -39.79223 -36.23149 -35.86802 -33.82102 -33.07254 -31.75305 -27.60765 -26.57808 -24.79187 -23.45013 -21.10973 -20.24206 -18.57049 -17.40215 -17.04945 -16.85041 -16.35954 -16.06125 -15.78398 -15.53761 -15.34859 -14.67506 -14.23454 -14.05408 -13.60260 -13.32283 -13.00420 -12.64651 -12.40784 -12.13929 -11.67641 -10.98481 -10.82418 -10.42062 -10.19571 -10.10077 -9.61221 -8.63149 -6.07614 -0.23483 0.09688 1.38170 1.40310 1.53496 2.02280 2.21932 2.77536 2.89639 3.19437 3.25673 3.75925 3.89050 3.92876 4.05413 4.10928 4.38203 4.53375 4.71673 4.81722 5.00455 5.19233 5.28907 5.62859 5.83662 6.13585 6.40366 6.59377 6.89444 6.93832 7.31703 7.88722 8.53572 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.057182 B = 0.006193 C = 0.005689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.547257 B = 4520.013651 C = 4920.950663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.005 4.005 3 Si 1.001 2.999 4 H -0.267 1.267 5 H -0.265 1.265 6 H -0.271 1.271 7 C -0.341 4.341 8 H 0.086 0.914 9 N -0.540 5.540 10 C 0.454 3.546 11 O -0.633 6.633 12 C -0.076 4.076 13 C -0.157 4.157 14 C 0.106 3.894 15 N -0.482 5.482 16 C 0.121 3.879 17 C 0.120 3.880 18 N -0.852 5.852 19 C -0.123 4.123 20 H 0.286 0.714 21 H 0.400 0.600 22 H 0.145 0.855 23 H 0.199 0.801 24 H 0.095 0.905 25 H 0.062 0.938 26 H 0.347 0.653 27 H 0.360 0.640 28 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.602 -11.824 -0.078 12.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.207 4.207 3 Si 0.823 3.177 4 H -0.192 1.192 5 H -0.189 1.189 6 H -0.196 1.196 7 C -0.470 4.470 8 H 0.104 0.896 9 N -0.174 5.174 10 C 0.244 3.756 11 O -0.523 6.523 12 C -0.087 4.087 13 C -0.178 4.178 14 C -0.050 4.050 15 N -0.193 5.193 16 C -0.017 4.017 17 C -0.011 4.011 18 N -0.384 5.384 19 C -0.144 4.144 20 H 0.096 0.904 21 H 0.236 0.764 22 H 0.163 0.837 23 H 0.215 0.785 24 H 0.113 0.887 25 H 0.080 0.920 26 H 0.160 0.840 27 H 0.176 0.824 28 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.981 -11.771 0.041 12.143 hybrid contribution -0.143 1.090 -0.322 1.146 sum -3.124 -10.681 -0.281 11.132 Atomic orbital electron populations 1.69607 1.07059 1.30303 1.47202 1.26230 0.96637 1.02763 0.95084 0.84820 0.77946 0.75941 0.79018 1.19181 1.18948 1.19567 1.19841 0.93249 0.83609 1.50323 0.89631 1.41846 1.09717 1.04629 1.61178 1.18347 0.87316 0.84365 0.85615 1.90550 1.15050 1.87717 1.58966 1.20544 0.94862 0.93754 0.99512 1.22544 0.93028 1.01585 1.00631 1.23168 1.01795 0.85957 0.94117 1.67435 1.08412 1.31210 1.12230 1.21393 0.89615 0.95340 0.95334 1.20581 0.99378 0.89913 0.91216 1.58620 1.27274 1.36210 1.16346 1.22027 1.01725 0.91474 0.99222 0.90432 0.76444 0.83737 0.78469 0.88678 0.91974 0.84047 0.82431 0.85082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.87 13.05 21.69 0.28 -46.59 15 2 C 0.00 -0.24 5.50 84.98 0.47 0.23 15 3 Si 1.00 41.39 29.55 68.60 2.03 43.42 15 4 H -0.27 -10.66 7.11 99.48 0.71 -9.95 15 5 H -0.27 -10.24 7.11 99.48 0.71 -9.54 15 6 H -0.27 -11.34 7.11 99.48 0.71 -10.64 15 7 C -0.34 -19.33 9.68 84.13 0.81 -18.52 15 8 H 0.09 5.16 7.15 -2.91 -0.02 5.14 15 9 N -0.54 -28.51 5.23 -309.52 -1.62 -30.13 15 10 C 0.45 23.58 7.74 86.83 0.67 24.25 15 11 O -0.63 -37.44 16.02 -3.89 -0.06 -37.50 15 12 C -0.08 -3.13 5.91 -19.88 -0.12 -3.24 15 13 C -0.16 -5.27 9.62 22.64 0.22 -5.05 15 14 C 0.11 2.93 11.17 84.65 0.95 3.87 15 15 N -0.48 -14.01 10.25 -184.07 -1.89 -15.89 15 16 C 0.12 3.67 6.29 42.53 0.27 3.94 15 17 C 0.12 2.71 7.09 85.55 0.61 3.32 15 18 N -0.85 -17.53 9.61 -190.00 -1.83 -19.35 15 19 C -0.12 -4.57 9.29 22.65 0.21 -4.36 15 20 H 0.29 13.67 8.31 -92.71 -0.77 12.90 15 21 H 0.40 19.64 6.03 -92.71 -0.56 19.08 15 22 H 0.14 4.62 6.54 -2.91 -0.02 4.60 15 23 H 0.20 3.72 8.06 -2.91 -0.02 3.70 15 24 H 0.09 2.01 8.04 -2.39 -0.02 1.99 15 25 H 0.06 1.20 8.14 -2.39 -0.02 1.18 15 26 H 0.35 6.96 8.99 -89.69 -0.81 6.16 15 27 H 0.36 5.22 9.08 -89.70 -0.81 4.41 15 28 H 0.13 5.08 7.74 -2.91 -0.02 5.06 15 Total: -1.00 -67.56 255.40 0.05 -67.52 By element: Atomic # 1 Polarization: 35.04 SS G_CDS: -0.95 Total: 34.09 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: 4.08 Total: 4.44 kcal Atomic # 7 Polarization: -106.92 SS G_CDS: -5.05 Total: -111.97 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -0.06 Total: -37.50 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -67.56 0.05 -67.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130196105.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.899 kcal (2) G-P(sol) polarization free energy of solvation -67.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds