Wall clock time and date at job start Mon Mar 30 2020 02:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29419 * 119.99955 * 2 1 4 4 O 1.41601 * 119.99760 * 173.68829 * 3 2 1 5 5 C 1.47493 * 120.00000 * 180.02562 * 2 1 3 6 6 C 1.39748 * 120.08467 * 145.62313 * 5 2 1 7 7 C 1.37715 * 119.92330 * 180.27162 * 6 5 2 8 8 C 1.39081 * 120.08044 * 0.02562 * 7 6 5 9 9 O 1.35642 * 119.91846 * 179.97438 * 8 7 6 10 10 C 1.34811 * 116.99482 * 185.89728 * 9 8 7 11 11 H 1.07998 * 120.00618 * 5.31774 * 10 9 8 12 12 C 1.38674 * 119.99358 * 185.32250 * 10 9 8 13 13 N 1.31535 * 120.00315 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99546 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47296 * 59.99685 * 14 12 10 16 16 H 1.48504 * 109.46934 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47212 * 299.99779 * 14 12 10 18 18 C 1.39071 * 120.16011 * 359.97438 * 8 7 6 19 19 C 1.37724 * 120.07791 * 0.02562 * 18 8 7 20 20 H 1.09004 * 109.47208 * 269.99770 * 1 2 3 21 21 H 1.09008 * 109.47080 * 29.99596 * 1 2 3 22 22 H 1.08998 * 109.47432 * 149.99581 * 1 2 3 23 23 H 0.96702 * 114.00242 * 180.02562 * 4 3 2 24 24 H 1.08003 * 120.03725 * 0.27943 * 6 5 2 25 25 H 1.08007 * 119.96389 * 180.02562 * 7 6 5 26 26 H 0.97005 * 120.00123 * 180.02562 * 13 12 10 27 27 H 1.07997 * 119.96454 * 179.97438 * 18 8 7 28 28 H 1.08005 * 120.03492 * 179.97438 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1541 1.1208 0.0000 4 8 3.5636 1.1245 0.1348 5 6 2.2444 -1.2773 -0.0006 6 6 3.4590 -1.3847 -0.6834 7 6 4.1420 -2.5805 -0.6864 8 6 3.6242 -3.6808 -0.0114 9 8 4.2994 -4.8572 -0.0170 10 6 3.6881 -5.9163 0.5503 11 1 2.6720 -5.8272 0.9052 12 6 4.3641 -7.1204 0.6783 13 7 5.6015 -7.2291 0.2457 14 14 3.5168 -8.5882 1.4637 15 1 2.3053 -8.9385 0.6796 16 1 4.4468 -9.7459 1.4806 17 1 3.1246 -8.2474 2.8548 18 6 2.4158 -3.5778 0.6692 19 6 1.7272 -2.3850 0.6765 20 1 -0.3634 0.0000 1.0277 21 1 -0.3634 0.8901 -0.5138 22 1 -0.3634 -0.8899 -0.5139 23 1 3.9575 2.0076 0.1241 24 1 3.8616 -0.5308 -1.2080 25 1 5.0810 -2.6641 -1.2136 26 1 6.0743 -8.0715 0.3349 27 1 2.0164 -4.4342 1.1919 28 1 0.7886 -2.3059 1.2050 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000137993984.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:31 Heat of formation + Delta-G solvation = 0.967654 kcal Electronic energy + Delta-G solvation = -14175.447428 eV Core-core repulsion = 11580.021523 eV Total energy + Delta-G solvation = -2595.425905 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 5.11 seconds Orbital eigenvalues (eV) -39.15924 -37.49108 -35.77464 -33.68056 -32.31430 -30.33196 -28.42801 -28.01585 -25.45166 -22.03875 -21.83556 -19.29332 -18.07728 -17.57876 -16.57383 -15.23858 -14.68153 -14.59914 -14.07896 -13.64322 -13.56175 -13.52201 -12.78840 -12.56040 -12.33609 -12.14141 -11.81328 -11.56195 -11.37456 -10.98159 -10.67915 -10.48756 -9.60878 -9.54038 -9.20217 -8.83957 -8.24859 -7.18718 -6.55016 -4.12394 1.63292 2.22525 2.80232 3.08436 3.10951 3.12458 3.45088 3.89383 4.53408 4.91963 5.02858 5.19275 5.47284 5.56325 5.59361 5.75378 5.79562 6.12868 6.16679 6.32171 6.61552 6.81958 6.90135 7.09922 7.19673 7.32120 7.36015 7.73631 7.89900 8.02698 8.89874 9.58578 10.62243 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.053103 B = 0.006313 C = 0.005768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.147683 B = 4434.131915 C = 4853.143701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.196 3.804 3 N -0.369 5.369 4 O -0.407 6.407 5 C -0.211 4.211 6 C -0.025 4.025 7 C -0.202 4.202 8 C 0.167 3.833 9 O -0.169 6.169 10 C -0.394 4.394 11 H 0.094 0.906 12 C 0.041 3.959 13 N -0.857 5.857 14 Si 0.943 3.057 15 H -0.268 1.268 16 H -0.277 1.277 17 H -0.269 1.269 18 C -0.242 4.242 19 C -0.039 4.039 20 H 0.082 0.918 21 H 0.075 0.925 22 H 0.084 0.916 23 H 0.388 0.612 24 H 0.119 0.881 25 H 0.119 0.881 26 H 0.273 0.727 27 H 0.130 0.870 28 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.976 9.062 0.327 12.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.008 3.992 3 N -0.115 5.115 4 O -0.311 6.311 5 C -0.215 4.215 6 C -0.044 4.044 7 C -0.222 4.222 8 C 0.111 3.889 9 O -0.070 6.070 10 C -0.470 4.470 11 H 0.112 0.888 12 C -0.165 4.165 13 N -0.491 5.491 14 Si 0.767 3.233 15 H -0.193 1.193 16 H -0.202 1.202 17 H -0.194 1.194 18 C -0.261 4.261 19 C -0.059 4.059 20 H 0.101 0.899 21 H 0.094 0.906 22 H 0.102 0.898 23 H 0.234 0.766 24 H 0.137 0.863 25 H 0.137 0.863 26 H 0.083 0.917 27 H 0.148 0.852 28 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.695 9.149 0.192 11.956 hybrid contribution 0.166 -0.936 0.498 1.073 sum -7.529 8.213 0.689 11.163 Atomic orbital electron populations 1.20656 0.87554 1.03751 1.03359 1.23582 0.95620 0.89408 0.90551 1.76466 0.91114 1.24682 1.19197 1.88629 1.14148 1.33549 1.94809 1.18769 0.98950 0.93565 1.10184 1.20798 0.92220 0.95840 0.95592 1.20137 1.02759 0.92056 1.07216 1.19571 0.90637 0.86933 0.91720 1.83959 1.41698 1.14003 1.67359 1.21356 0.98450 0.87171 1.40008 0.88829 1.25350 0.95746 0.98448 0.96913 1.70021 1.10028 1.26786 1.42231 0.85745 0.78757 0.79277 0.79479 1.19346 1.20176 1.19368 1.21077 0.98316 0.98981 1.07752 1.20837 0.97681 0.91570 0.95845 0.89903 0.90617 0.89758 0.76632 0.86279 0.86299 0.91729 0.85205 0.86994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.07 9.50 36.00 0.34 -0.72 15 2 C 0.20 3.11 6.86 -79.84 -0.55 2.56 15 3 N -0.37 -5.99 12.11 35.07 0.42 -5.56 15 4 O -0.41 -6.44 11.83 -11.47 -0.14 -6.58 15 5 C -0.21 -3.93 5.50 -105.00 -0.58 -4.51 15 6 C -0.02 -0.49 8.60 -39.21 -0.34 -0.83 15 7 C -0.20 -4.46 9.97 -39.46 -0.39 -4.85 15 8 C 0.17 4.08 6.65 -38.96 -0.26 3.82 15 9 O -0.17 -4.79 9.75 0.44 0.00 -4.78 15 10 C -0.39 -10.82 9.44 30.89 0.29 -10.53 15 11 H 0.09 2.35 5.28 -52.49 -0.28 2.08 15 12 C 0.04 1.10 5.49 -17.52 -0.10 1.01 15 13 N -0.86 -24.76 13.67 55.48 0.76 -24.00 15 14 Si 0.94 20.03 29.55 -169.99 -5.02 15.00 15 15 H -0.27 -5.50 7.11 56.52 0.40 -5.10 15 16 H -0.28 -5.75 7.11 56.52 0.40 -5.35 15 17 H -0.27 -5.52 7.11 56.52 0.40 -5.12 15 18 C -0.24 -5.22 9.11 -39.46 -0.36 -5.58 15 19 C -0.04 -0.72 9.40 -39.21 -0.37 -1.09 15 20 H 0.08 0.79 8.14 -51.93 -0.42 0.37 15 21 H 0.07 0.74 8.14 -51.92 -0.42 0.32 15 22 H 0.08 0.86 8.05 -51.93 -0.42 0.45 15 23 H 0.39 4.10 9.28 45.56 0.42 4.53 15 24 H 0.12 2.22 6.56 -52.48 -0.34 1.87 15 25 H 0.12 2.52 8.06 -52.48 -0.42 2.10 15 26 H 0.27 7.22 8.31 -40.82 -0.34 6.88 15 27 H 0.13 2.75 5.70 -52.49 -0.30 2.45 15 28 H 0.11 1.67 7.67 -52.48 -0.40 1.26 15 LS Contribution 253.95 15.07 3.83 3.83 Total: -1.00 -31.93 253.95 -4.17 -36.10 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -1.72 Total: 6.72 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: -2.31 Total: -20.74 kcal Atomic # 7 Polarization: -30.74 SS G_CDS: 1.18 Total: -29.56 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -0.13 Total: -11.36 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -31.93 -4.17 -36.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137993984.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.071 kcal (2) G-P(sol) polarization free energy of solvation -31.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.11 seconds