Wall clock time and date at job start Mon Mar 30 2020 02:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.29435 * 120.00416 * 2 1 4 4 O 1.41593 * 120.00347 * 174.91849 * 3 2 1 5 5 C 1.47439 * 119.99954 * 179.97438 * 2 1 3 6 6 C 1.39627 * 120.19356 * 114.58946 * 5 2 1 7 7 C 1.37886 * 119.91692 * 179.97438 * 6 5 2 8 8 C 1.38529 * 120.31234 * 359.97438 * 7 6 5 9 9 C 1.38084 * 120.39349 * 0.02562 * 8 7 6 10 10 C 1.38757 * 120.07783 * 0.02562 * 9 8 7 11 11 O 1.35599 * 120.15825 * 180.02562 * 10 9 8 12 12 C 1.34806 * 116.99571 * 5.79806 * 11 10 9 13 13 H 1.07996 * 120.00487 * 5.42091 * 12 11 10 14 14 C 1.38670 * 119.99575 * 185.42298 * 12 11 10 15 15 N 1.31538 * 119.99989 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99570 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47311 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.46965 * 120.00227 * 16 14 12 19 19 H 1.48500 * 109.46913 * 239.99652 * 16 14 12 20 20 H 1.08997 * 109.47720 * 270.00317 * 1 2 3 21 21 H 1.09008 * 109.47198 * 30.00197 * 1 2 3 22 22 H 1.08998 * 109.47573 * 149.99976 * 1 2 3 23 23 H 0.96701 * 114.00316 * 180.02562 * 4 3 2 24 24 H 1.07999 * 120.04425 * 359.95745 * 6 5 2 25 25 H 1.07997 * 119.84681 * 179.97438 * 7 6 5 26 26 H 1.07997 * 119.79852 * 179.74048 * 8 7 6 27 27 H 1.08002 * 119.95994 * 179.97438 * 9 8 7 28 28 H 0.97006 * 119.99881 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1542 1.1209 0.0000 4 8 3.5659 1.1233 0.1086 5 6 2.2441 -1.2769 0.0006 6 6 3.0301 -1.6344 -1.0967 7 6 3.7175 -2.8297 -1.0899 8 6 3.6329 -3.6787 0.0015 9 6 2.8594 -3.3379 1.0934 10 6 2.1600 -2.1396 1.1034 11 8 1.4003 -1.8031 2.1750 12 6 1.4607 -2.6172 3.2478 13 1 2.1585 -3.4414 3.2616 14 6 0.6268 -2.3963 4.3335 15 7 -0.2234 -1.3928 4.3164 16 14 0.7100 -3.5249 5.8197 17 1 1.7398 -4.5701 5.5907 18 1 1.0676 -2.7324 7.0236 19 1 -0.6116 -4.1697 6.0262 20 1 -0.3634 0.0001 1.0276 21 1 -0.3634 0.8900 -0.5139 22 1 -0.3634 -0.8899 -0.5138 23 1 3.9596 2.0065 0.1000 24 1 3.0994 -0.9758 -1.9498 25 1 4.3248 -3.1053 -1.9393 26 1 4.1715 -4.6148 -0.0038 27 1 2.7981 -4.0053 1.9403 28 1 -0.8065 -1.2381 5.0760 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000138198104.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:40 Heat of formation + Delta-G solvation = -19.977737 kcal Electronic energy + Delta-G solvation = -14684.465515 eV Core-core repulsion = 12088.131350 eV Total energy + Delta-G solvation = -2596.334165 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -40.90223 -38.52209 -37.56742 -35.16569 -34.27935 -31.23979 -30.42930 -29.11771 -27.34867 -24.05679 -23.11428 -20.73505 -19.85099 -19.20136 -17.87302 -16.72408 -16.47947 -16.25392 -15.67196 -15.33870 -15.10997 -14.83085 -14.40739 -14.07706 -13.59766 -13.49990 -13.27147 -13.00291 -12.69230 -12.49607 -12.34162 -12.10551 -11.53295 -10.88015 -10.80044 -10.45155 -9.67681 -8.99870 -8.47492 -6.14385 0.31615 0.70703 1.09354 1.36029 1.43701 1.53268 2.16519 2.29717 2.80605 3.14326 3.42445 3.64255 4.12907 4.23753 4.50038 4.57517 4.58805 4.72937 4.75476 4.99682 5.12059 5.13403 5.27740 5.56818 5.60353 5.71074 5.92958 6.02594 6.16694 6.87399 6.97260 7.74913 8.74667 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.027770 B = 0.010068 C = 0.008206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.041896 B = 2780.483393 C = 3411.248654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.198 3.802 3 N -0.360 5.360 4 O -0.421 6.421 5 C -0.185 4.185 6 C -0.046 4.046 7 C -0.193 4.193 8 C -0.061 4.061 9 C -0.248 4.248 10 C 0.136 3.864 11 O -0.212 6.212 12 C -0.416 4.416 13 H 0.099 0.901 14 C -0.015 4.015 15 N -0.911 5.911 16 Si 1.015 2.985 17 H -0.253 1.253 18 H -0.272 1.272 19 H -0.266 1.266 20 H 0.070 0.930 21 H 0.099 0.901 22 H 0.089 0.911 23 H 0.409 0.591 24 H 0.131 0.869 25 H 0.153 0.847 26 H 0.149 0.851 27 H 0.124 0.876 28 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.485 -1.920 -7.802 9.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.007 3.993 3 N -0.103 5.103 4 O -0.329 6.329 5 C -0.189 4.189 6 C -0.065 4.065 7 C -0.212 4.212 8 C -0.079 4.079 9 C -0.268 4.268 10 C 0.083 3.917 11 O -0.117 6.117 12 C -0.492 4.492 13 H 0.117 0.883 14 C -0.214 4.214 15 N -0.548 5.548 16 Si 0.835 3.165 17 H -0.176 1.176 18 H -0.197 1.197 19 H -0.191 1.191 20 H 0.089 0.911 21 H 0.117 0.883 22 H 0.108 0.892 23 H 0.259 0.741 24 H 0.149 0.851 25 H 0.170 0.830 26 H 0.167 0.833 27 H 0.141 0.859 28 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.034 -1.258 -7.657 8.745 hybrid contribution 0.396 -0.453 0.976 1.147 sum 4.430 -1.710 -6.680 8.196 Atomic orbital electron populations 1.20634 0.85743 1.04521 1.03468 1.23846 0.96989 0.88643 0.89793 1.76490 0.91460 1.24361 1.17987 1.88539 1.13416 1.35826 1.95164 1.18700 1.07506 0.96316 0.96339 1.20957 0.93338 0.96745 0.95439 1.21057 1.04452 0.95301 1.00370 1.21290 0.95293 0.99588 0.91704 1.21301 1.05067 0.98177 1.02218 1.19856 0.91058 0.92997 0.87779 1.83909 1.57912 1.49046 1.20816 1.21828 1.22673 1.11775 0.92938 0.88336 1.26476 0.94412 0.98939 1.01590 1.70158 1.22299 1.29884 1.32467 0.84578 0.79141 0.77243 0.75574 1.17648 1.19690 1.19132 0.91142 0.88266 0.89247 0.74148 0.85099 0.82953 0.83291 0.85863 0.91802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.21 10.04 71.23 0.72 -2.49 15 2 C 0.20 8.40 6.14 45.33 0.28 8.67 15 3 N -0.36 -14.75 12.12 -43.00 -0.52 -15.27 15 4 O -0.42 -15.93 13.91 -38.77 -0.54 -16.46 15 5 C -0.19 -8.13 4.78 -20.02 -0.10 -8.22 15 6 C -0.05 -1.65 9.42 22.52 0.21 -1.44 15 7 C -0.19 -6.13 10.03 22.26 0.22 -5.90 15 8 C -0.06 -2.06 10.03 22.30 0.22 -1.84 15 9 C -0.25 -10.79 9.12 22.36 0.20 -10.58 15 10 C 0.14 6.77 6.65 22.89 0.15 6.92 15 11 O -0.21 -12.32 9.06 -20.83 -0.19 -12.51 15 12 C -0.42 -23.73 9.44 67.92 0.64 -23.09 15 13 H 0.10 5.21 5.30 -2.91 -0.02 5.20 15 14 C -0.02 -0.86 5.49 84.84 0.47 -0.39 15 15 N -0.91 -54.20 13.67 21.62 0.30 -53.90 15 16 Si 1.01 42.16 29.55 68.60 2.03 44.19 15 17 H -0.25 -9.77 7.11 99.48 0.71 -9.06 15 18 H -0.27 -10.97 7.11 99.48 0.71 -10.26 15 19 H -0.27 -10.55 7.11 99.48 0.71 -9.85 15 20 H 0.07 3.11 8.14 -2.39 -0.02 3.09 15 21 H 0.10 3.01 8.14 -2.38 -0.02 2.99 15 22 H 0.09 3.04 8.11 -2.39 -0.02 3.02 15 23 H 0.41 10.67 9.28 -74.06 -0.69 9.98 15 24 H 0.13 4.13 8.06 -2.91 -0.02 4.11 15 25 H 0.15 3.56 8.06 -2.91 -0.02 3.54 15 26 H 0.15 3.86 8.06 -2.91 -0.02 3.84 15 27 H 0.12 5.39 5.71 -2.91 -0.02 5.37 15 28 H 0.27 14.89 8.31 -92.70 -0.77 14.12 15 Total: -1.00 -70.84 257.95 4.60 -66.25 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: 0.50 Total: 26.08 kcal Atomic # 6 Polarization: -41.39 SS G_CDS: 3.02 Total: -38.37 kcal Atomic # 7 Polarization: -68.95 SS G_CDS: -0.23 Total: -69.17 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -0.73 Total: -28.98 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -70.84 4.60 -66.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000138198104.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.269 kcal (2) G-P(sol) polarization free energy of solvation -70.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds