Wall clock time and date at job start Mon Mar 30 2020 02:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29333 * 119.99989 * 2 1 4 4 O 1.41606 * 119.99777 * 172.62027 * 3 2 1 5 5 C 1.47654 * 120.00168 * 180.02562 * 2 1 3 6 6 C 1.39681 * 120.11588 * 324.96524 * 5 2 1 7 7 C 1.37988 * 119.99071 * 179.74857 * 6 5 2 8 8 C 1.38244 * 120.22430 * 0.23088 * 7 6 5 9 9 C 1.38964 * 120.23115 * 0.04571 * 8 7 6 10 10 O 1.35756 * 119.99750 * 180.02562 * 9 8 7 11 11 C 1.34837 * 117.00019 * 5.52469 * 10 9 8 12 12 H 1.08000 * 119.99500 * 3.55957 * 11 10 9 13 13 C 1.38654 * 119.99912 * 183.56239 * 11 10 9 14 14 N 1.31555 * 120.00036 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99801 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46825 * 90.00208 * 15 13 11 17 17 H 1.48497 * 109.46957 * 210.00009 * 15 13 11 18 18 H 1.48501 * 109.47061 * 330.00187 * 15 13 11 19 19 C 1.38634 * 120.00803 * 359.97410 * 9 8 7 20 20 H 1.08998 * 109.46660 * 270.00011 * 1 2 3 21 21 H 1.09001 * 109.47095 * 29.99371 * 1 2 3 22 22 H 1.08993 * 109.46994 * 149.99811 * 1 2 3 23 23 H 0.96702 * 113.99411 * 180.02562 * 4 3 2 24 24 H 1.08002 * 120.00338 * 0.02562 * 6 5 2 25 25 H 1.07998 * 119.89508 * 180.25197 * 7 6 5 26 26 H 1.07998 * 119.88558 * 180.02562 * 8 7 6 27 27 H 0.96999 * 119.99709 * 179.97438 * 14 13 11 28 28 H 1.08006 * 120.11186 * 180.02562 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1536 1.1201 0.0000 4 8 3.5609 1.1251 0.1575 5 6 2.2453 -1.2787 -0.0006 6 6 1.7390 -2.3806 0.6926 7 6 2.4285 -3.5759 0.6860 8 6 3.6230 -3.6864 -0.0010 9 6 4.1381 -2.5944 -0.6890 10 8 5.3113 -2.7084 -1.3625 11 6 5.8674 -3.9354 -1.4200 12 1 5.3517 -4.7826 -0.9925 13 6 7.1014 -4.1095 -2.0279 14 7 7.7298 -3.0774 -2.5481 15 14 7.8722 -5.8093 -2.1069 16 1 7.4400 -6.4912 -3.3533 17 1 9.3517 -5.6827 -2.0993 18 1 7.4374 -6.6051 -0.9309 19 6 3.4536 -1.3889 -0.6884 20 1 -0.3632 0.0000 1.0277 21 1 -0.3633 0.8900 -0.5137 22 1 -0.3633 -0.8899 -0.5138 23 1 3.9548 2.0081 0.1449 24 1 0.8057 -2.2984 1.2298 25 1 2.0335 -4.4281 1.2191 26 1 4.1579 -4.6247 -0.0028 27 1 8.5932 -3.1992 -2.9730 28 1 3.8522 -0.5392 -1.2229 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000138303621.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:57 Heat of formation + Delta-G solvation = 3.485331 kcal Electronic energy + Delta-G solvation = -14299.384210 eV Core-core repulsion = 11704.067480 eV Total energy + Delta-G solvation = -2595.316730 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.13542 -37.39998 -35.84812 -33.73504 -32.27686 -29.85027 -28.90079 -27.88270 -25.36309 -22.50237 -21.39364 -19.49554 -18.15123 -17.27744 -15.98153 -15.18457 -15.06850 -14.58175 -14.27791 -13.98568 -13.51999 -13.11016 -12.92199 -12.49085 -12.36598 -12.20235 -11.71310 -11.36836 -11.19794 -10.88990 -10.73596 -10.48296 -9.75754 -9.50779 -9.19320 -8.84357 -8.00101 -7.26716 -6.45117 -4.03950 1.50265 2.31901 2.74128 3.12770 3.13378 3.18110 3.40774 3.95448 4.53946 4.73564 5.10138 5.36906 5.49126 5.54814 5.56556 5.69141 5.87502 6.01851 6.17743 6.32512 6.58592 6.81432 6.95743 7.03381 7.26946 7.30300 7.42077 7.73391 7.98180 7.99122 8.99970 9.70308 10.72904 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.043518 B = 0.007141 C = 0.006305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.251917 B = 3920.254085 C = 4439.623414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.180 3.820 3 N -0.351 5.351 4 O -0.395 6.395 5 C -0.067 4.067 6 C -0.185 4.185 7 C -0.081 4.081 8 C -0.222 4.222 9 C 0.146 3.854 10 O -0.177 6.177 11 C -0.392 4.392 12 H 0.092 0.908 13 C 0.039 3.961 14 N -0.861 5.861 15 Si 0.942 3.058 16 H -0.273 1.273 17 H -0.277 1.277 18 H -0.267 1.267 19 C -0.139 4.139 20 H 0.084 0.916 21 H 0.077 0.923 22 H 0.085 0.915 23 H 0.392 0.608 24 H 0.111 0.889 25 H 0.111 0.889 26 H 0.128 0.872 27 H 0.270 0.730 28 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.645 2.168 4.642 11.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.010 4.010 3 N -0.093 5.093 4 O -0.302 6.302 5 C -0.070 4.070 6 C -0.206 4.206 7 C -0.099 4.099 8 C -0.242 4.242 9 C 0.092 3.908 10 O -0.080 6.080 11 C -0.468 4.468 12 H 0.109 0.891 13 C -0.165 4.165 14 N -0.496 5.496 15 Si 0.766 3.234 16 H -0.199 1.199 17 H -0.202 1.202 18 H -0.192 1.192 19 C -0.160 4.160 20 H 0.103 0.897 21 H 0.096 0.904 22 H 0.104 0.896 23 H 0.238 0.762 24 H 0.129 0.871 25 H 0.129 0.871 26 H 0.146 0.854 27 H 0.080 0.920 28 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.420 2.761 4.353 11.626 hybrid contribution 1.012 -1.107 0.037 1.500 sum -9.408 1.654 4.390 10.513 Atomic orbital electron populations 1.20641 0.86987 1.03954 1.03461 1.23736 0.95970 0.89151 0.92116 1.76322 0.92121 1.24841 1.15979 1.88738 1.13449 1.33982 1.93981 1.18850 0.95047 0.92817 1.00247 1.20648 1.01414 0.93094 1.05464 1.20662 0.94591 0.96677 0.98008 1.21304 0.98783 1.00127 1.03957 1.19227 0.87512 0.93064 0.90989 1.84001 1.29260 1.32526 1.62237 1.21333 1.02889 0.83285 1.39334 0.89065 1.25294 0.95467 0.99628 0.96142 1.70045 1.14958 1.29949 1.34659 0.85705 0.78452 0.80175 0.79041 1.19860 1.20240 1.19191 1.20336 0.94538 0.96666 1.04422 0.89743 0.90418 0.89646 0.76189 0.87118 0.87105 0.85387 0.92000 0.85783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.02 9.53 36.00 0.34 -0.68 15 2 C 0.18 2.94 6.85 -79.80 -0.55 2.40 15 3 N -0.35 -6.01 12.10 35.09 0.42 -5.58 15 4 O -0.39 -7.03 11.92 -11.47 -0.14 -7.17 15 5 C -0.07 -1.30 5.48 -105.05 -0.58 -1.88 15 6 C -0.19 -3.24 9.43 -39.13 -0.37 -3.60 15 7 C -0.08 -1.49 10.02 -39.67 -0.40 -1.89 15 8 C -0.22 -4.91 9.14 -39.31 -0.36 -5.26 15 9 C 0.15 3.66 6.64 -39.17 -0.26 3.40 15 10 O -0.18 -5.18 9.75 0.01 0.00 -5.18 15 11 C -0.39 -11.11 9.46 30.89 0.29 -10.82 15 12 H 0.09 2.38 5.25 -52.49 -0.28 2.10 15 13 C 0.04 1.08 5.49 -17.52 -0.10 0.99 15 14 N -0.86 -25.57 13.67 55.48 0.76 -24.81 15 15 Si 0.94 20.63 29.55 -169.99 -5.02 15.61 15 16 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15 17 H -0.28 -5.95 7.11 56.52 0.40 -5.55 15 18 H -0.27 -5.62 7.11 56.52 0.40 -5.21 15 19 C -0.14 -3.18 8.54 -38.98 -0.33 -3.51 15 20 H 0.08 0.77 8.14 -51.93 -0.42 0.35 15 21 H 0.08 0.76 8.14 -51.93 -0.42 0.34 15 22 H 0.08 0.85 8.07 -51.93 -0.42 0.43 15 23 H 0.39 4.89 9.28 45.56 0.42 5.31 15 24 H 0.11 1.54 7.70 -52.49 -0.40 1.13 15 25 H 0.11 1.67 8.06 -52.49 -0.42 1.25 15 26 H 0.13 2.80 5.67 -52.49 -0.30 2.50 15 27 H 0.27 7.33 8.31 -40.82 -0.34 6.99 15 28 H 0.12 2.95 6.66 -52.48 -0.35 2.60 15 LS Contribution 254.18 15.07 3.83 3.83 Total: -1.00 -33.17 254.18 -4.17 -37.35 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -1.73 Total: 6.83 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: -2.30 Total: -20.87 kcal Atomic # 7 Polarization: -31.58 SS G_CDS: 1.18 Total: -30.40 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -0.14 Total: -12.35 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -33.17 -4.17 -37.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000138303621.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.831 kcal (2) G-P(sol) polarization free energy of solvation -33.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds