Wall clock time and date at job start Mon Mar 30 2020 02:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29333 * 119.99989 * 2 1 4 4 O 1.41606 * 119.99777 * 172.62027 * 3 2 1 5 5 C 1.47654 * 120.00168 * 180.02562 * 2 1 3 6 6 C 1.39681 * 120.11588 * 324.96524 * 5 2 1 7 7 C 1.37988 * 119.99071 * 179.74857 * 6 5 2 8 8 C 1.38244 * 120.22430 * 0.23088 * 7 6 5 9 9 C 1.38964 * 120.23115 * 0.04571 * 8 7 6 10 10 O 1.35756 * 119.99750 * 180.02562 * 9 8 7 11 11 C 1.34837 * 117.00019 * 5.52469 * 10 9 8 12 12 H 1.08000 * 119.99500 * 3.55957 * 11 10 9 13 13 C 1.38654 * 119.99912 * 183.56239 * 11 10 9 14 14 N 1.31555 * 120.00036 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99801 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46825 * 90.00208 * 15 13 11 17 17 H 1.48497 * 109.46957 * 210.00009 * 15 13 11 18 18 H 1.48501 * 109.47061 * 330.00187 * 15 13 11 19 19 C 1.38634 * 120.00803 * 359.97410 * 9 8 7 20 20 H 1.08998 * 109.46660 * 270.00011 * 1 2 3 21 21 H 1.09001 * 109.47095 * 29.99371 * 1 2 3 22 22 H 1.08993 * 109.46994 * 149.99811 * 1 2 3 23 23 H 0.96702 * 113.99411 * 180.02562 * 4 3 2 24 24 H 1.08002 * 120.00338 * 0.02562 * 6 5 2 25 25 H 1.07998 * 119.89508 * 180.25197 * 7 6 5 26 26 H 1.07998 * 119.88558 * 180.02562 * 8 7 6 27 27 H 0.96999 * 119.99709 * 179.97438 * 14 13 11 28 28 H 1.08006 * 120.11186 * 180.02562 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1536 1.1201 0.0000 4 8 3.5609 1.1251 0.1575 5 6 2.2453 -1.2787 -0.0006 6 6 1.7390 -2.3806 0.6926 7 6 2.4285 -3.5759 0.6860 8 6 3.6230 -3.6864 -0.0010 9 6 4.1381 -2.5944 -0.6890 10 8 5.3113 -2.7084 -1.3625 11 6 5.8674 -3.9354 -1.4200 12 1 5.3517 -4.7826 -0.9925 13 6 7.1014 -4.1095 -2.0279 14 7 7.7298 -3.0774 -2.5481 15 14 7.8722 -5.8093 -2.1069 16 1 7.4400 -6.4912 -3.3533 17 1 9.3517 -5.6827 -2.0993 18 1 7.4374 -6.6051 -0.9309 19 6 3.4536 -1.3889 -0.6884 20 1 -0.3632 0.0000 1.0277 21 1 -0.3633 0.8900 -0.5137 22 1 -0.3633 -0.8899 -0.5138 23 1 3.9548 2.0081 0.1449 24 1 0.8057 -2.2984 1.2298 25 1 2.0335 -4.4281 1.2191 26 1 4.1579 -4.6247 -0.0028 27 1 8.5932 -3.1992 -2.9730 28 1 3.8522 -0.5392 -1.2229 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000138303621.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:57 Heat of formation + Delta-G solvation = -21.304561 kcal Electronic energy + Delta-G solvation = -14300.459181 eV Core-core repulsion = 11704.067480 eV Total energy + Delta-G solvation = -2596.391701 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 3.70 seconds Orbital eigenvalues (eV) -40.86526 -38.99697 -37.38730 -35.09059 -34.27691 -31.46620 -30.50301 -29.00894 -27.37962 -24.11296 -23.05392 -20.99256 -19.74169 -19.12064 -17.60177 -16.75356 -16.61268 -16.29317 -15.96554 -15.56917 -15.15554 -14.54566 -14.34947 -14.06014 -13.60066 -13.45318 -13.17978 -13.01639 -12.89483 -12.51449 -12.32034 -12.13695 -11.45105 -11.02009 -10.83841 -10.62271 -9.59882 -9.04449 -8.48816 -6.18039 -0.00786 0.68056 1.30030 1.33952 1.45580 1.52309 2.15277 2.18130 2.81138 3.14168 3.27404 3.73596 4.09135 4.29546 4.35172 4.56478 4.63943 4.72748 4.82476 4.97445 5.07202 5.18756 5.27853 5.48523 5.60165 5.66927 5.95477 6.00310 6.12459 6.75025 6.95046 7.76057 8.74901 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.043518 B = 0.007141 C = 0.006305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.251917 B = 3920.254085 C = 4439.623414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.177 3.823 3 N -0.357 5.357 4 O -0.426 6.426 5 C -0.069 4.069 6 C -0.154 4.154 7 C -0.074 4.074 8 C -0.229 4.229 9 C 0.104 3.896 10 O -0.236 6.236 11 C -0.415 4.415 12 H 0.105 0.895 13 C -0.025 4.025 14 N -0.923 5.923 15 Si 1.022 2.978 16 H -0.262 1.262 17 H -0.272 1.272 18 H -0.250 1.250 19 C -0.163 4.163 20 H 0.115 0.885 21 H 0.091 0.909 22 H 0.102 0.898 23 H 0.408 0.592 24 H 0.167 0.833 25 H 0.159 0.841 26 H 0.124 0.876 27 H 0.273 0.727 28 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.865 0.721 6.522 15.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.013 4.013 3 N -0.100 5.100 4 O -0.334 6.334 5 C -0.071 4.071 6 C -0.174 4.174 7 C -0.092 4.092 8 C -0.249 4.249 9 C 0.054 3.946 10 O -0.143 6.143 11 C -0.491 4.491 12 H 0.122 0.878 13 C -0.222 4.222 14 N -0.561 5.561 15 Si 0.841 3.159 16 H -0.187 1.187 17 H -0.197 1.197 18 H -0.173 1.173 19 C -0.184 4.184 20 H 0.133 0.867 21 H 0.110 0.890 22 H 0.120 0.880 23 H 0.257 0.743 24 H 0.185 0.815 25 H 0.177 0.823 26 H 0.142 0.858 27 H 0.082 0.918 28 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.685 1.340 6.264 15.109 hybrid contribution 1.688 -0.514 -0.397 1.809 sum -11.996 0.826 5.867 13.379 Atomic orbital electron populations 1.20893 0.82510 1.05533 1.05818 1.24574 0.98355 0.87311 0.91050 1.76342 0.91405 1.25464 1.16816 1.88714 1.14573 1.35935 1.94190 1.19293 0.93645 0.95180 0.99014 1.21331 1.02252 0.91319 1.02516 1.21199 0.92655 0.98782 0.96552 1.21494 1.00343 0.98941 1.04109 1.19765 0.87255 0.95075 0.92480 1.83964 1.31703 1.33353 1.65249 1.21881 1.03596 0.83774 1.39872 0.87780 1.26672 0.95681 1.04535 0.95353 1.70206 1.15839 1.32978 1.37105 0.84541 0.77263 0.74214 0.79871 1.18688 1.19683 1.17339 1.20396 0.96492 0.95428 1.06072 0.86672 0.89049 0.87960 0.74262 0.81526 0.82338 0.85800 0.91843 0.88337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.53 9.53 71.24 0.68 -0.85 15 2 C 0.18 5.30 6.85 45.42 0.31 5.61 15 3 N -0.36 -11.84 12.10 -42.88 -0.52 -12.36 15 4 O -0.43 -15.59 11.92 -38.80 -0.46 -16.06 15 5 C -0.07 -2.53 5.48 -20.14 -0.11 -2.64 15 6 C -0.15 -4.60 9.43 22.56 0.21 -4.39 15 7 C -0.07 -2.42 10.02 22.21 0.22 -2.20 15 8 C -0.23 -10.03 9.14 22.45 0.21 -9.82 15 9 C 0.10 5.47 6.64 22.54 0.15 5.62 15 10 O -0.24 -14.85 9.75 -22.87 -0.22 -15.07 15 11 C -0.42 -24.75 9.46 67.92 0.64 -24.11 15 12 H 0.10 5.61 5.25 -2.91 -0.02 5.59 15 13 C -0.03 -1.47 5.49 84.83 0.47 -1.00 15 14 N -0.92 -58.17 13.67 21.61 0.30 -57.87 15 15 Si 1.02 43.33 29.55 68.60 2.03 45.36 15 16 H -0.26 -10.51 7.11 99.48 0.71 -9.80 15 17 H -0.27 -11.13 7.11 99.48 0.71 -10.42 15 18 H -0.25 -9.72 7.11 99.48 0.71 -9.01 15 19 C -0.16 -7.73 8.54 22.66 0.19 -7.54 15 20 H 0.12 1.34 8.14 -2.39 -0.02 1.32 15 21 H 0.09 1.37 8.14 -2.39 -0.02 1.36 15 22 H 0.10 1.44 8.07 -2.39 -0.02 1.42 15 23 H 0.41 10.72 9.28 -74.06 -0.69 10.03 15 24 H 0.17 3.24 7.70 -2.91 -0.02 3.22 15 25 H 0.16 3.74 8.06 -2.91 -0.02 3.72 15 26 H 0.12 5.43 5.67 -2.91 -0.02 5.41 15 27 H 0.27 15.68 8.31 -92.71 -0.77 14.91 15 28 H 0.10 5.06 6.66 -2.91 -0.02 5.04 15 Total: -1.00 -79.13 254.18 4.60 -74.53 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: 0.51 Total: 22.79 kcal Atomic # 6 Polarization: -44.29 SS G_CDS: 2.97 Total: -41.32 kcal Atomic # 7 Polarization: -70.01 SS G_CDS: -0.22 Total: -70.23 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.69 Total: -31.13 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -79.13 4.60 -74.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000138303621.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.230 kcal (2) G-P(sol) polarization free energy of solvation -79.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.70 seconds