Wall clock time and date at job start Mon Mar 30 2020 03:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38212 * 120.40867 * 2 1 4 4 C 1.39575 * 118.32875 * 179.97438 * 3 2 1 5 5 N 1.38785 * 120.53238 * 179.97438 * 4 3 2 6 6 C 1.34772 * 120.00318 * 185.08293 * 5 4 3 7 7 O 1.21704 * 120.00064 * 355.18316 * 6 5 4 8 8 C 1.46243 * 120.00096 * 175.18362 * 6 5 4 9 9 H 1.07997 * 120.00018 * 0.02562 * 8 6 5 10 10 C 1.40108 * 120.00101 * 179.97438 * 8 6 5 11 11 N 1.30647 * 119.99912 * 0.02562 * 10 8 6 12 12 Si 1.86802 * 120.00242 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.46665 * 90.00048 * 12 10 8 14 14 H 1.48497 * 109.47301 * 210.00302 * 12 10 8 15 15 H 1.48500 * 109.46755 * 330.00316 * 12 10 8 16 16 N 1.32977 * 118.94342 * 0.25540 * 4 3 2 17 17 C 1.31732 * 120.69203 * 359.48259 * 16 4 3 18 18 C 1.50703 * 119.07705 * 180.24620 * 17 16 4 19 19 N 1.31814 * 121.84037 * 0.53250 * 17 16 4 20 20 H 1.09000 * 109.46755 * 89.99778 * 1 2 3 21 21 H 1.08999 * 109.47324 * 210.00063 * 1 2 3 22 22 H 1.08995 * 109.46746 * 329.99928 * 1 2 3 23 23 H 1.08003 * 120.83042 * 359.95529 * 3 2 1 24 24 H 0.97003 * 119.99811 * 5.34997 * 5 4 3 25 25 H 0.96999 * 120.00172 * 179.97438 * 11 10 8 26 26 H 1.09007 * 109.46982 * 270.27802 * 18 17 16 27 27 H 1.08999 * 109.47057 * 30.27996 * 18 17 16 28 28 H 1.08994 * 109.46708 * 150.28222 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2066 1.1920 0.0000 4 6 3.6014 1.1413 0.0005 5 7 4.3494 2.3104 0.0000 6 6 5.6919 2.2514 -0.1028 7 8 6.2551 1.1726 -0.1070 8 6 6.4719 3.4839 -0.2095 9 1 5.9722 4.4412 -0.2054 10 6 7.8676 3.4226 -0.3159 11 7 8.4722 2.2644 -0.3203 12 14 8.8640 4.9968 -0.4528 13 1 9.2366 5.4664 0.9058 14 1 10.0949 4.7365 -1.2416 15 1 8.0523 6.0388 -1.1315 16 7 4.2023 -0.0449 -0.0041 17 6 3.4956 -1.1566 0.0010 18 6 4.2143 -2.4813 0.0011 19 7 2.1776 -1.1428 0.0005 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3632 0.8900 0.5138 23 1 1.6870 2.1388 -0.0007 24 1 3.9062 3.1697 0.0776 25 1 9.4384 2.2220 -0.3944 26 1 4.3879 -2.8005 -1.0266 27 1 5.1696 -2.3764 0.5153 28 1 3.6050 -3.2251 0.5145 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000138814278.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:46 Heat of formation + Delta-G solvation = 10.012080 kcal Electronic energy + Delta-G solvation = -14431.832639 eV Core-core repulsion = 11869.091681 eV Total energy + Delta-G solvation = -2562.740958 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.46062 -37.59858 -34.19557 -33.77677 -32.52262 -30.93307 -28.76330 -27.56621 -26.45766 -22.58280 -21.77653 -19.97673 -17.95452 -16.47397 -16.01954 -15.29517 -14.92027 -14.84297 -14.03597 -13.70054 -13.24734 -12.99460 -12.61433 -12.39934 -12.22589 -11.83309 -11.74130 -11.33749 -11.15103 -10.68325 -10.36414 -10.22776 -10.11562 -9.08622 -8.94471 -8.67816 -7.68600 -7.52174 -6.34158 -4.84375 1.56925 1.90071 3.06279 3.12565 3.16180 3.86679 4.16415 4.26948 4.47881 4.58626 4.81750 5.36024 5.49102 5.58042 5.63770 5.67706 5.84277 5.88157 6.00922 6.07212 6.26905 6.39020 6.93132 7.26043 7.33745 7.79630 7.83448 8.08116 8.79683 8.85031 9.22836 10.38926 10.56030 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.049709 B = 0.007116 C = 0.006257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.140217 B = 3934.039083 C = 4473.562106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.186 3.814 3 C -0.303 4.303 4 C 0.430 3.570 5 N -0.662 5.662 6 C 0.526 3.474 7 O -0.505 6.505 8 C -0.538 4.538 9 H 0.072 0.928 10 C 0.085 3.915 11 N -0.758 5.758 12 Si 0.915 3.085 13 H -0.270 1.270 14 H -0.277 1.277 15 H -0.264 1.264 16 N -0.508 5.508 17 C 0.341 3.659 18 C -0.078 4.078 19 N -0.571 5.571 20 H 0.077 0.923 21 H 0.076 0.924 22 H 0.073 0.927 23 H 0.135 0.865 24 H 0.401 0.599 25 H 0.273 0.727 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.538 -0.904 0.452 10.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.042 3.958 3 C -0.331 4.331 4 C 0.188 3.812 5 N -0.306 5.306 6 C 0.330 3.670 7 O -0.380 6.380 8 C -0.574 4.574 9 H 0.090 0.910 10 C -0.136 4.136 11 N -0.386 5.386 12 Si 0.739 3.261 13 H -0.196 1.196 14 H -0.203 1.203 15 H -0.188 1.188 16 N -0.231 5.231 17 C 0.071 3.929 18 C -0.136 4.136 19 N -0.292 5.292 20 H 0.096 0.904 21 H 0.095 0.905 22 H 0.092 0.908 23 H 0.153 0.847 24 H 0.236 0.764 25 H 0.084 0.916 26 H 0.098 0.902 27 H 0.104 0.896 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.299 -2.520 0.408 9.643 hybrid contribution -0.189 2.226 -0.063 2.235 sum -9.488 -0.294 0.345 9.498 Atomic orbital electron populations 1.20655 0.88750 1.03193 1.02916 1.21207 0.96674 0.87941 0.89952 1.21958 0.93909 1.00395 1.16815 1.19062 0.87691 0.88045 0.86411 1.44713 1.09545 1.04736 1.71583 1.18670 0.78087 0.91663 0.78586 1.90749 1.67168 1.30133 1.49954 1.20839 0.91414 0.91580 1.53612 0.90970 1.25731 0.97958 0.97210 0.92695 1.69987 1.10035 1.25017 1.33548 0.86251 0.79206 0.81744 0.78913 1.19567 1.20255 1.18792 1.68582 1.39328 0.96726 1.18433 1.23155 0.86123 0.94667 0.88911 1.20457 1.00006 0.89865 1.03321 1.68011 1.09855 1.29880 1.21462 0.90410 0.90508 0.90783 0.84740 0.76423 0.91633 0.90220 0.89576 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.12 10.22 36.01 0.37 -0.75 15 2 C 0.19 3.12 6.82 -82.31 -0.56 2.56 15 3 C -0.30 -5.34 9.72 -39.09 -0.38 -5.73 15 4 C 0.43 9.62 7.45 -154.57 -1.15 8.47 15 5 N -0.66 -15.18 5.37 -12.62 -0.07 -15.25 15 6 C 0.53 14.87 7.70 -13.05 -0.10 14.77 15 7 O -0.51 -16.25 13.32 5.19 0.07 -16.18 15 8 C -0.54 -14.68 9.54 -35.67 -0.34 -15.02 15 9 H 0.07 1.76 7.85 -52.49 -0.41 1.35 15 10 C 0.09 2.30 5.50 -17.35 -0.10 2.21 15 11 N -0.76 -22.12 11.83 55.55 0.66 -21.46 15 12 Si 0.91 19.44 29.56 -169.99 -5.02 14.41 15 13 H -0.27 -5.62 7.11 56.52 0.40 -5.22 15 14 H -0.28 -5.79 7.11 56.52 0.40 -5.39 15 15 H -0.26 -5.40 7.11 56.52 0.40 -5.00 15 16 N -0.51 -12.40 7.93 -9.92 -0.08 -12.48 15 17 C 0.34 7.06 7.64 -157.23 -1.20 5.86 15 18 C -0.08 -1.30 10.32 36.01 0.37 -0.93 15 19 N -0.57 -10.75 10.27 -7.05 -0.07 -10.83 15 20 H 0.08 0.79 8.14 -51.93 -0.42 0.36 15 21 H 0.08 0.83 8.14 -51.93 -0.42 0.41 15 22 H 0.07 0.69 8.09 -51.93 -0.42 0.27 15 23 H 0.13 1.88 8.06 -52.48 -0.42 1.46 15 24 H 0.40 7.48 8.70 -40.82 -0.36 7.13 15 25 H 0.27 7.20 8.29 -40.82 -0.34 6.86 15 26 H 0.08 1.22 8.14 -51.92 -0.42 0.80 15 27 H 0.09 1.50 8.14 -51.93 -0.42 1.08 15 28 H 0.08 1.08 8.14 -51.93 -0.42 0.66 15 LS Contribution 256.20 15.07 3.86 3.86 Total: -1.00 -35.12 256.20 -6.61 -41.72 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -2.86 Total: 4.76 kcal Atomic # 6 Polarization: 14.53 SS G_CDS: -3.09 Total: 11.44 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: 0.44 Total: -60.01 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: 0.07 Total: -16.18 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -35.12 -6.61 -41.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000138814278.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.735 kcal (2) G-P(sol) polarization free energy of solvation -35.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds